Wall clock time and date at job start Mon Mar 30 2020 03:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99623 * 2 1 4 4 H 1.48499 * 109.46692 * 270.00194 * 3 2 1 5 5 H 1.48495 * 109.47191 * 29.99816 * 3 2 1 6 6 H 1.48495 * 109.46832 * 150.00252 * 3 2 1 7 7 C 1.37874 * 120.00209 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99770 * 0.02562 * 7 2 1 9 9 S 1.76203 * 119.99912 * 179.97438 * 7 2 1 10 10 O 1.42096 * 106.40223 * 66.46128 * 9 7 2 11 11 O 1.42105 * 106.40195 * 293.54092 * 9 7 2 12 12 N 1.65603 * 107.21630 * 180.02562 * 9 7 2 13 13 C 1.46500 * 119.99933 * 65.00157 * 12 9 7 14 14 H 1.09002 * 110.39927 * 24.29680 * 13 12 9 15 15 C 1.54308 * 110.44450 * 146.73703 * 13 12 9 16 16 N 1.48213 * 105.06308 * 118.06584 * 15 13 12 17 17 O 1.47742 * 105.37673 * 24.30633 * 16 15 13 18 18 C 1.44934 * 104.65133 * 319.53409 * 17 16 15 19 19 H 0.96993 * 120.00203 * 359.97438 * 1 2 3 20 20 H 0.96996 * 119.99810 * 244.99450 * 12 9 7 21 21 H 1.09001 * 110.32133 * 236.96714 * 15 13 12 22 22 H 1.08998 * 110.32286 * 359.06630 * 15 13 12 23 23 H 1.00898 * 110.99757 * 144.54997 * 16 15 13 24 24 H 1.08992 * 110.58525 * 280.50291 * 18 17 16 25 25 H 1.09007 * 110.63003 * 157.63391 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4964 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 16 3.7666 -1.1939 -0.0012 10 8 4.1683 -0.6498 1.2485 11 8 4.1674 -0.6491 -1.2510 12 7 4.2568 -2.7757 -0.0025 13 6 3.9611 -3.6333 -1.1528 14 1 3.8214 -3.0305 -2.0502 15 6 5.0929 -4.6607 -1.3643 16 7 4.4497 -5.9842 -1.1871 17 8 3.0194 -5.7680 -1.4874 18 6 2.7058 -4.4910 -0.8779 19 1 -0.4850 0.8400 0.0004 20 1 4.7399 -3.1343 0.7584 21 1 5.5029 -4.5705 -2.3702 22 1 5.8780 -4.5172 -0.6220 23 1 4.8510 -6.6677 -1.8115 24 1 2.5489 -4.6064 0.1945 25 1 1.8285 -4.0463 -1.3479 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722502244.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:57 Heat of formation + Delta-G solvation = -70.979291 kcal Electronic energy + Delta-G solvation = -13928.128803 eV Core-core repulsion = 11263.767990 eV Total energy + Delta-G solvation = -2664.360813 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.051 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.63611 -35.71411 -34.52185 -34.22286 -33.08251 -31.49826 -28.31337 -26.44953 -23.82893 -21.26640 -19.30868 -17.74699 -17.31371 -16.62067 -15.86071 -15.34947 -15.00571 -14.08721 -13.98086 -13.51114 -13.15591 -12.91198 -12.72730 -12.28182 -11.90131 -11.47096 -11.30378 -10.85926 -10.72009 -10.58244 -10.38863 -9.89987 -9.32381 -9.25832 -8.86450 -8.75586 -6.85267 -5.40826 1.95642 3.04217 3.13677 3.14274 3.23329 3.90893 4.11369 4.53076 4.61747 4.70409 5.04060 5.11175 5.30442 5.55237 5.66068 5.84299 6.06314 6.10121 6.40851 6.70896 6.76421 7.41637 7.58516 8.13833 8.65126 10.26657 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.047393 B = 0.010769 C = 0.009500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.660157 B = 2599.381623 C = 2946.588686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.154 3.846 3 Si 0.802 3.198 4 H -0.246 1.246 5 H -0.255 1.255 6 H -0.221 1.221 7 C -1.017 5.017 8 H 0.124 0.876 9 S 2.672 3.328 10 O -1.005 7.005 11 O -1.011 7.011 12 N -1.113 6.113 13 C 0.132 3.868 14 H 0.111 0.889 15 C -0.001 4.001 16 N -0.492 5.492 17 O -0.245 6.245 18 C 0.029 3.971 19 H 0.281 0.719 20 H 0.409 0.591 21 H 0.064 0.936 22 H 0.107 0.893 23 H 0.349 0.651 24 H 0.079 0.921 25 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.039 -7.185 -2.436 10.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.066 4.066 3 Si 0.622 3.378 4 H -0.170 1.170 5 H -0.179 1.179 6 H -0.143 1.143 7 C -1.152 5.152 8 H 0.141 0.859 9 S 2.774 3.226 10 O -0.995 6.995 11 O -1.000 7.000 12 N -0.868 5.868 13 C 0.022 3.978 14 H 0.129 0.871 15 C -0.133 4.133 16 N -0.161 5.161 17 O -0.254 6.254 18 C -0.050 4.050 19 H 0.092 0.908 20 H 0.242 0.758 21 H 0.082 0.918 22 H 0.125 0.875 23 H 0.164 0.836 24 H 0.098 0.902 25 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 7.159 -6.445 -1.989 9.836 hybrid contribution -0.125 0.518 -0.605 0.806 sum 7.034 -5.927 -2.594 9.557 Atomic orbital electron populations 1.69980 1.06571 1.29142 1.39245 1.24414 0.94786 0.98804 0.88600 0.87850 0.83556 0.84552 0.81805 1.17026 1.17880 1.14277 1.30452 1.15351 1.02301 1.67073 0.85856 1.01482 0.77477 0.70304 0.73356 1.93487 1.85519 1.75579 1.44918 1.93413 1.85120 1.75888 1.45624 1.55618 1.73769 1.31267 1.26133 1.22122 0.92653 0.92671 0.90357 0.87127 1.23729 0.97642 0.89490 1.02410 1.69152 0.90016 1.07284 1.49601 1.91781 1.16098 1.39617 1.77935 1.24241 0.98041 0.82475 1.00274 0.90820 0.75821 0.91772 0.87513 0.83616 0.90225 0.87048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.11 13.96 55.43 0.77 -22.34 15 2 C 0.15 4.30 5.47 -17.82 -0.10 4.20 15 3 Si 0.80 20.15 26.54 -169.99 -4.51 15.63 15 4 H -0.25 -6.05 7.11 56.52 0.40 -5.65 15 5 H -0.25 -5.90 7.11 56.52 0.40 -5.50 15 6 H -0.22 -5.65 5.61 56.52 0.32 -5.33 15 7 C -1.02 -27.12 10.26 30.60 0.31 -26.80 15 8 H 0.12 3.25 7.56 -52.49 -0.40 2.86 15 9 S 2.67 63.59 4.22 -107.50 -0.45 63.14 15 10 O -1.00 -26.08 16.02 -57.17 -0.92 -27.00 15 11 O -1.01 -25.77 16.21 -57.17 -0.93 -26.70 15 12 N -1.11 -19.95 5.47 -3.64 -0.02 -19.97 15 13 C 0.13 2.15 3.75 -66.46 -0.25 1.90 15 14 H 0.11 1.86 7.57 -51.93 -0.39 1.47 15 15 C 0.00 -0.01 7.59 -2.41 -0.02 -0.03 15 16 N -0.49 -6.40 8.43 -8.95 -0.08 -6.48 15 17 O -0.25 -3.90 12.77 -14.75 -0.19 -4.09 15 18 C 0.03 0.48 7.25 37.95 0.28 0.76 15 19 H 0.28 7.21 8.31 -40.82 -0.34 6.87 15 20 H 0.41 6.26 8.68 -34.47 -0.30 5.96 15 21 H 0.06 0.69 8.14 -51.93 -0.42 0.27 15 22 H 0.11 1.21 7.79 -51.93 -0.40 0.81 15 23 H 0.35 3.51 9.09 -39.29 -0.36 3.15 15 24 H 0.08 1.32 8.06 -51.93 -0.42 0.90 15 25 H 0.11 1.85 8.04 -51.93 -0.42 1.43 15 LS Contribution 230.98 15.07 3.48 3.48 Total: -1.00 -32.12 230.98 -4.94 -37.06 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -2.33 Total: 7.24 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: 0.22 Total: -19.98 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: 0.68 Total: -48.79 kcal Atomic # 8 Polarization: -55.75 SS G_CDS: -2.03 Total: -57.79 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -4.51 Total: 15.63 kcal Atomic # 16 Polarization: 63.59 SS G_CDS: -0.45 Total: 63.14 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -32.12 -4.94 -37.06 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722502244.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.921 kcal (2) G-P(sol) polarization free energy of solvation -32.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds