Wall clock time and date at job start Mon Mar 30 2020 02:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53000 * 109.46950 * 191.62097 * 3 2 1 5 5 H 1.08997 * 109.50589 * 304.92549 * 4 3 2 6 6 C 1.53126 * 109.50422 * 64.99929 * 4 3 2 7 7 C 1.53114 * 109.16239 * 177.59680 * 6 4 3 8 8 C 1.53037 * 109.31211 * 302.32855 * 7 6 4 9 9 N 1.46929 * 109.47910 * 59.15772 * 8 7 6 10 10 C 1.46900 * 110.98461 * 174.18240 * 9 8 7 11 11 C 1.53001 * 109.47139 * 314.22850 * 10 9 8 12 12 C 1.50697 * 109.47059 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00242 * 0.02562 * 12 11 10 14 14 C 1.37882 * 120.00148 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99617 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00228 * 179.97438 * 14 12 11 17 17 H 1.48509 * 109.46921 * 60.00352 * 16 14 12 18 18 H 1.48501 * 109.47102 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47315 * 300.00423 * 16 14 12 20 20 C 1.46850 * 111.22205 * 298.28247 * 9 8 7 21 21 H 4.44651 * 5.63327 * 180.02562 * 4 1 2 22 22 H 1.09000 * 109.47695 * 71.62416 * 3 2 1 23 23 H 1.08997 * 109.47645 * 311.62094 * 3 2 1 24 24 H 1.09006 * 109.51941 * 57.68972 * 6 4 3 25 25 H 1.09002 * 109.52329 * 297.50840 * 6 4 3 26 26 H 1.09002 * 109.50377 * 62.28979 * 7 6 4 27 27 H 1.09003 * 109.50316 * 182.36975 * 7 6 4 28 28 H 1.08994 * 109.46612 * 179.21753 * 8 7 6 29 29 H 1.09007 * 109.46083 * 299.18512 * 8 7 6 30 30 H 1.08995 * 109.47565 * 74.22887 * 10 9 8 31 31 H 1.09003 * 109.46901 * 194.23295 * 10 9 8 32 32 H 1.08995 * 109.47354 * 300.00111 * 11 10 9 33 33 H 1.08998 * 109.47078 * 60.00009 * 11 10 9 34 34 H 0.97009 * 120.00033 * 180.02562 * 15 14 12 35 35 H 1.08997 * 109.46198 * 301.72747 * 20 9 8 36 36 H 1.08995 * 109.45893 * 181.75622 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1553 1.4138 0.2906 5 1 2.7217 2.1115 -0.4259 6 6 2.7504 1.8214 1.7100 7 6 3.3150 3.2118 2.0140 8 6 4.8360 3.1881 1.8469 9 7 5.1718 2.7927 0.4722 10 6 6.6180 2.8920 0.2346 11 6 7.1356 4.2213 0.7875 12 6 8.6192 4.3235 0.5433 13 1 9.1406 3.5207 0.0432 14 6 9.3107 5.4422 0.9572 15 7 8.6756 6.4200 1.5656 16 14 11.1497 5.5685 0.6550 17 1 11.4174 5.5009 -0.8042 18 1 11.6521 6.8588 1.1916 19 1 11.8418 4.4460 1.3378 20 6 4.6809 1.4414 0.1728 21 1 -1.0503 -0.0005 0.0001 22 1 3.0095 -0.3231 -0.9752 23 1 3.0097 -0.6817 0.7682 24 1 3.1508 1.1015 2.4238 25 1 1.6632 1.8450 1.7860 26 1 2.8844 3.9381 1.3246 27 1 3.0657 3.4899 3.0380 28 1 5.2392 4.1803 2.0492 29 1 5.2670 2.4715 2.5462 30 1 7.1260 2.0678 0.7353 31 1 6.8145 2.8429 -0.8365 32 1 6.6278 5.0456 0.2868 33 1 6.9391 4.2705 1.8585 34 1 9.1620 7.2073 1.8565 35 1 5.1126 0.7332 0.8799 36 1 4.9719 1.1657 -0.8408 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829773312.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:38 Heat of formation + Delta-G solvation = 32.796356 kcal Electronic energy + Delta-G solvation = -14811.479668 eV Core-core repulsion = 12489.100149 eV Total energy + Delta-G solvation = -2322.379520 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.98391 -35.47361 -33.39605 -32.28053 -31.18465 -29.23279 -26.68816 -25.06637 -22.81380 -22.28284 -19.90622 -19.31536 -18.04576 -16.50737 -15.30652 -14.81171 -14.53795 -14.40887 -14.27651 -13.93276 -13.21481 -12.91845 -12.61763 -12.40504 -12.06590 -11.84813 -11.10277 -11.01415 -10.89669 -10.64952 -10.57071 -10.40414 -10.23605 -10.07317 -9.92666 -9.81889 -9.26184 -9.05851 -8.33063 -7.64549 -5.99497 -4.01797 2.76506 2.79611 3.33929 3.38245 3.40656 4.24718 4.43760 4.59042 4.89467 5.04006 5.11486 5.36310 5.43470 5.58760 5.60067 5.68019 5.73370 5.86247 5.96201 5.99121 6.06324 6.17919 6.20496 6.36033 6.39447 6.48557 6.63973 6.68444 6.95437 7.54212 7.57717 7.65195 7.82804 7.87460 8.06644 8.44010 9.04688 9.61760 11.11852 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.068572 B = 0.004987 C = 0.004742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.233332 B = 5613.380253 C = 5903.377395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.171 4.171 3 C -0.012 4.012 4 C -0.079 4.079 5 H 0.081 0.919 6 C -0.113 4.113 7 C -0.117 4.117 8 C 0.050 3.950 9 N -0.539 5.539 10 C 0.063 3.937 11 C 0.021 3.979 12 C -0.522 4.522 13 H 0.054 0.946 14 C 0.058 3.942 15 N -0.894 5.894 16 Si 0.893 3.107 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.061 3.939 21 H 0.214 0.786 22 H 0.087 0.913 23 H 0.084 0.916 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.094 0.906 29 H 0.025 0.975 30 H 0.019 0.981 31 H 0.062 0.938 32 H 0.025 0.975 33 H 0.021 0.979 34 H 0.261 0.739 35 H 0.028 0.972 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.590 -10.757 -0.815 16.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.171 4.171 3 C -0.049 4.049 4 C -0.097 4.097 5 H 0.100 0.900 6 C -0.150 4.150 7 C -0.155 4.155 8 C -0.078 4.078 9 N -0.264 5.264 10 C -0.064 4.064 11 C -0.016 4.016 12 C -0.561 4.561 13 H 0.072 0.928 14 C -0.143 4.143 15 N -0.533 5.533 16 Si 0.721 3.279 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.068 4.068 21 H 0.231 0.769 22 H 0.106 0.894 23 H 0.103 0.897 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.112 0.888 29 H 0.043 0.957 30 H 0.037 0.963 31 H 0.080 0.920 32 H 0.043 0.957 33 H 0.039 0.961 34 H 0.071 0.929 35 H 0.046 0.954 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.770 -10.248 -1.049 16.408 hybrid contribution 1.241 -0.462 0.409 1.386 sum -11.529 -10.710 -0.640 15.749 Atomic orbital electron populations 1.24828 0.95903 1.01501 1.02026 1.23143 0.94526 0.99802 0.99631 1.18833 0.84676 0.98377 1.02984 1.21164 0.95712 0.94748 0.98123 0.90042 1.21637 1.00070 0.97443 0.95899 1.21610 0.96093 0.96776 1.00990 1.22216 0.94602 1.02171 0.88790 1.62026 1.16628 1.23355 1.24374 1.22309 0.83675 1.00152 1.00256 1.19242 0.95271 0.90874 0.96254 1.21159 0.93496 1.03310 1.38161 0.92811 1.24992 0.98352 0.95751 0.95202 1.69956 1.35969 1.07633 1.39750 0.86649 0.85509 0.77199 0.78578 1.20203 1.21278 1.20308 1.22056 0.93513 0.90627 1.00579 0.76902 0.89445 0.89734 0.92513 0.92293 0.91328 0.91996 0.88829 0.95676 0.96295 0.91966 0.95691 0.96132 0.92933 0.95378 0.91119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -2.34 19.25 29.55 0.57 -1.77 16 2 C -0.17 -1.98 12.36 -37.12 -0.46 -2.44 16 3 C -0.01 -0.13 5.19 -29.52 -0.15 -0.28 16 4 C -0.08 -1.01 2.33 -90.54 -0.21 -1.22 16 5 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 6 C -0.11 -1.45 5.05 -26.61 -0.13 -1.59 16 7 C -0.12 -1.70 6.09 -26.65 -0.16 -1.86 16 8 C 0.05 0.89 4.85 -3.79 -0.02 0.87 16 9 N -0.54 -9.97 4.81 -234.60 -1.13 -11.10 16 10 C 0.06 1.34 5.21 -3.82 -0.02 1.32 16 11 C 0.02 0.54 4.22 -27.88 -0.12 0.42 16 12 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 13 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -26.88 13.29 55.43 0.74 -26.15 16 16 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 C 0.06 0.90 4.71 -3.83 -0.02 0.88 16 21 H 0.21 1.47 7.80 -54.08 -0.42 1.05 16 22 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.72 7.47 -51.93 -0.39 0.33 16 26 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.09 1.91 5.82 -51.93 -0.30 1.60 16 29 H 0.02 0.45 8.14 -51.92 -0.42 0.02 16 30 H 0.02 0.40 8.08 -51.93 -0.42 -0.02 16 31 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.02 0.56 6.21 -51.93 -0.32 0.24 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.99 8.12 -51.93 -0.42 0.57 16 LS Contribution 293.76 15.07 4.43 4.43 Total: -1.00 -30.20 293.76 -8.17 -38.36 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -6.04 Total: -2.98 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: -1.14 Total: -19.25 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: -0.39 Total: -37.25 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.20 -8.17 -38.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829773312.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.158 kcal (2) G-P(sol) polarization free energy of solvation -30.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds