Wall clock time and date at job start Mon Mar 30 2020 02:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 H 1.09000 * 109.53849 * 199.27082 * 3 2 1 5 5 C 1.53119 * 109.50336 * 319.37078 * 3 2 1 6 6 C 1.53118 * 109.21238 * 177.62262 * 5 3 2 7 7 C 1.53032 * 109.28172 * 302.31534 * 6 5 3 8 8 N 1.46842 * 109.52417 * 59.18020 * 7 6 5 9 9 C 1.46899 * 111.00024 * 174.16162 * 8 7 6 10 10 H 1.09008 * 109.47007 * 178.42318 * 9 8 7 11 11 C 1.52998 * 109.47394 * 58.42661 * 9 8 7 12 12 C 1.52999 * 109.47182 * 298.42396 * 9 8 7 13 13 C 1.50706 * 109.47119 * 295.54991 * 12 9 8 14 14 H 1.08000 * 120.00082 * 4.86734 * 13 12 9 15 15 C 1.37875 * 120.00023 * 184.86781 * 13 12 9 16 16 N 1.31519 * 120.00006 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99997 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46953 * 60.00029 * 17 15 13 19 19 H 1.48498 * 109.46929 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47240 * 300.00128 * 17 15 13 21 21 C 1.46846 * 111.19695 * 298.25878 * 8 7 6 22 22 H 4.18843 * 15.02346 * 0.02562 * 4 2 1 23 23 H 1.09007 * 109.52459 * 57.69187 * 5 3 2 24 24 H 1.08998 * 109.52195 * 297.56429 * 5 3 2 25 25 H 1.09003 * 109.50267 * 62.26168 * 6 5 3 26 26 H 1.09002 * 109.50301 * 182.33036 * 6 5 3 27 27 H 1.09002 * 109.46196 * 179.19721 * 7 6 5 28 28 H 1.08999 * 109.46167 * 299.15915 * 7 6 5 29 29 H 1.08995 * 109.47076 * 180.02562 * 11 9 8 30 30 H 1.09003 * 109.46993 * 300.00210 * 11 9 8 31 31 H 1.09004 * 109.47103 * 59.99517 * 11 9 8 32 32 H 1.08995 * 109.47003 * 55.54731 * 12 9 8 33 33 H 1.09002 * 109.47065 * 175.54982 * 12 9 8 34 34 H 0.96999 * 120.00037 * 179.97438 * 16 15 13 35 35 H 1.09003 * 109.46448 * 181.76277 * 21 8 7 36 36 H 1.09001 * 109.46130 * 301.73478 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0101 0.9705 0.3390 5 6 3.1577 -1.0945 0.9398 6 6 4.6877 -1.1273 0.8895 7 6 5.1409 -1.3661 -0.5525 8 7 4.6280 -0.2919 -1.4124 9 6 5.1573 -0.4122 -2.7774 10 1 4.7397 0.3791 -3.4000 11 6 4.7702 -1.7744 -3.3564 12 6 6.6817 -0.2858 -2.7462 13 6 7.0618 1.0957 -2.2790 14 1 6.2968 1.7855 -1.9544 15 6 8.3862 1.4789 -2.2659 16 7 9.3177 0.6391 -2.6616 17 14 8.8572 3.1915 -1.6874 18 1 8.4158 3.3781 -0.2818 19 1 10.3310 3.3538 -1.7697 20 1 8.1992 4.2043 -2.5514 21 6 3.1597 -0.2710 -1.4172 22 1 -1.0500 -0.0010 0.0002 23 1 2.7622 -2.0599 0.6238 24 1 2.8311 -0.8827 1.9579 25 1 5.0839 -0.1752 1.2426 26 1 5.0555 -1.9327 1.5253 27 1 6.2301 -1.3757 -0.5940 28 1 4.7559 -2.3247 -0.9001 29 1 5.1634 -1.8638 -4.3690 30 1 5.1877 -2.5658 -2.7337 31 1 3.6841 -1.8645 -3.3785 32 1 7.0938 -1.0270 -2.0616 33 1 7.0807 -0.4536 -3.7466 34 1 10.2494 0.9089 -2.6528 35 1 2.8098 0.5146 -2.0869 36 1 2.7839 -1.2349 -1.7607 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847018918.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:00 Heat of formation + Delta-G solvation = 40.957861 kcal Electronic energy + Delta-G solvation = -15380.447218 eV Core-core repulsion = 13058.421607 eV Total energy + Delta-G solvation = -2322.025610 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.10208 -35.43717 -32.95717 -32.28529 -30.14032 -29.31104 -27.28098 -24.14376 -23.45815 -22.50439 -20.38550 -18.60950 -17.78667 -16.12331 -15.58488 -14.77650 -14.48477 -14.12902 -13.96917 -13.73781 -13.21079 -12.74832 -12.14441 -11.99766 -11.76779 -11.48326 -11.40849 -11.06491 -10.83846 -10.65040 -10.55933 -10.41787 -10.25519 -9.92368 -9.86790 -9.65256 -9.12566 -8.96349 -8.23718 -7.46214 -5.87294 -3.85160 2.88916 2.93108 3.42263 3.45922 3.49713 4.28026 4.57685 4.74871 5.10821 5.16438 5.31794 5.49417 5.57981 5.65883 5.80888 5.85671 5.88069 5.95838 6.02463 6.09729 6.14889 6.19555 6.26194 6.36145 6.48681 6.63026 6.69770 6.79294 6.99534 7.56593 7.68072 7.71974 7.94170 8.03535 8.14603 8.60278 9.21621 9.76778 11.24620 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.030718 B = 0.007658 C = 0.007123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.301585 B = 3655.628849 C = 3930.210080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.163 4.163 3 C 0.018 3.982 4 H 0.101 0.899 5 C -0.107 4.107 6 C -0.116 4.116 7 C 0.052 3.948 8 N -0.511 5.511 9 C 0.087 3.913 10 H 0.070 0.930 11 C -0.185 4.185 12 C 0.029 3.971 13 C -0.492 4.492 14 H 0.062 0.938 15 C 0.051 3.949 16 N -0.904 5.904 17 Si 0.890 3.110 18 H -0.278 1.278 19 H -0.291 1.291 20 H -0.279 1.279 21 C 0.065 3.935 22 H 0.214 0.786 23 H 0.058 0.942 24 H 0.061 0.939 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.093 0.907 28 H 0.023 0.977 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.039 0.961 32 H 0.017 0.983 33 H 0.022 0.978 34 H 0.258 0.742 35 H 0.071 0.929 36 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.644 -4.066 4.799 14.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.164 4.164 3 C -0.001 4.001 4 H 0.119 0.881 5 C -0.145 4.145 6 C -0.154 4.154 7 C -0.075 4.075 8 N -0.234 5.234 9 C -0.020 4.020 10 H 0.089 0.911 11 C -0.244 4.244 12 C -0.008 4.008 13 C -0.530 4.530 14 H 0.080 0.920 15 C -0.149 4.149 16 N -0.545 5.545 17 Si 0.718 3.282 18 H -0.204 1.204 19 H -0.217 1.217 20 H -0.205 1.205 21 C -0.064 4.064 22 H 0.231 0.769 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.111 0.889 28 H 0.041 0.959 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.035 0.965 33 H 0.040 0.960 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -12.266 -3.628 4.961 13.720 hybrid contribution -0.204 0.164 -0.052 0.267 sum -12.470 -3.464 4.909 13.842 Atomic orbital electron populations 1.24790 0.95789 1.02340 1.01686 1.23256 0.94370 0.99212 0.99517 1.18430 0.83337 1.01156 0.97143 0.88093 1.21569 0.96645 0.97706 0.98533 1.21600 0.94055 1.02621 0.97129 1.22138 1.01942 0.91592 0.91867 1.61996 1.04461 1.45694 1.11238 1.21921 0.99738 0.93724 0.86644 0.91144 1.22529 0.99662 1.00515 1.01663 1.19235 0.86799 0.97538 0.97261 1.21166 0.91869 0.98662 1.41325 0.92004 1.25011 0.96857 0.96976 0.96021 1.69956 1.00382 1.35263 1.48931 0.86696 0.76885 0.85261 0.79318 1.20380 1.21694 1.20520 1.22017 0.89948 0.99922 0.94490 0.76898 0.92359 0.92027 0.90648 0.91806 0.88902 0.95879 0.92507 0.92911 0.94154 0.96479 0.95962 0.93282 0.91051 0.95304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -2.76 19.25 29.55 0.57 -2.19 16 2 C -0.16 -2.27 12.57 -37.12 -0.47 -2.74 16 3 C 0.02 0.26 2.74 -93.26 -0.26 0.00 16 4 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 5 C -0.11 -1.44 5.24 -26.61 -0.14 -1.57 16 6 C -0.12 -1.72 6.09 -26.65 -0.16 -1.88 16 7 C 0.05 0.92 4.63 -3.84 -0.02 0.90 16 8 N -0.51 -9.62 4.32 -226.61 -0.98 -10.60 16 9 C 0.09 1.78 2.30 -67.71 -0.16 1.63 16 10 H 0.07 1.47 8.07 -51.92 -0.42 1.05 16 11 C -0.18 -3.22 8.50 37.16 0.32 -2.90 16 12 C 0.03 0.72 4.27 -27.88 -0.12 0.60 16 13 C -0.49 -13.67 8.83 -34.44 -0.30 -13.97 16 14 H 0.06 1.72 7.73 -52.49 -0.41 1.31 16 15 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 16 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 17 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 C 0.06 1.05 4.29 -3.76 -0.02 1.03 16 22 H 0.21 1.74 7.80 -54.09 -0.42 1.32 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.09 1.88 5.97 -51.93 -0.31 1.57 16 28 H 0.02 0.38 6.61 -51.93 -0.34 0.04 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.05 0.91 6.51 -51.93 -0.34 0.57 16 31 H 0.04 0.63 6.67 -51.93 -0.35 0.28 16 32 H 0.02 0.45 6.10 -51.93 -0.32 0.13 16 33 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 35 H 0.07 1.16 8.07 -51.93 -0.42 0.74 16 36 H 0.03 0.46 6.75 -51.93 -0.35 0.11 16 LS Contribution 288.20 15.07 4.34 4.34 Total: -1.00 -29.59 288.20 -7.53 -37.13 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -5.76 Total: -1.74 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: -0.85 Total: -19.74 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: -0.24 Total: -36.99 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.59 -7.53 -37.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847018918.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.086 kcal (2) G-P(sol) polarization free energy of solvation -29.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds