Wall clock time and date at job start Mon Mar 30 2020 02:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 H 1.09000 * 109.53849 * 199.27082 * 3 2 1 5 5 C 1.53119 * 109.50336 * 319.37078 * 3 2 1 6 6 C 1.53118 * 109.21238 * 177.62262 * 5 3 2 7 7 C 1.53032 * 109.28172 * 302.31534 * 6 5 3 8 8 N 1.46842 * 109.52417 * 59.18020 * 7 6 5 9 9 C 1.46899 * 111.00024 * 174.16162 * 8 7 6 10 10 H 1.09008 * 109.47007 * 178.42318 * 9 8 7 11 11 C 1.52998 * 109.47394 * 58.42661 * 9 8 7 12 12 C 1.52999 * 109.47182 * 298.42396 * 9 8 7 13 13 C 1.50706 * 109.47119 * 295.54991 * 12 9 8 14 14 H 1.08000 * 120.00082 * 4.86734 * 13 12 9 15 15 C 1.37875 * 120.00023 * 184.86781 * 13 12 9 16 16 N 1.31519 * 120.00006 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99997 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46953 * 60.00029 * 17 15 13 19 19 H 1.48498 * 109.46929 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47240 * 300.00128 * 17 15 13 21 21 C 1.46846 * 111.19695 * 298.25878 * 8 7 6 22 22 H 4.18843 * 15.02346 * 0.02562 * 4 2 1 23 23 H 1.09007 * 109.52459 * 57.69187 * 5 3 2 24 24 H 1.08998 * 109.52195 * 297.56429 * 5 3 2 25 25 H 1.09003 * 109.50267 * 62.26168 * 6 5 3 26 26 H 1.09002 * 109.50301 * 182.33036 * 6 5 3 27 27 H 1.09002 * 109.46196 * 179.19721 * 7 6 5 28 28 H 1.08999 * 109.46167 * 299.15915 * 7 6 5 29 29 H 1.08995 * 109.47076 * 180.02562 * 11 9 8 30 30 H 1.09003 * 109.46993 * 300.00210 * 11 9 8 31 31 H 1.09004 * 109.47103 * 59.99517 * 11 9 8 32 32 H 1.08995 * 109.47003 * 55.54731 * 12 9 8 33 33 H 1.09002 * 109.47065 * 175.54982 * 12 9 8 34 34 H 0.96999 * 120.00037 * 179.97438 * 16 15 13 35 35 H 1.09003 * 109.46448 * 181.76277 * 21 8 7 36 36 H 1.09001 * 109.46130 * 301.73478 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0101 0.9705 0.3390 5 6 3.1577 -1.0945 0.9398 6 6 4.6877 -1.1273 0.8895 7 6 5.1409 -1.3661 -0.5525 8 7 4.6280 -0.2919 -1.4124 9 6 5.1573 -0.4122 -2.7774 10 1 4.7397 0.3791 -3.4000 11 6 4.7702 -1.7744 -3.3564 12 6 6.6817 -0.2858 -2.7462 13 6 7.0618 1.0957 -2.2790 14 1 6.2968 1.7855 -1.9544 15 6 8.3862 1.4789 -2.2659 16 7 9.3177 0.6391 -2.6616 17 14 8.8572 3.1915 -1.6874 18 1 8.4158 3.3781 -0.2818 19 1 10.3310 3.3538 -1.7697 20 1 8.1992 4.2043 -2.5514 21 6 3.1597 -0.2710 -1.4172 22 1 -1.0500 -0.0010 0.0002 23 1 2.7622 -2.0599 0.6238 24 1 2.8311 -0.8827 1.9579 25 1 5.0839 -0.1752 1.2426 26 1 5.0555 -1.9327 1.5253 27 1 6.2301 -1.3757 -0.5940 28 1 4.7559 -2.3247 -0.9001 29 1 5.1634 -1.8638 -4.3690 30 1 5.1877 -2.5658 -2.7337 31 1 3.6841 -1.8645 -3.3785 32 1 7.0938 -1.0270 -2.0616 33 1 7.0807 -0.4536 -3.7466 34 1 10.2494 0.9089 -2.6528 35 1 2.8098 0.5146 -2.0869 36 1 2.7839 -1.2349 -1.7607 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847018918.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:00 Heat of formation + Delta-G solvation = 23.749183 kcal Electronic energy + Delta-G solvation = -15381.193442 eV Core-core repulsion = 13058.421607 eV Total energy + Delta-G solvation = -2322.771835 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.47454 -36.85580 -34.70721 -33.75678 -31.56005 -30.64035 -29.13334 -25.64342 -25.00487 -24.06572 -21.77964 -20.03917 -18.84992 -18.30359 -16.97728 -16.54006 -15.99726 -15.44278 -15.29436 -15.07292 -14.63318 -14.33659 -13.77686 -13.62086 -13.21927 -13.08908 -12.83257 -12.73264 -12.49493 -12.35197 -12.05698 -11.79369 -11.67714 -11.53520 -11.08934 -11.07117 -10.87458 -10.78700 -10.44329 -8.92072 -8.08225 -6.12886 1.43145 1.45467 1.53094 1.90236 1.95925 2.48883 3.05732 3.27182 3.59753 3.93446 4.00874 4.14348 4.20195 4.39613 4.41406 4.46314 4.54703 4.65398 4.74406 4.80967 4.92901 5.01655 5.09729 5.13590 5.19834 5.21896 5.24661 5.32167 5.49450 5.54248 5.72870 5.92095 6.33778 6.45783 6.53716 6.74964 7.01128 7.53016 9.03566 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.030718 B = 0.007658 C = 0.007123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.301585 B = 3655.628849 C = 3930.210080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.211 4.211 3 C 0.022 3.978 4 H 0.088 0.912 5 C -0.098 4.098 6 C -0.111 4.111 7 C 0.055 3.945 8 N -0.529 5.529 9 C 0.094 3.906 10 H 0.062 0.938 11 C -0.174 4.174 12 C 0.035 3.965 13 C -0.501 4.501 14 H 0.058 0.942 15 C -0.004 4.004 16 N -0.940 5.940 17 Si 0.955 3.045 18 H -0.272 1.272 19 H -0.287 1.287 20 H -0.271 1.271 21 C 0.070 3.930 22 H 0.250 0.750 23 H 0.066 0.934 24 H 0.078 0.922 25 H 0.060 0.940 26 H 0.084 0.916 27 H 0.057 0.943 28 H 0.035 0.965 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.063 0.937 32 H -0.001 1.001 33 H -0.006 1.006 34 H 0.258 0.742 35 H 0.066 0.934 36 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.846 -3.926 5.771 16.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.211 4.211 3 C 0.004 3.996 4 H 0.106 0.894 5 C -0.136 4.136 6 C -0.149 4.149 7 C -0.073 4.073 8 N -0.253 5.253 9 C -0.014 4.014 10 H 0.081 0.919 11 C -0.233 4.233 12 C -0.002 4.002 13 C -0.539 4.539 14 H 0.076 0.924 15 C -0.200 4.200 16 N -0.582 5.582 17 Si 0.781 3.219 18 H -0.197 1.197 19 H -0.213 1.213 20 H -0.197 1.197 21 C -0.058 4.058 22 H 0.266 0.734 23 H 0.084 0.916 24 H 0.097 0.903 25 H 0.078 0.922 26 H 0.103 0.897 27 H 0.075 0.925 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.018 0.982 33 H 0.012 0.988 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -14.486 -3.487 5.938 16.039 hybrid contribution 0.422 0.106 -0.365 0.568 sum -14.064 -3.381 5.574 15.501 Atomic orbital electron populations 1.25668 0.96578 0.99932 0.99161 1.23251 0.94604 1.01452 1.01826 1.18251 0.84409 1.00905 0.96030 0.89414 1.21510 0.95056 0.97709 0.99313 1.21563 0.95418 1.02587 0.95312 1.22076 0.99773 0.91860 0.93566 1.61889 1.06472 1.46673 1.10275 1.21619 0.96336 0.95328 0.88093 0.91940 1.22385 1.01093 0.98425 1.01379 1.19083 0.90360 0.95927 0.94819 1.21471 0.91944 0.99687 1.40808 0.92365 1.25834 0.96933 1.00928 0.96261 1.70085 1.00650 1.37239 1.50211 0.85653 0.76614 0.80581 0.79047 1.19685 1.21308 1.19673 1.22002 0.87818 1.00092 0.95903 0.73375 0.91562 0.90296 0.92163 0.89744 0.92485 0.94706 0.92407 0.92906 0.91838 0.98248 0.98791 0.93282 0.91550 0.94533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.01 19.25 74.32 1.43 -2.58 16 2 C -0.21 -5.36 12.57 31.12 0.39 -4.97 16 3 C 0.02 0.62 2.74 -12.50 -0.03 0.59 16 4 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 5 C -0.10 -2.43 5.24 30.67 0.16 -2.27 16 6 C -0.11 -3.17 6.09 30.64 0.19 -2.99 16 7 C 0.05 1.93 4.63 86.33 0.40 2.33 16 8 N -0.53 -19.99 4.32 -870.86 -3.77 -23.75 16 9 C 0.09 3.90 2.30 44.91 0.10 4.01 16 10 H 0.06 2.65 8.07 -2.38 -0.02 2.63 16 11 C -0.17 -5.95 8.50 71.98 0.61 -5.34 16 12 C 0.04 1.84 4.27 29.85 0.13 1.97 16 13 C -0.50 -28.54 8.83 25.60 0.23 -28.31 16 14 H 0.06 3.30 7.73 -2.91 -0.02 3.27 16 15 C 0.00 -0.21 5.46 84.65 0.46 0.26 16 16 N -0.94 -57.75 13.29 21.45 0.28 -57.46 16 17 Si 0.95 45.66 29.54 68.60 2.03 47.68 16 18 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 19 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 20 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 21 C 0.07 2.18 4.29 86.37 0.37 2.55 16 22 H 0.25 2.83 7.80 -4.42 -0.03 2.80 16 23 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 24 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.06 1.89 8.14 -2.39 -0.02 1.88 16 26 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.06 2.40 5.97 -2.39 -0.01 2.38 16 28 H 0.03 1.13 6.61 -2.39 -0.02 1.11 16 29 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.05 1.79 6.51 -2.39 -0.02 1.77 16 31 H 0.06 1.87 6.67 -2.38 -0.02 1.86 16 32 H 0.00 -0.04 6.10 -2.39 -0.01 -0.05 16 33 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 34 H 0.26 15.11 8.31 -92.71 -0.77 14.33 16 35 H 0.07 2.11 8.07 -2.39 -0.02 2.09 16 36 H 0.04 1.09 6.75 -2.39 -0.02 1.07 16 Total: -1.00 -64.30 288.20 4.01 -60.29 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: 1.03 Total: 8.00 kcal Atomic # 6 Polarization: -39.19 SS G_CDS: 4.44 Total: -34.76 kcal Atomic # 7 Polarization: -77.73 SS G_CDS: -3.48 Total: -81.21 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.68 kcal Total: -64.30 4.01 -60.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847018918.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.038 kcal (2) G-P(sol) polarization free energy of solvation -64.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds