Wall clock time and date at job start Mon Mar 30 2020 02:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 H 1.09005 * 109.50685 * 23.20237 * 3 2 1 5 5 C 1.53129 * 109.50426 * 143.27786 * 3 2 1 6 6 C 1.53123 * 109.15931 * 177.55460 * 5 3 2 7 7 C 1.53039 * 109.31189 * 302.40768 * 6 5 3 8 8 N 1.46842 * 109.52266 * 59.15550 * 7 6 5 9 9 C 1.46910 * 110.99703 * 174.16402 * 8 7 6 10 10 C 1.53001 * 109.47153 * 66.04611 * 9 8 7 11 11 C 1.53003 * 109.46899 * 179.97438 * 10 9 8 12 12 C 1.50695 * 109.46799 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00554 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99950 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00201 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 120.00041 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.46913 * 90.00156 * 16 14 12 18 18 H 1.48499 * 109.47043 * 210.00174 * 16 14 12 19 19 H 1.48500 * 109.47075 * 330.00243 * 16 14 12 20 20 C 1.46849 * 111.20050 * 298.25785 * 8 7 6 21 21 H 4.18794 * 15.03198 * 0.02562 * 4 2 1 22 22 H 1.09000 * 109.49266 * 57.67152 * 5 3 2 23 23 H 1.08995 * 109.55725 * 297.47898 * 5 3 2 24 24 H 1.09002 * 109.50371 * 182.44317 * 6 5 3 25 25 H 1.09003 * 109.50070 * 62.36477 * 6 5 3 26 26 H 1.08995 * 109.46501 * 179.17754 * 7 6 5 27 27 H 1.09009 * 109.45500 * 299.14277 * 7 6 5 28 28 H 1.08996 * 109.46709 * 186.04933 * 9 8 7 29 29 H 1.09002 * 109.46552 * 306.04948 * 9 8 7 30 30 H 1.08995 * 109.47022 * 300.00315 * 10 9 8 31 31 H 1.09001 * 109.46710 * 59.99819 * 10 9 8 32 32 H 1.08996 * 109.46893 * 300.00280 * 11 10 9 33 33 H 1.09002 * 109.46622 * 60.00450 * 11 10 9 34 34 H 0.97001 * 120.00639 * 179.97438 * 15 14 12 35 35 H 1.09001 * 109.46071 * 181.75754 * 20 8 7 36 36 H 1.08995 * 109.46417 * 301.72694 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0103 -0.9436 -0.4048 5 6 3.1567 1.1579 -0.8631 6 6 4.6866 1.1884 -0.8084 7 6 5.1383 1.3269 0.6473 8 7 4.6251 0.1956 1.4301 9 6 5.1531 0.2213 2.8008 10 6 4.6082 1.4485 3.5343 11 6 5.1576 1.4749 4.9621 12 6 4.6203 2.6833 5.6847 13 1 3.9541 3.3645 5.1764 14 6 4.9802 2.9197 6.9944 15 7 4.5110 3.9740 7.6253 16 14 6.1332 1.7418 7.8735 17 1 7.5376 2.1791 7.6692 18 1 5.8226 1.7366 9.3256 19 1 5.9559 0.3735 7.3244 20 6 3.1568 0.1738 1.4321 21 1 -1.0501 -0.0007 -0.0008 22 1 2.7597 2.0987 -0.4818 23 1 2.8318 1.0154 -1.8937 24 1 5.0545 2.0365 -1.3859 25 1 5.0842 0.2635 -1.2263 26 1 6.2274 1.3343 0.6905 27 1 4.7523 2.2591 1.0601 28 1 4.8446 -0.6826 3.3260 29 1 6.2416 0.2701 2.7700 30 1 4.9166 2.3524 3.0091 31 1 3.5197 1.3997 3.5650 32 1 4.8487 0.5710 5.4869 33 1 6.2461 1.5235 4.9316 34 1 4.7639 4.1402 8.5469 35 1 2.8068 -0.6566 2.0454 36 1 2.7802 1.1112 1.8413 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847022079.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:32 Heat of formation + Delta-G solvation = 33.778212 kcal Electronic energy + Delta-G solvation = -14853.002069 eV Core-core repulsion = 12530.665126 eV Total energy + Delta-G solvation = -2322.336943 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.30002 -35.40611 -33.48221 -32.54649 -30.89802 -30.07383 -26.94752 -24.31287 -23.60851 -21.91036 -20.66447 -19.16759 -18.11561 -16.72157 -15.62131 -15.17023 -14.70392 -14.38014 -14.25841 -13.94816 -13.35783 -13.15351 -12.62531 -12.46624 -12.01366 -11.79208 -11.46269 -11.14840 -11.08119 -10.83342 -10.71739 -10.62841 -10.06553 -10.03885 -9.87924 -9.78526 -9.66152 -9.22208 -8.53548 -7.94348 -6.04020 -4.02100 2.78876 2.83487 3.30865 3.38207 3.42215 4.03316 4.45264 4.45666 4.84985 4.91854 5.00567 5.25123 5.29966 5.41341 5.56668 5.58955 5.63878 5.73197 5.87627 5.93789 5.96291 6.01382 6.08147 6.12932 6.16825 6.34034 6.47622 6.60498 6.86792 7.25610 7.28302 7.32526 7.44077 7.61499 7.79944 8.54607 9.00586 9.58563 11.09585 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.036110 B = 0.005799 C = 0.005455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.214735 B = 4826.968276 C = 5131.744892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.174 4.174 3 C 0.022 3.978 4 H 0.097 0.903 5 C -0.111 4.111 6 C -0.115 4.115 7 C 0.048 3.952 8 N -0.538 5.538 9 C 0.051 3.949 10 C -0.138 4.138 11 C -0.010 4.010 12 C -0.520 4.520 13 H 0.069 0.931 14 C 0.065 3.935 15 N -0.905 5.905 16 Si 0.881 3.119 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.265 1.265 20 C 0.061 3.939 21 H 0.216 0.784 22 H 0.064 0.936 23 H 0.065 0.935 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.042 0.958 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.015 0.985 33 H 0.011 0.989 34 H 0.263 0.737 35 H 0.076 0.924 36 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.808 -8.208 -16.374 18.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.175 4.175 3 C 0.004 3.996 4 H 0.115 0.885 5 C -0.149 4.149 6 C -0.153 4.153 7 C -0.080 4.080 8 N -0.261 5.261 9 C -0.076 4.076 10 C -0.177 4.177 11 C -0.048 4.048 12 C -0.558 4.558 13 H 0.087 0.913 14 C -0.136 4.136 15 N -0.544 5.544 16 Si 0.708 3.292 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.190 1.190 20 C -0.067 4.067 21 H 0.233 0.767 22 H 0.083 0.917 23 H 0.083 0.917 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.060 0.940 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.034 0.966 33 H 0.029 0.971 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.619 -8.551 -16.430 18.592 hybrid contribution 0.026 0.314 1.076 1.121 sum -1.593 -8.238 -15.354 17.497 Atomic orbital electron populations 1.24865 0.95874 1.01486 1.00881 1.23066 0.94266 0.99934 1.00220 1.18341 0.83848 1.00422 0.96997 0.88508 1.21594 0.96048 0.97886 0.99349 1.21591 0.94876 1.02302 0.96500 1.22136 1.00070 0.92732 0.93100 1.62212 1.07152 1.42774 1.13972 1.22356 0.99711 0.99010 0.86548 1.22079 1.00438 0.96877 0.98330 1.19497 0.95777 0.97512 0.92053 1.21158 1.29239 1.08306 0.97139 0.91301 1.25051 0.95960 0.95146 0.97425 1.69920 1.45154 1.27556 1.11782 0.86755 0.81401 0.82283 0.78711 1.20293 1.21408 1.18971 1.22034 0.88273 1.01821 0.94557 0.76724 0.91712 0.91668 0.91349 0.91124 0.90680 0.94007 0.91001 0.90953 0.92782 0.92669 0.96635 0.97079 0.92768 0.90522 0.93493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.45 19.25 29.55 0.57 -1.88 16 2 C -0.17 -2.23 12.56 -37.13 -0.47 -2.70 16 3 C 0.02 0.27 2.73 -93.32 -0.25 0.02 16 4 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 5 C -0.11 -1.23 5.24 -26.60 -0.14 -1.36 16 6 C -0.11 -1.22 6.09 -26.65 -0.16 -1.38 16 7 C 0.05 0.62 5.05 -3.84 -0.02 0.60 16 8 N -0.54 -7.74 4.86 -234.66 -1.14 -8.88 16 9 C 0.05 0.83 5.36 -3.82 -0.02 0.81 16 10 C -0.14 -2.76 4.45 -26.73 -0.12 -2.88 16 11 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 12 C -0.52 -15.14 9.66 -34.44 -0.33 -15.47 16 13 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 14 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 15 N -0.90 -28.35 13.96 55.43 0.77 -27.58 16 16 Si 0.88 21.99 27.47 -169.99 -4.67 17.32 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 19 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 20 C 0.06 0.87 4.07 -3.83 -0.02 0.85 16 21 H 0.22 1.69 7.80 -54.09 -0.42 1.27 16 22 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 0.94 8.06 -51.93 -0.42 0.52 16 27 H 0.04 0.61 6.76 -51.92 -0.35 0.26 16 28 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.07 1.14 8.06 -51.93 -0.42 0.72 16 30 H 0.05 1.09 6.68 -51.93 -0.35 0.75 16 31 H 0.05 1.13 6.51 -51.93 -0.34 0.80 16 32 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 33 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 34 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 35 H 0.08 1.10 8.12 -51.93 -0.42 0.68 16 36 H 0.05 0.75 6.61 -51.93 -0.34 0.41 16 LS Contribution 289.54 15.07 4.36 4.36 Total: -1.00 -31.13 289.54 -7.79 -38.92 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -5.95 Total: -2.23 kcal Atomic # 6 Polarization: -20.74 SS G_CDS: -1.17 Total: -21.91 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: -0.37 Total: -36.46 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.13 -7.79 -38.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847022079.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.697 kcal (2) G-P(sol) polarization free energy of solvation -31.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds