Wall clock time and date at job start Mon Mar 30 2020 02:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 H 1.09005 * 109.50685 * 23.20237 * 3 2 1 5 5 C 1.53129 * 109.50426 * 143.27786 * 3 2 1 6 6 C 1.53123 * 109.15931 * 177.55460 * 5 3 2 7 7 C 1.53039 * 109.31189 * 302.40768 * 6 5 3 8 8 N 1.46842 * 109.52266 * 59.15550 * 7 6 5 9 9 C 1.46910 * 110.99703 * 174.16402 * 8 7 6 10 10 C 1.53001 * 109.47153 * 66.04611 * 9 8 7 11 11 C 1.53003 * 109.46899 * 179.97438 * 10 9 8 12 12 C 1.50695 * 109.46799 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00554 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99950 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00201 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 120.00041 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.46913 * 90.00156 * 16 14 12 18 18 H 1.48499 * 109.47043 * 210.00174 * 16 14 12 19 19 H 1.48500 * 109.47075 * 330.00243 * 16 14 12 20 20 C 1.46849 * 111.20050 * 298.25785 * 8 7 6 21 21 H 4.18794 * 15.03198 * 0.02562 * 4 2 1 22 22 H 1.09000 * 109.49266 * 57.67152 * 5 3 2 23 23 H 1.08995 * 109.55725 * 297.47898 * 5 3 2 24 24 H 1.09002 * 109.50371 * 182.44317 * 6 5 3 25 25 H 1.09003 * 109.50070 * 62.36477 * 6 5 3 26 26 H 1.08995 * 109.46501 * 179.17754 * 7 6 5 27 27 H 1.09009 * 109.45500 * 299.14277 * 7 6 5 28 28 H 1.08996 * 109.46709 * 186.04933 * 9 8 7 29 29 H 1.09002 * 109.46552 * 306.04948 * 9 8 7 30 30 H 1.08995 * 109.47022 * 300.00315 * 10 9 8 31 31 H 1.09001 * 109.46710 * 59.99819 * 10 9 8 32 32 H 1.08996 * 109.46893 * 300.00280 * 11 10 9 33 33 H 1.09002 * 109.46622 * 60.00450 * 11 10 9 34 34 H 0.97001 * 120.00639 * 179.97438 * 15 14 12 35 35 H 1.09001 * 109.46071 * 181.75754 * 20 8 7 36 36 H 1.08995 * 109.46417 * 301.72694 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0103 -0.9436 -0.4048 5 6 3.1567 1.1579 -0.8631 6 6 4.6866 1.1884 -0.8084 7 6 5.1383 1.3269 0.6473 8 7 4.6251 0.1956 1.4301 9 6 5.1531 0.2213 2.8008 10 6 4.6082 1.4485 3.5343 11 6 5.1576 1.4749 4.9621 12 6 4.6203 2.6833 5.6847 13 1 3.9541 3.3645 5.1764 14 6 4.9802 2.9197 6.9944 15 7 4.5110 3.9740 7.6253 16 14 6.1332 1.7418 7.8735 17 1 7.5376 2.1791 7.6692 18 1 5.8226 1.7366 9.3256 19 1 5.9559 0.3735 7.3244 20 6 3.1568 0.1738 1.4321 21 1 -1.0501 -0.0007 -0.0008 22 1 2.7597 2.0987 -0.4818 23 1 2.8318 1.0154 -1.8937 24 1 5.0545 2.0365 -1.3859 25 1 5.0842 0.2635 -1.2263 26 1 6.2274 1.3343 0.6905 27 1 4.7523 2.2591 1.0601 28 1 4.8446 -0.6826 3.3260 29 1 6.2416 0.2701 2.7700 30 1 4.9166 2.3524 3.0091 31 1 3.5197 1.3997 3.5650 32 1 4.8487 0.5710 5.4869 33 1 6.2461 1.5235 4.9316 34 1 4.7639 4.1402 8.5469 35 1 2.8068 -0.6566 2.0454 36 1 2.7802 1.1112 1.8413 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847022079.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:32 Heat of formation + Delta-G solvation = 14.322347 kcal Electronic energy + Delta-G solvation = -14853.845739 eV Core-core repulsion = 12530.665126 eV Total energy + Delta-G solvation = -2323.180613 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.40546 -36.74141 -35.15853 -33.92854 -32.56460 -31.06934 -28.62981 -25.78200 -24.62335 -23.33433 -22.27265 -20.37413 -19.09124 -18.85116 -16.79385 -16.38506 -16.24287 -15.76224 -15.58414 -15.25883 -14.64569 -14.57679 -14.34295 -13.74326 -13.50371 -13.09427 -12.82780 -12.79568 -12.43606 -12.09530 -11.86894 -11.80142 -11.75090 -11.53212 -11.42246 -11.32810 -10.99276 -10.89325 -10.78647 -9.22591 -8.32303 -6.37511 1.34900 1.37348 1.49794 1.84312 1.90887 2.34742 2.95526 3.03023 3.52937 3.87282 3.94461 4.07738 4.10715 4.26891 4.33724 4.37914 4.55435 4.58984 4.73653 4.77356 4.82083 4.95965 5.02350 5.05167 5.06456 5.10357 5.17936 5.24145 5.42393 5.47074 5.52972 5.63337 6.05709 6.13981 6.26039 6.70215 6.70542 7.27507 8.84897 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.036110 B = 0.005799 C = 0.005455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.214735 B = 4826.968276 C = 5131.744892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.215 4.215 3 C 0.027 3.973 4 H 0.107 0.893 5 C -0.109 4.109 6 C -0.107 4.107 7 C 0.043 3.957 8 N -0.529 5.529 9 C 0.060 3.940 10 C -0.127 4.127 11 C -0.007 4.007 12 C -0.537 4.537 13 H 0.022 0.978 14 C 0.001 3.999 15 N -0.954 5.954 16 Si 0.957 3.043 17 H -0.264 1.264 18 H -0.284 1.284 19 H -0.244 1.244 20 C 0.063 3.937 21 H 0.246 0.754 22 H 0.049 0.951 23 H 0.083 0.917 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.019 0.981 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.043 0.957 31 H 0.039 0.961 32 H 0.021 0.979 33 H 0.023 0.977 34 H 0.267 0.733 35 H 0.072 0.928 36 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.721 -10.298 -17.467 20.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.215 4.215 3 C 0.009 3.991 4 H 0.125 0.875 5 C -0.147 4.147 6 C -0.145 4.145 7 C -0.085 4.085 8 N -0.252 5.252 9 C -0.068 4.068 10 C -0.166 4.166 11 C -0.045 4.045 12 C -0.575 4.575 13 H 0.041 0.959 14 C -0.195 4.195 15 N -0.595 5.595 16 Si 0.779 3.221 17 H -0.188 1.188 18 H -0.209 1.209 19 H -0.167 1.167 20 C -0.066 4.066 21 H 0.262 0.738 22 H 0.067 0.933 23 H 0.102 0.898 24 H 0.104 0.896 25 H 0.102 0.898 26 H 0.103 0.897 27 H 0.038 0.962 28 H 0.096 0.904 29 H 0.104 0.896 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.040 0.960 33 H 0.041 0.959 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -0.537 -10.647 -17.554 20.537 hybrid contribution -0.435 1.065 1.388 1.803 sum -0.972 -9.582 -16.165 18.817 Atomic orbital electron populations 1.25708 0.96821 1.00112 0.99259 1.23445 0.95043 1.01299 1.01717 1.18291 0.83904 1.01339 0.95550 0.87464 1.21594 0.96385 0.96662 1.00016 1.21570 0.94406 1.03750 0.94727 1.22265 1.00580 0.91194 0.94493 1.62289 1.07137 1.43097 1.12656 1.22249 1.00318 0.96971 0.87227 1.21934 0.99455 0.98670 0.96549 1.19451 0.96244 0.95110 0.93722 1.21521 1.28734 1.09469 0.97789 0.95949 1.26115 0.97943 0.97159 0.98321 1.70084 1.47038 1.29910 1.12441 0.85563 0.78974 0.80361 0.77178 1.18847 1.20950 1.16692 1.22013 0.88162 1.00228 0.96148 0.73794 0.93258 0.89838 0.89586 0.89811 0.89722 0.96238 0.90354 0.89636 0.93843 0.94225 0.96035 0.95878 0.92449 0.90915 0.96161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.33 19.25 74.32 1.43 -2.90 16 2 C -0.21 -5.30 12.56 31.12 0.39 -4.91 16 3 C 0.03 0.64 2.73 -12.55 -0.03 0.61 16 4 H 0.11 2.27 8.14 -2.38 -0.02 2.25 16 5 C -0.11 -2.26 5.24 30.68 0.16 -2.09 16 6 C -0.11 -2.04 6.09 30.65 0.19 -1.85 16 7 C 0.04 1.07 5.05 86.33 0.44 1.50 16 8 N -0.53 -14.60 4.86 -896.34 -4.35 -18.95 16 9 C 0.06 1.88 5.36 86.30 0.46 2.34 16 10 C -0.13 -5.11 4.45 30.60 0.14 -4.98 16 11 C -0.01 -0.35 4.04 29.85 0.12 -0.23 16 12 C -0.54 -32.15 9.66 25.60 0.25 -31.90 16 13 H 0.02 1.49 7.99 -2.91 -0.02 1.46 16 14 C 0.00 0.06 5.47 84.65 0.46 0.52 16 15 N -0.95 -61.36 13.96 21.45 0.30 -61.06 16 16 Si 0.96 44.81 27.47 68.60 1.88 46.69 16 17 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 18 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 19 H -0.24 -10.50 6.54 99.48 0.65 -9.85 16 20 C 0.06 1.77 4.07 86.32 0.35 2.13 16 21 H 0.25 3.25 7.80 -4.41 -0.03 3.21 16 22 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.08 1.42 8.14 -2.39 -0.02 1.41 16 26 H 0.08 1.96 8.06 -2.39 -0.02 1.94 16 27 H 0.02 0.57 6.76 -2.38 -0.02 0.56 16 28 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.09 2.47 8.06 -2.39 -0.02 2.45 16 30 H 0.04 1.81 6.68 -2.39 -0.02 1.79 16 31 H 0.04 1.69 6.51 -2.39 -0.02 1.67 16 32 H 0.02 1.00 7.20 -2.39 -0.02 0.98 16 33 H 0.02 1.05 7.57 -2.39 -0.02 1.03 16 34 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 35 H 0.07 2.07 8.12 -2.39 -0.02 2.05 16 36 H 0.02 0.67 6.61 -2.39 -0.02 0.66 16 Total: -1.00 -68.57 289.54 3.14 -65.43 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: 0.96 Total: 9.65 kcal Atomic # 6 Polarization: -46.11 SS G_CDS: 4.35 Total: -41.76 kcal Atomic # 7 Polarization: -75.95 SS G_CDS: -4.06 Total: -80.01 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.88 Total: 46.69 kcal Total: -68.57 3.14 -65.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847022079.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.749 kcal (2) G-P(sol) polarization free energy of solvation -68.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds