Wall clock time and date at job start Mon Mar 30 2020 03:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.35983 * 125.42759 * 2 1 4 4 C 1.39567 * 107.29522 * 180.02562 * 3 2 1 5 5 C 1.39396 * 106.48787 * 0.02562 * 4 3 2 6 6 C 1.40785 * 126.17280 * 179.97438 * 5 4 3 7 7 N 1.31436 * 120.00363 * 180.02562 * 6 5 4 8 8 N 1.40105 * 119.99986 * 179.97438 * 7 6 5 9 9 C 1.34777 * 119.99999 * 179.97438 * 8 7 6 10 10 O 1.22116 * 120.00097 * 0.02562 * 9 8 7 11 11 C 1.39595 * 120.00125 * 179.97438 * 9 8 7 12 12 H 1.07999 * 119.99833 * 0.02562 * 11 9 8 13 13 C 1.40028 * 120.00256 * 180.02562 * 11 9 8 14 14 N 1.30712 * 119.99780 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 120.00232 * 180.02562 * 13 11 9 16 16 H 1.48492 * 109.47256 * 59.99574 * 15 13 11 17 17 H 1.48503 * 109.47158 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46819 * 299.99728 * 15 13 11 19 19 O 1.34045 * 125.42736 * 180.33343 * 2 1 3 20 20 H 1.08997 * 109.46875 * 89.99938 * 1 2 3 21 21 H 1.08998 * 109.46971 * 209.99686 * 1 2 3 22 22 H 1.08995 * 109.46946 * 330.00097 * 1 2 3 23 23 H 1.07999 * 126.35478 * 359.97438 * 3 2 1 24 24 H 1.07997 * 126.76081 * 179.97438 * 4 3 2 25 25 H 1.08008 * 119.99323 * 359.97438 * 6 5 4 26 26 H 0.96999 * 119.99953 * 359.97438 * 8 7 6 27 27 H 0.97005 * 119.99973 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2953 1.1081 0.0000 4 6 3.6217 0.6737 -0.0006 5 6 3.5817 -0.7197 -0.0015 6 6 4.6938 -1.5829 -0.0029 7 7 4.5152 -2.8850 -0.0042 8 7 5.6220 -3.7440 -0.0061 9 6 5.4388 -5.0793 -0.0069 10 8 4.3080 -5.5404 -0.0064 11 6 6.5416 -5.9351 -0.0093 12 1 7.5416 -5.5273 -0.0101 13 6 6.3512 -7.3224 -0.0107 14 7 5.1409 -7.8160 -0.0102 15 14 7.8269 -8.4677 -0.0132 16 1 8.6482 -8.2195 1.1988 17 1 7.3596 -9.8773 -0.0137 18 1 8.6461 -8.2168 -1.2262 19 8 2.2841 -1.0923 -0.0064 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 1.9577 2.1339 -0.0004 24 1 4.5052 1.2948 -0.0011 25 1 5.6939 -1.1750 -0.0037 26 1 6.5202 -3.3777 -0.0068 27 1 5.0090 -8.7770 -0.0108 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000254702888.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:56 Heat of formation + Delta-G solvation = 13.094174 kcal Electronic energy + Delta-G solvation = -13912.672717 eV Core-core repulsion = 11252.346746 eV Total energy + Delta-G solvation = -2660.325971 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.079 amu Computer time = 2.35 seconds Orbital eigenvalues (eV) -42.11498 -37.69334 -35.37145 -32.95547 -32.78331 -32.11579 -30.38329 -27.43778 -25.86281 -22.30962 -21.50898 -20.23066 -19.60043 -17.83664 -16.21536 -15.92450 -15.87295 -15.47673 -14.45698 -13.91519 -13.31896 -13.07274 -12.90432 -12.73666 -12.70759 -12.45310 -11.71603 -11.44922 -11.43269 -10.95644 -10.68710 -10.43608 -9.69222 -9.68534 -9.07495 -8.53940 -7.80527 -7.05769 -6.43348 -5.01606 1.30140 2.53402 3.04015 3.08411 3.11341 3.18060 3.39859 3.67230 4.05789 4.39818 4.92048 5.08757 5.24221 5.44368 5.48527 5.64963 5.73097 5.76450 5.94006 6.08683 6.33129 6.54587 6.74648 7.16145 7.42556 7.80346 7.92017 8.55312 8.71198 9.23795 10.34653 10.60170 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.070405 B = 0.005036 C = 0.004712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.606319 B = 5558.676313 C = 5941.138591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.026 4.026 3 C -0.209 4.209 4 C -0.196 4.196 5 C 0.058 3.942 6 C 0.025 3.975 7 N -0.167 5.167 8 N -0.581 5.581 9 C 0.554 3.446 10 O -0.552 6.552 11 C -0.533 4.533 12 H 0.072 0.928 13 C 0.086 3.914 14 N -0.741 5.741 15 Si 0.920 3.080 16 H -0.265 1.265 17 H -0.277 1.277 18 H -0.265 1.265 19 O -0.147 6.147 20 H 0.078 0.922 21 H 0.076 0.924 22 H 0.085 0.915 23 H 0.146 0.854 24 H 0.150 0.850 25 H 0.134 0.866 26 H 0.371 0.629 27 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.422 13.721 0.022 13.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.079 4.079 3 C -0.228 4.228 4 C -0.220 4.220 5 C 0.005 3.995 6 C -0.180 4.180 7 N 0.019 4.981 8 N -0.328 5.328 9 C 0.363 3.637 10 O -0.432 6.432 11 C -0.569 4.569 12 H 0.090 0.910 13 C -0.138 4.138 14 N -0.368 5.368 15 Si 0.743 3.257 16 H -0.189 1.189 17 H -0.202 1.202 18 H -0.189 1.189 19 O -0.041 6.041 20 H 0.097 0.903 21 H 0.095 0.905 22 H 0.103 0.897 23 H 0.164 0.836 24 H 0.168 0.832 25 H 0.151 0.849 26 H 0.207 0.793 27 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.021 11.962 0.019 12.337 hybrid contribution 2.071 0.431 -0.009 2.116 sum -0.950 12.393 0.011 12.429 Atomic orbital electron populations 1.20275 0.85531 1.03816 1.03283 1.22822 0.94108 0.84276 1.06714 1.21324 0.92774 0.98777 1.09934 1.22081 0.98078 0.92285 1.09573 1.19447 0.81083 0.92277 1.06676 1.21880 0.94735 0.90528 1.10903 1.75382 1.17654 1.02595 1.02441 1.48228 1.02769 1.06681 1.75096 1.16567 0.91293 0.76996 0.78828 1.90784 1.25353 1.73068 1.53953 1.19470 0.93272 0.91139 1.53048 0.91018 1.25775 0.96847 0.98682 0.92469 1.70065 1.21914 1.13730 1.31051 0.86226 0.81106 0.78580 0.79750 1.18934 1.20180 1.18927 1.84215 1.16324 1.34060 1.69465 0.90321 0.90527 0.89655 0.83636 0.83199 0.84883 0.79347 0.91313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.74 10.41 36.01 0.37 -0.36 15 2 C -0.03 -0.37 7.32 -35.11 -0.26 -0.63 15 3 C -0.21 -2.70 10.76 -39.90 -0.43 -3.13 15 4 C -0.20 -2.73 10.94 -38.66 -0.42 -3.15 15 5 C 0.06 1.02 6.98 -38.19 -0.27 0.75 15 6 C 0.02 0.46 10.72 -16.76 -0.18 0.28 15 7 N -0.17 -3.98 11.04 30.92 0.34 -3.63 15 8 N -0.58 -14.19 6.26 28.71 0.18 -14.01 15 9 C 0.55 16.37 7.62 -15.75 -0.12 16.25 15 10 O -0.55 -18.88 15.17 4.81 0.07 -18.81 15 11 C -0.53 -14.77 9.20 -38.40 -0.35 -15.13 15 12 H 0.07 1.75 7.85 -52.49 -0.41 1.34 15 13 C 0.09 2.35 5.49 -17.36 -0.10 2.25 15 14 N -0.74 -21.81 11.68 55.55 0.65 -21.16 15 15 Si 0.92 19.29 29.56 -169.99 -5.02 14.27 15 16 H -0.26 -5.38 7.11 56.52 0.40 -4.97 15 17 H -0.28 -5.66 7.11 56.52 0.40 -5.25 15 18 H -0.26 -5.37 7.11 56.52 0.40 -4.97 15 19 O -0.15 -2.79 10.63 4.44 0.05 -2.74 15 20 H 0.08 0.70 8.14 -51.93 -0.42 0.28 15 21 H 0.08 0.80 8.14 -51.93 -0.42 0.37 15 22 H 0.08 0.64 8.14 -51.93 -0.42 0.21 15 23 H 0.15 1.41 8.06 -52.49 -0.42 0.99 15 24 H 0.15 1.62 8.06 -52.49 -0.42 1.19 15 25 H 0.13 1.90 8.04 -52.48 -0.42 1.48 15 26 H 0.37 7.41 8.62 -182.59 -1.57 5.84 15 27 H 0.28 7.26 8.29 -40.82 -0.34 6.92 15 LS Contribution 258.42 15.07 3.89 3.89 Total: -1.00 -36.38 258.42 -5.24 -41.63 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -3.66 Total: 3.43 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -1.75 Total: -2.87 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 1.17 Total: -38.80 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: 0.12 Total: -21.55 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.27 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -36.38 -5.24 -41.63 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254702888.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.721 kcal (2) G-P(sol) polarization free energy of solvation -36.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.35 seconds