Wall clock time and date at job start Mon Mar 30 2020 03:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.35983 * 125.42759 * 2 1 4 4 C 1.39567 * 107.29522 * 180.02562 * 3 2 1 5 5 C 1.39396 * 106.48787 * 0.02562 * 4 3 2 6 6 C 1.40785 * 126.17280 * 179.97438 * 5 4 3 7 7 N 1.31436 * 120.00363 * 180.02562 * 6 5 4 8 8 N 1.40105 * 119.99986 * 179.97438 * 7 6 5 9 9 C 1.34777 * 119.99999 * 179.97438 * 8 7 6 10 10 O 1.22116 * 120.00097 * 0.02562 * 9 8 7 11 11 C 1.39595 * 120.00125 * 179.97438 * 9 8 7 12 12 H 1.07999 * 119.99833 * 0.02562 * 11 9 8 13 13 C 1.40028 * 120.00256 * 180.02562 * 11 9 8 14 14 N 1.30712 * 119.99780 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 120.00232 * 180.02562 * 13 11 9 16 16 H 1.48492 * 109.47256 * 59.99574 * 15 13 11 17 17 H 1.48503 * 109.47158 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46819 * 299.99728 * 15 13 11 19 19 O 1.34045 * 125.42736 * 180.33343 * 2 1 3 20 20 H 1.08997 * 109.46875 * 89.99938 * 1 2 3 21 21 H 1.08998 * 109.46971 * 209.99686 * 1 2 3 22 22 H 1.08995 * 109.46946 * 330.00097 * 1 2 3 23 23 H 1.07999 * 126.35478 * 359.97438 * 3 2 1 24 24 H 1.07997 * 126.76081 * 179.97438 * 4 3 2 25 25 H 1.08008 * 119.99323 * 359.97438 * 6 5 4 26 26 H 0.96999 * 119.99953 * 359.97438 * 8 7 6 27 27 H 0.97005 * 119.99973 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2953 1.1081 0.0000 4 6 3.6217 0.6737 -0.0006 5 6 3.5817 -0.7197 -0.0015 6 6 4.6938 -1.5829 -0.0029 7 7 4.5152 -2.8850 -0.0042 8 7 5.6220 -3.7440 -0.0061 9 6 5.4388 -5.0793 -0.0069 10 8 4.3080 -5.5404 -0.0064 11 6 6.5416 -5.9351 -0.0093 12 1 7.5416 -5.5273 -0.0101 13 6 6.3512 -7.3224 -0.0107 14 7 5.1409 -7.8160 -0.0102 15 14 7.8269 -8.4677 -0.0132 16 1 8.6482 -8.2195 1.1988 17 1 7.3596 -9.8773 -0.0137 18 1 8.6461 -8.2168 -1.2262 19 8 2.2841 -1.0923 -0.0064 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 1.9577 2.1339 -0.0004 24 1 4.5052 1.2948 -0.0011 25 1 5.6939 -1.1750 -0.0037 26 1 6.5202 -3.3777 -0.0068 27 1 5.0090 -8.7770 -0.0108 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000254702888.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:54 Heat of formation + Delta-G solvation = -15.384937 kcal Electronic energy + Delta-G solvation = -13913.907664 eV Core-core repulsion = 11252.346746 eV Total energy + Delta-G solvation = -2661.560918 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.079 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.33991 -39.66237 -37.14943 -34.78041 -34.12605 -33.67920 -31.82964 -29.19508 -27.39428 -23.72522 -22.71808 -22.01097 -21.00302 -19.65847 -17.87282 -17.73159 -17.18833 -16.98443 -15.96064 -15.40760 -15.21127 -14.76061 -13.93111 -13.86012 -13.79406 -13.68147 -13.25995 -13.17717 -12.76891 -12.66560 -12.65143 -12.07386 -11.19424 -11.02758 -10.84836 -10.13974 -10.03992 -8.59147 -8.45569 -7.15483 -0.04499 1.36683 1.38087 1.45624 1.56101 2.00313 2.03927 2.10102 2.33019 2.41884 3.61560 3.84717 3.98068 4.14237 4.30630 4.57016 4.72465 4.82632 4.87277 4.96669 5.12610 5.16790 5.29588 5.70776 5.77891 5.97490 6.23545 6.63075 6.86801 7.39848 8.37525 8.54960 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.070405 B = 0.005036 C = 0.004712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.606319 B = 5558.676313 C = 5941.138591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.025 4.025 3 C -0.211 4.211 4 C -0.144 4.144 5 C -0.021 4.021 6 C 0.085 3.915 7 N -0.265 5.265 8 N -0.589 5.589 9 C 0.539 3.461 10 O -0.621 6.621 11 C -0.557 4.557 12 H 0.099 0.901 13 C 0.027 3.973 14 N -0.800 5.800 15 Si 1.015 2.985 16 H -0.249 1.249 17 H -0.271 1.271 18 H -0.249 1.249 19 O -0.192 6.192 20 H 0.094 0.906 21 H 0.067 0.933 22 H 0.121 0.879 23 H 0.188 0.812 24 H 0.191 0.809 25 H 0.176 0.824 26 H 0.387 0.613 27 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.136 16.639 0.014 16.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.079 4.079 3 C -0.230 4.230 4 C -0.167 4.167 5 C -0.072 4.072 6 C -0.121 4.121 7 N -0.075 5.075 8 N -0.336 5.336 9 C 0.350 3.650 10 O -0.507 6.507 11 C -0.593 4.593 12 H 0.117 0.883 13 C -0.192 4.192 14 N -0.427 5.427 15 Si 0.832 3.168 16 H -0.173 1.173 17 H -0.195 1.195 18 H -0.173 1.173 19 O -0.087 6.087 20 H 0.112 0.888 21 H 0.086 0.914 22 H 0.139 0.861 23 H 0.206 0.794 24 H 0.208 0.792 25 H 0.193 0.807 26 H 0.226 0.774 27 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.693 14.946 0.011 15.041 hybrid contribution 1.434 0.056 -0.008 1.435 sum -0.259 15.002 0.003 15.004 Atomic orbital electron populations 1.20551 0.82894 1.05161 1.04664 1.23925 0.95951 0.84039 1.03964 1.21884 0.91919 1.00197 1.08991 1.22703 1.00079 0.90602 1.03348 1.19801 0.80732 0.93816 1.12884 1.22655 0.97213 0.89316 1.02903 1.75454 1.17686 1.04664 1.09730 1.47309 1.03789 1.05681 1.76784 1.17003 0.90886 0.78858 0.78225 1.90707 1.27585 1.75137 1.57304 1.20062 0.94075 0.92074 1.53114 0.88253 1.27236 1.00658 1.00571 0.90746 1.70251 1.25500 1.14589 1.32410 0.84833 0.75908 0.75359 0.80734 1.17273 1.19535 1.17261 1.84204 1.17533 1.36558 1.70449 0.88786 0.91411 0.86071 0.79437 0.79219 0.80739 0.77422 0.90738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.37 10.41 71.24 0.74 -0.63 15 2 C -0.03 -0.68 7.32 25.16 0.18 -0.49 15 3 C -0.21 -4.51 10.76 22.07 0.24 -4.27 15 4 C -0.14 -3.38 10.94 22.87 0.25 -3.13 15 5 C -0.02 -0.72 6.98 23.17 0.16 -0.56 15 6 C 0.09 3.13 10.72 85.38 0.92 4.04 15 7 N -0.27 -13.29 11.04 -56.09 -0.62 -13.91 15 8 N -0.59 -30.25 6.26 -181.13 -1.13 -31.38 15 9 C 0.54 33.84 7.62 84.57 0.64 34.49 15 10 O -0.62 -45.76 15.17 -5.69 -0.09 -45.84 15 11 C -0.56 -31.93 9.20 23.03 0.21 -31.72 15 12 H 0.10 4.89 7.85 -2.91 -0.02 4.86 15 13 C 0.03 1.48 5.49 85.29 0.47 1.95 15 14 N -0.80 -49.50 11.68 21.83 0.26 -49.25 15 15 Si 1.01 39.72 29.56 68.60 2.03 41.75 15 16 H -0.25 -9.05 7.11 99.48 0.71 -8.34 15 17 H -0.27 -10.19 7.11 99.48 0.71 -9.48 15 18 H -0.25 -9.04 7.11 99.48 0.71 -8.34 15 19 O -0.19 -7.32 10.63 -7.04 -0.07 -7.39 15 20 H 0.09 1.43 8.14 -2.39 -0.02 1.41 15 21 H 0.07 1.35 8.14 -2.39 -0.02 1.33 15 22 H 0.12 1.30 8.14 -2.39 -0.02 1.28 15 23 H 0.19 2.41 8.06 -2.91 -0.02 2.39 15 24 H 0.19 2.88 8.06 -2.91 -0.02 2.86 15 25 H 0.18 4.57 8.04 -2.91 -0.02 4.55 15 26 H 0.39 15.99 8.62 -213.32 -1.84 14.15 15 27 H 0.28 15.58 8.29 -92.70 -0.77 14.81 15 Total: -1.00 -88.40 258.42 3.55 -84.86 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: -0.64 Total: 21.48 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: 3.82 Total: -0.32 kcal Atomic # 7 Polarization: -93.04 SS G_CDS: -1.50 Total: -94.54 kcal Atomic # 8 Polarization: -53.07 SS G_CDS: -0.16 Total: -53.24 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.75 kcal Total: -88.40 3.55 -84.86 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254702888.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.473 kcal (2) G-P(sol) polarization free energy of solvation -88.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds