Wall clock time and date at job start Mon Mar 30 2020 02:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38361 * 119.36474 * 2 1 4 4 C 1.38924 * 121.20651 * 180.02562 * 3 2 1 5 5 O 1.35608 * 120.05700 * 180.02562 * 4 3 2 6 6 C 1.39979 * 119.89050 * 359.67029 * 4 3 2 7 7 C 1.46922 * 120.60470 * 180.30012 * 6 4 3 8 8 O 1.21569 * 119.99929 * 270.30103 * 7 6 4 9 9 O 1.34840 * 119.99913 * 90.30404 * 7 6 4 10 10 C 1.46510 * 118.78598 * 0.59735 * 6 4 3 11 11 C 1.40839 * 120.56913 * 179.69666 * 10 6 4 12 12 H 1.07992 * 120.00149 * 24.88326 * 11 10 6 13 13 C 1.40283 * 119.99423 * 204.87369 * 11 10 6 14 14 N 1.30622 * 120.00150 * 16.87557 * 13 11 10 15 15 Si 1.86799 * 119.99735 * 196.86255 * 13 11 10 16 16 H 1.48496 * 109.47523 * 265.18255 * 15 13 11 17 17 H 1.48502 * 109.47247 * 25.18353 * 15 13 11 18 18 H 1.48503 * 109.46787 * 145.17895 * 15 13 11 19 19 C 1.37689 * 119.36277 * 180.02562 * 2 1 3 20 20 H 1.08995 * 109.47362 * 269.97274 * 1 2 3 21 21 H 1.08998 * 109.47422 * 29.97960 * 1 2 3 22 22 H 1.09002 * 109.47081 * 149.97213 * 1 2 3 23 23 H 1.08002 * 119.39593 * 0.02562 * 3 2 1 24 24 H 0.96699 * 114.00466 * 90.00374 * 5 4 3 25 25 H 0.96703 * 117.00244 * 179.97438 * 9 7 6 26 26 H 0.96999 * 120.00059 * 180.02562 * 14 13 11 27 27 H 1.07995 * 120.00707 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1855 1.2058 0.0000 4 6 3.5740 1.2505 -0.0005 5 8 4.2151 2.4454 0.0000 6 6 4.3102 0.0600 0.0059 7 6 5.7791 0.0889 0.0121 8 8 6.3912 0.1035 -1.0382 9 8 6.4484 0.0992 1.1826 10 6 3.5892 -1.2154 -0.0003 11 6 4.2924 -2.4357 -0.0005 12 1 5.2955 -2.4810 0.3969 13 6 3.6896 -3.5924 -0.5170 14 7 2.6372 -3.4934 -1.2845 15 14 4.3920 -5.2741 -0.1074 16 1 5.3194 -5.6994 -1.1863 17 1 5.1295 -5.2024 1.1796 18 1 3.2854 -6.2574 0.0104 19 6 2.1821 -1.2000 -0.0005 20 1 -0.3634 -0.0005 1.0276 21 1 -0.3634 0.8901 -0.5135 22 1 -0.3633 -0.8897 -0.5143 23 1 1.6254 2.1293 0.0004 24 1 4.4015 2.7915 0.8835 25 1 7.4141 0.1180 1.1361 26 1 2.2202 -4.2932 -1.6413 27 1 1.6319 -2.1293 -0.0005 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260727930.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:01 Heat of formation + Delta-G solvation = -152.617393 kcal Electronic energy + Delta-G solvation = -14884.251529 eV Core-core repulsion = 12184.447014 eV Total energy + Delta-G solvation = -2699.804515 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.072 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -41.14016 -39.63053 -37.79529 -36.85863 -35.71049 -33.08884 -30.74877 -28.27282 -27.57189 -23.98956 -23.04090 -21.53464 -19.57293 -18.95315 -18.19339 -17.84422 -17.34056 -16.56860 -15.87951 -15.47054 -15.16075 -14.77533 -14.19742 -13.93604 -13.54195 -13.48080 -13.17311 -12.92533 -12.50045 -12.35428 -12.19494 -12.05887 -11.91451 -11.67646 -11.17023 -11.04761 -9.42315 -9.19937 -8.83380 -6.58389 0.55085 0.84385 1.31891 1.34718 1.44747 1.51218 2.13217 2.43641 2.54601 3.35105 3.45378 4.33671 4.52166 4.67994 4.83125 4.87388 4.95542 5.03869 5.08287 5.27926 5.40721 5.58701 5.73049 5.79335 6.02007 6.07619 6.40936 6.62515 6.70635 7.01267 7.13888 8.11474 Molecular weight = 222.07amu Principal moments of inertia in cm(-1) A = 0.022323 B = 0.013108 C = 0.008819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.036216 B = 2135.556105 C = 3174.367409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.042 4.042 3 C -0.269 4.269 4 C 0.168 3.832 5 O -0.512 6.512 6 C -0.314 4.314 7 C 0.573 3.427 8 O -0.561 6.561 9 O -0.509 6.509 10 C 0.132 3.868 11 C -0.479 4.479 12 H 0.072 0.928 13 C 0.040 3.960 14 N -0.795 5.795 15 Si 0.986 3.014 16 H -0.265 1.265 17 H -0.256 1.256 18 H -0.252 1.252 19 C -0.197 4.197 20 H 0.081 0.919 21 H 0.075 0.925 22 H 0.060 0.940 23 H 0.129 0.871 24 H 0.402 0.598 25 H 0.417 0.583 26 H 0.299 0.701 27 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.358 1.384 5.578 5.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.043 4.043 3 C -0.288 4.288 4 C 0.124 3.876 5 O -0.325 6.325 6 C -0.317 4.317 7 C 0.419 3.581 8 O -0.452 6.452 9 O -0.322 6.322 10 C 0.128 3.872 11 C -0.506 4.506 12 H 0.090 0.910 13 C -0.180 4.180 14 N -0.418 5.418 15 Si 0.805 3.195 16 H -0.190 1.190 17 H -0.180 1.180 18 H -0.175 1.175 19 C -0.216 4.216 20 H 0.100 0.900 21 H 0.094 0.906 22 H 0.079 0.921 23 H 0.147 0.853 24 H 0.260 0.740 25 H 0.277 0.723 26 H 0.111 0.889 27 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.837 1.204 4.568 5.068 hybrid contribution 1.232 -0.492 0.318 1.364 sum -0.605 0.712 4.886 4.975 Atomic orbital electron populations 1.20759 0.89687 1.02630 1.02728 1.19894 0.97032 0.92184 0.95173 1.20579 0.91760 0.97971 1.18536 1.18165 0.90406 0.82265 0.96788 1.84637 1.78986 1.34088 1.34767 1.20340 0.88047 0.95129 1.28192 1.20807 0.88909 0.68006 0.80392 1.90752 1.71091 1.48409 1.34976 1.84755 1.27339 1.85341 1.34738 1.18596 0.92641 0.89682 0.86253 1.19797 1.01585 0.93641 1.35571 0.91029 1.26885 0.94367 1.05241 0.91495 1.69731 1.17766 1.34171 1.20118 0.85133 0.79358 0.75054 0.79959 1.18965 1.17956 1.17546 1.21170 0.93017 0.97250 1.10192 0.90046 0.90635 0.92062 0.85310 0.74000 0.72322 0.88931 0.86268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.32 9.97 71.24 0.71 -2.61 15 2 C -0.04 -1.84 5.86 -19.97 -0.12 -1.95 15 3 C -0.27 -11.54 9.55 22.46 0.21 -11.33 15 4 C 0.17 7.80 6.72 22.86 0.15 7.96 15 5 O -0.51 -20.47 12.96 -89.19 -1.16 -21.62 15 6 C -0.31 -16.28 5.95 -18.42 -0.11 -16.39 15 7 C 0.57 28.06 6.25 70.10 0.44 28.50 15 8 O -0.56 -30.41 17.90 19.61 0.35 -30.06 15 9 O -0.51 -19.54 13.44 -57.53 -0.77 -20.31 15 10 C 0.13 7.14 5.73 -19.88 -0.11 7.03 15 11 C -0.48 -25.74 8.59 23.40 0.20 -25.54 15 12 H 0.07 3.82 7.38 -2.91 -0.02 3.80 15 13 C 0.04 1.93 5.17 85.37 0.44 2.37 15 14 N -0.79 -39.33 10.96 21.88 0.24 -39.09 15 15 Si 0.99 36.54 29.59 68.60 2.03 38.57 15 16 H -0.26 -9.69 7.11 99.48 0.71 -8.99 15 17 H -0.26 -9.36 7.11 99.48 0.71 -8.65 15 18 H -0.25 -8.49 7.11 99.48 0.71 -7.79 15 19 C -0.20 -9.90 8.31 22.75 0.19 -9.71 15 20 H 0.08 2.30 8.14 -2.39 -0.02 2.28 15 21 H 0.07 2.14 8.07 -2.39 -0.02 2.12 15 22 H 0.06 1.99 8.07 -2.39 -0.02 1.97 15 23 H 0.13 4.72 8.06 -2.91 -0.02 4.70 15 24 H 0.40 11.44 9.06 -74.06 -0.67 10.77 15 25 H 0.42 11.05 9.11 -74.06 -0.67 10.38 15 26 H 0.30 13.04 8.29 -92.71 -0.77 12.27 15 27 H 0.12 6.06 6.19 -2.91 -0.02 6.04 15 Total: -1.00 -67.88 250.66 2.58 -65.30 By element: Atomic # 1 Polarization: 29.01 SS G_CDS: -0.11 Total: 28.90 kcal Atomic # 6 Polarization: -23.69 SS G_CDS: 2.01 Total: -21.68 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.24 Total: -39.09 kcal Atomic # 8 Polarization: -70.42 SS G_CDS: -1.58 Total: -72.00 kcal Atomic # 14 Polarization: 36.54 SS G_CDS: 2.03 Total: 38.57 kcal Total: -67.88 2.58 -65.30 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260727930.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.318 kcal (2) G-P(sol) polarization free energy of solvation -67.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds