Wall clock time and date at job start Mon Mar 30 2020 02:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36021 * 116.99856 * 2 1 4 4 C 1.38182 * 119.86153 * 359.97438 * 3 2 1 5 5 C 1.40403 * 120.37069 * 180.02562 * 4 3 2 6 6 C 1.46962 * 119.95678 * 179.97438 * 5 4 3 7 7 O 1.21284 * 120.00266 * 179.97438 * 6 5 4 8 8 C 1.39335 * 120.08627 * 359.69830 * 5 4 3 9 9 C 1.40349 * 119.70896 * 0.55163 * 8 5 4 10 10 C 1.41276 * 120.17783 * 179.74640 * 9 8 5 11 11 H 1.07998 * 120.00358 * 154.39537 * 10 9 8 12 12 C 1.39903 * 120.00115 * 334.39797 * 10 9 8 13 13 N 1.30869 * 120.00195 * 334.63516 * 12 10 9 14 14 Si 1.86800 * 119.99998 * 154.63533 * 12 10 9 15 15 H 1.48500 * 109.47315 * 180.02562 * 14 12 10 16 16 H 1.48508 * 109.46921 * 299.99779 * 14 12 10 17 17 H 1.48493 * 109.47464 * 59.99724 * 14 12 10 18 18 C 1.39107 * 119.85334 * 179.97438 * 3 2 1 19 19 O 1.35527 * 120.04718 * 0.02562 * 18 3 2 20 20 H 1.09004 * 109.47149 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.47109 * 300.00447 * 1 2 3 22 22 H 1.09005 * 109.46791 * 60.00388 * 1 2 3 23 23 H 1.07998 * 119.81161 * 0.02562 * 4 3 2 24 24 H 1.07998 * 120.00216 * 0.02562 * 6 5 4 25 25 H 1.07994 * 120.14131 * 180.29634 * 8 5 4 26 26 H 0.97003 * 120.00195 * 354.19390 * 13 12 10 27 27 H 0.96700 * 113.99992 * 269.97144 * 19 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2120 0.0000 4 6 1.2911 2.3690 -0.0005 5 6 1.9173 3.6257 -0.0011 6 6 1.1050 4.8504 -0.0022 7 8 1.6451 5.9363 -0.0022 8 6 3.3079 3.7131 0.0053 9 6 4.0786 2.5401 0.0005 10 6 5.4892 2.6173 0.0014 11 1 6.0744 1.8028 0.4023 12 6 6.1283 3.7487 -0.5169 13 7 5.5282 4.4841 -1.4179 14 14 7.8382 4.2099 0.0771 15 1 8.2897 5.4404 -0.6210 16 1 7.8038 4.4565 1.5412 17 1 8.7802 3.1001 -0.2159 18 6 3.4358 1.2813 0.0005 19 8 4.1720 0.1434 0.0005 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 0.2129 2.3063 -0.0005 24 1 0.0271 4.7835 -0.0022 25 1 3.7905 4.6792 0.0097 26 1 4.6779 4.1997 -1.7882 27 1 4.3857 -0.1868 0.8839 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642879222.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:11 Heat of formation + Delta-G solvation = -127.322392 kcal Electronic energy + Delta-G solvation = -14815.447620 eV Core-core repulsion = 12116.739979 eV Total energy + Delta-G solvation = -2698.707641 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.072 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.09009 -39.86363 -38.64505 -37.13952 -35.50603 -31.47758 -30.50802 -28.17906 -27.15695 -25.12578 -22.84948 -21.83566 -20.04776 -18.90912 -18.06739 -17.74660 -16.67374 -16.46053 -16.02838 -15.85352 -15.63153 -15.22311 -15.06485 -14.72830 -14.02785 -13.51849 -13.09271 -12.79953 -12.62715 -12.26208 -12.03726 -11.88368 -11.74854 -11.20308 -10.93633 -10.65428 -9.69362 -9.36448 -8.92303 -6.57832 -0.14108 0.77701 1.45752 1.48546 1.72535 1.77776 2.28072 2.54284 2.59650 3.25721 3.45635 3.72664 4.19478 4.42404 4.47927 4.52085 4.58992 4.77077 4.80325 5.08976 5.25460 5.45698 5.56690 5.61644 5.80707 5.98876 6.43795 6.52276 6.62612 6.72920 7.22800 7.91389 Molecular weight = 222.07amu Principal moments of inertia in cm(-1) A = 0.025860 B = 0.011051 C = 0.007998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.508969 B = 2533.115763 C = 3499.931304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.336 6.336 3 C 0.122 3.878 4 C -0.259 4.259 5 C -0.146 4.146 6 C 0.393 3.607 7 O -0.510 6.510 8 C -0.190 4.190 9 C 0.058 3.942 10 C -0.529 4.529 11 H 0.081 0.919 12 C 0.000 4.000 13 N -0.808 5.808 14 Si 1.120 2.880 15 H -0.272 1.272 16 H -0.260 1.260 17 H -0.254 1.254 18 C -0.051 4.051 19 O -0.490 6.490 20 H 0.118 0.882 21 H 0.066 0.934 22 H 0.061 0.939 23 H 0.160 0.840 24 H 0.161 0.839 25 H 0.095 0.905 26 H 0.282 0.718 27 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.739 -4.578 3.882 9.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.077 3.923 4 C -0.278 4.278 5 C -0.147 4.147 6 C 0.255 3.745 7 O -0.387 6.387 8 C -0.210 4.210 9 C 0.055 3.945 10 C -0.556 4.556 11 H 0.099 0.901 12 C -0.217 4.217 13 N -0.430 5.430 14 Si 0.935 3.065 15 H -0.196 1.196 16 H -0.185 1.185 17 H -0.178 1.178 18 C -0.098 4.098 19 O -0.298 6.298 20 H 0.136 0.864 21 H 0.085 0.915 22 H 0.079 0.921 23 H 0.178 0.822 24 H 0.176 0.824 25 H 0.113 0.887 26 H 0.094 0.906 27 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -6.280 -2.977 3.063 7.595 hybrid contribution -1.279 -1.257 0.471 1.854 sum -7.558 -4.234 3.534 9.357 Atomic orbital electron populations 1.23314 0.76966 1.05149 1.02200 1.86072 1.23196 1.26616 1.89126 1.19146 0.90925 0.85097 0.97161 1.20818 0.99934 0.89389 1.17690 1.20751 0.93952 0.96296 1.03693 1.24734 0.96577 0.85315 0.67894 1.90487 1.78592 1.32346 1.37246 1.21340 0.93534 0.97086 1.09025 1.18025 0.94582 0.90588 0.91341 1.20658 0.91905 1.05871 1.37195 0.90069 1.28624 1.09576 0.91478 0.92009 1.70603 1.16851 1.37529 1.18034 0.82992 0.68490 0.77670 0.77310 1.19644 1.18477 1.17773 1.18251 0.86625 0.85667 1.19248 1.84700 1.73185 1.39375 1.32527 0.86409 0.91538 0.92083 0.82215 0.82361 0.88726 0.90598 0.77531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.81 113.37 1.11 1.53 15 2 O -0.34 -12.41 10.27 -79.53 -0.82 -13.23 15 3 C 0.12 5.24 6.68 22.47 0.15 5.39 15 4 C -0.26 -9.74 8.77 22.78 0.20 -9.54 15 5 C -0.15 -6.24 5.86 -20.20 -0.12 -6.36 15 6 C 0.39 13.99 11.44 70.11 0.80 14.79 15 7 O -0.51 -22.76 17.14 -3.04 -0.05 -22.81 15 8 C -0.19 -9.97 7.48 23.05 0.17 -9.80 15 9 C 0.06 3.15 5.30 -21.25 -0.11 3.04 15 10 C -0.53 -28.98 8.64 23.42 0.20 -28.77 15 11 H 0.08 4.31 7.71 -2.91 -0.02 4.29 15 12 C 0.00 -0.02 4.93 85.24 0.42 0.40 15 13 N -0.81 -45.55 12.32 21.82 0.27 -45.28 15 14 Si 1.12 44.05 30.00 68.60 2.06 46.11 15 15 H -0.27 -10.59 7.11 99.48 0.71 -9.88 15 16 H -0.26 -9.61 7.11 99.48 0.71 -8.90 15 17 H -0.25 -9.08 7.11 99.48 0.71 -8.37 15 18 C -0.05 -2.56 6.75 23.24 0.16 -2.40 15 19 O -0.49 -23.19 12.53 -74.04 -0.93 -24.12 15 20 H 0.12 2.05 8.14 -2.39 -0.02 2.03 15 21 H 0.07 1.33 7.65 -2.39 -0.02 1.31 15 22 H 0.06 1.30 7.65 -2.38 -0.02 1.28 15 23 H 0.16 4.35 6.24 -2.91 -0.02 4.33 15 24 H 0.16 3.49 8.06 -2.91 -0.02 3.47 15 25 H 0.09 5.46 6.05 -2.91 -0.02 5.44 15 26 H 0.28 16.64 6.69 -92.71 -0.62 16.02 15 27 H 0.37 14.14 9.06 -74.06 -0.67 13.47 15 Total: -1.00 -70.74 246.48 4.21 -66.54 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: 0.69 Total: 24.51 kcal Atomic # 6 Polarization: -34.69 SS G_CDS: 2.98 Total: -31.71 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: 0.27 Total: -45.28 kcal Atomic # 8 Polarization: -58.36 SS G_CDS: -1.80 Total: -60.16 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.06 Total: 46.11 kcal Total: -70.74 4.21 -66.54 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642879222.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.785 kcal (2) G-P(sol) polarization free energy of solvation -70.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds