Wall clock time and date at job start Mon Mar 30 2020 02:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86800 * 120.00140 * 2 1 4 4 H 1.48501 * 109.47340 * 270.00328 * 3 2 1 5 5 H 1.48501 * 109.47032 * 30.00623 * 3 2 1 6 6 H 1.48500 * 109.46737 * 150.00463 * 3 2 1 7 7 C 1.39942 * 119.99753 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00434 * 164.11800 * 7 2 1 9 9 C 1.41397 * 120.00249 * 344.11253 * 7 2 1 10 10 C 1.40738 * 120.24005 * 333.66121 * 9 7 2 11 11 C 1.37604 * 119.74406 * 179.97438 * 10 9 7 12 12 C 1.38652 * 120.24512 * 0.02562 * 11 10 9 13 13 C 1.38617 * 120.50699 * 0.02562 * 12 11 10 14 14 C 1.37642 * 120.24427 * 359.73353 * 13 12 11 15 15 C 1.50702 * 120.12818 * 180.28271 * 14 13 12 16 16 H 1.09002 * 109.46689 * 215.24036 * 15 14 13 17 17 O 1.42901 * 109.46673 * 335.23552 * 15 14 13 18 18 C 1.50696 * 109.47118 * 95.23360 * 15 14 13 19 19 O 1.20824 * 120.00175 * 244.99927 * 18 15 14 20 20 O 1.34230 * 119.99565 * 65.00162 * 18 15 14 21 21 H 0.97001 * 119.99753 * 359.97438 * 1 2 3 22 22 H 1.07996 * 120.13078 * 359.95219 * 10 9 7 23 23 H 1.07993 * 119.87695 * 180.02562 * 11 10 9 24 24 H 1.08002 * 119.74674 * 180.02562 * 12 11 10 25 25 H 1.07999 * 119.87762 * 179.97438 * 13 12 11 26 26 H 0.96698 * 114.00176 * 60.00262 * 17 15 14 27 27 H 0.96705 * 116.99971 * 179.97438 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0465 -1.4001 5 1 1.4398 2.6526 0.7002 6 1 3.5399 1.4400 0.7000 7 6 2.0079 -1.2120 -0.0005 8 1 3.0570 -1.2298 -0.2565 9 6 1.3414 -2.4133 0.3341 10 6 0.2096 -2.3867 1.1702 11 6 -0.4315 -3.5618 1.4889 12 6 0.0341 -4.7688 0.9901 13 6 1.1485 -4.8071 0.1666 14 6 1.8025 -3.6435 -0.1693 15 6 3.0101 -3.6874 -1.0699 16 1 3.7232 -2.9240 -0.7588 17 8 3.6227 -4.9755 -0.9824 18 6 2.5855 -3.4287 -2.4924 19 8 2.7042 -4.2956 -3.3256 20 8 2.0754 -2.2349 -2.8339 21 1 -0.4850 0.8401 0.0004 22 1 -0.1542 -1.4477 1.5604 23 1 -1.3004 -3.5439 2.1299 24 1 -0.4755 -5.6863 1.2450 25 1 1.5026 -5.7529 -0.2159 26 1 3.0445 -5.7047 -1.2448 27 1 1.8176 -2.1159 -3.7583 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713754714.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:44 Heat of formation + Delta-G solvation = -126.964430 kcal Electronic energy + Delta-G solvation = -15149.551611 eV Core-core repulsion = 12450.859492 eV Total energy + Delta-G solvation = -2698.692119 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.072 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.84044 -37.83035 -36.10774 -35.09404 -33.72358 -30.78329 -29.43893 -26.73698 -25.18578 -21.60287 -21.03198 -19.89969 -17.60617 -17.55586 -16.88882 -15.95501 -15.21845 -14.96174 -14.25402 -13.96670 -13.32873 -12.81846 -12.66591 -12.52137 -11.82186 -11.51462 -11.22779 -11.11356 -11.03362 -10.86305 -10.55988 -10.52382 -9.91762 -9.64160 -9.27397 -9.22720 -7.54456 -7.48571 -6.84925 -4.46640 2.56673 2.76903 2.94338 3.03300 3.06760 3.16912 3.76151 3.87169 4.56205 4.88382 5.54662 5.78980 5.82688 6.02575 6.12828 6.33805 6.57607 6.97776 7.08879 7.11815 7.22757 7.44397 7.69463 7.82528 7.93600 7.98023 8.13540 8.48219 8.57869 8.75880 8.81838 10.09352 Molecular weight = 222.07amu Principal moments of inertia in cm(-1) A = 0.023612 B = 0.013455 C = 0.009773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.557294 B = 2080.496397 C = 2864.443530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.082 3.918 3 Si 0.906 3.094 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.260 1.260 7 C -0.442 4.442 8 H 0.079 0.921 9 C 0.133 3.867 10 C -0.159 4.159 11 C -0.100 4.100 12 C -0.242 4.242 13 C -0.074 4.074 14 C -0.248 4.248 15 C 0.186 3.814 16 H 0.135 0.865 17 O -0.540 6.540 18 C 0.464 3.536 19 O -0.544 6.544 20 O -0.480 6.480 21 H 0.281 0.719 22 H 0.120 0.880 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.376 0.624 27 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.643 -0.418 -1.188 2.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.137 4.137 3 Si 0.731 3.269 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.184 1.184 7 C -0.471 4.471 8 H 0.097 0.903 9 C 0.130 3.870 10 C -0.178 4.178 11 C -0.118 4.118 12 C -0.262 4.262 13 C -0.092 4.092 14 C -0.250 4.250 15 C 0.126 3.874 16 H 0.152 0.848 17 O -0.346 6.346 18 C 0.308 3.692 19 O -0.435 6.435 20 O -0.288 6.288 21 H 0.092 0.908 22 H 0.138 0.862 23 H 0.108 0.892 24 H 0.107 0.893 25 H 0.107 0.893 26 H 0.225 0.775 27 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 2.088 -0.170 -0.797 2.242 hybrid contribution -0.502 0.521 -0.934 1.182 sum 1.587 0.351 -1.731 2.374 Atomic orbital electron populations 1.69811 1.07607 1.29353 1.34459 1.25850 0.94672 1.01249 0.91960 0.86337 0.80663 0.80607 0.79329 1.19374 1.20164 1.18388 1.19468 0.97142 0.90737 1.39765 0.90280 1.17287 0.90872 0.90962 0.87880 1.21339 0.98936 0.96815 1.00700 1.20750 0.98425 0.93386 0.99282 1.20303 1.01206 0.96497 1.08153 1.20208 0.95364 0.95642 0.97960 1.19627 1.02176 0.95142 1.08099 1.19928 0.95600 0.86140 0.85743 0.84791 1.86573 1.43471 1.15330 1.89276 1.24929 0.72278 0.79337 0.92632 1.90621 1.53797 1.46419 1.52680 1.84876 1.73727 1.35747 1.34424 0.90774 0.86174 0.89239 0.89264 0.89299 0.77499 0.75205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.11 10.97 55.55 0.61 -18.51 15 2 C 0.08 1.91 5.17 -17.34 -0.09 1.82 15 3 Si 0.91 17.67 29.59 -169.99 -5.03 12.64 15 4 H -0.27 -5.21 7.11 56.52 0.40 -4.80 15 5 H -0.28 -5.31 7.11 56.52 0.40 -4.91 15 6 H -0.26 -5.04 7.11 56.52 0.40 -4.64 15 7 C -0.44 -10.71 7.43 -37.74 -0.28 -10.99 15 8 H 0.08 1.83 6.38 -52.49 -0.33 1.50 15 9 C 0.13 3.29 5.56 -106.82 -0.59 2.70 15 10 C -0.16 -3.92 8.68 -38.87 -0.34 -4.26 15 11 C -0.10 -2.26 10.02 -39.66 -0.40 -2.66 15 12 C -0.24 -5.27 10.05 -39.29 -0.39 -5.67 15 13 C -0.07 -1.60 9.29 -39.66 -0.37 -1.97 15 14 C -0.25 -5.69 5.10 -103.91 -0.53 -6.22 15 15 C 0.19 3.85 3.27 -29.04 -0.09 3.75 15 16 H 0.13 2.72 6.49 -51.93 -0.34 2.38 15 17 O -0.54 -10.46 12.64 -55.14 -0.70 -11.15 15 18 C 0.46 9.53 7.63 36.00 0.27 9.80 15 19 O -0.54 -11.75 17.08 -25.46 -0.43 -12.19 15 20 O -0.48 -9.25 12.38 -39.26 -0.49 -9.74 15 21 H 0.28 6.25 8.30 -40.82 -0.34 5.91 15 22 H 0.12 3.05 6.23 -52.49 -0.33 2.72 15 23 H 0.09 1.80 8.06 -52.49 -0.42 1.38 15 24 H 0.09 1.72 8.06 -52.49 -0.42 1.30 15 25 H 0.09 1.68 6.39 -52.49 -0.34 1.35 15 26 H 0.38 6.41 7.08 45.56 0.32 6.73 15 27 H 0.39 5.57 9.10 45.56 0.41 5.99 15 LS Contribution 242.26 15.07 3.65 3.65 Total: -1.00 -28.32 242.26 -5.78 -34.09 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -0.58 Total: 14.90 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: -2.81 Total: -13.70 kcal Atomic # 7 Polarization: -19.11 SS G_CDS: 0.61 Total: -18.51 kcal Atomic # 8 Polarization: -31.46 SS G_CDS: -1.62 Total: -33.08 kcal Atomic # 14 Polarization: 17.67 SS G_CDS: -5.03 Total: 12.64 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -28.32 -5.78 -34.09 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713754714.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.870 kcal (2) G-P(sol) polarization free energy of solvation -28.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds