Wall clock time and date at job start Mon Mar 30 2020 02:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09000 * 109.47299 * 2 1 4 4 C 1.50699 * 109.47459 * 239.99897 * 2 1 3 5 5 H 1.08002 * 119.99853 * 240.00732 * 4 2 1 6 6 C 1.37874 * 120.00115 * 60.00034 * 4 2 1 7 7 N 1.31515 * 119.99745 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00145 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47469 * 90.00075 * 8 6 4 10 10 H 1.48509 * 109.46860 * 209.99987 * 8 6 4 11 11 H 1.48502 * 109.46905 * 329.99495 * 8 6 4 12 12 C 1.50706 * 109.47171 * 119.99893 * 2 1 3 13 13 O 1.21276 * 119.99859 * 94.99747 * 12 2 1 14 14 C 1.46976 * 119.99889 * 275.00316 * 12 2 1 15 15 C 1.39954 * 120.19770 * 359.97438 * 14 12 2 16 16 C 1.37757 * 119.85104 * 180.02562 * 15 14 12 17 17 C 1.38524 * 120.25242 * 359.97438 * 16 15 14 18 18 C 1.38226 * 120.40107 * 0.02562 * 17 16 15 19 19 C 1.38275 * 120.14204 * 0.26264 * 18 17 16 20 20 F 1.35101 * 120.12846 * 179.74371 * 19 18 17 21 21 H 1.09000 * 109.47299 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47727 * 300.00399 * 1 2 3 23 23 H 1.09004 * 109.46950 * 60.00114 * 1 2 3 24 24 H 0.97002 * 119.99861 * 180.02562 * 7 6 4 25 25 H 1.08002 * 120.07531 * 0.02562 * 15 14 12 26 26 H 1.07999 * 119.87795 * 180.02562 * 16 15 14 27 27 H 1.08001 * 119.80156 * 180.02562 * 17 16 15 28 28 H 1.08002 * 119.92706 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1618 -4.4119 10 1 2.4867 -0.1414 -5.1122 11 1 3.6295 -1.7583 -3.7120 12 6 2.0323 -0.7104 1.2305 13 8 2.3207 -1.8871 1.1761 14 6 2.1726 0.0228 2.4966 15 6 1.8413 1.3809 2.5639 16 6 1.9761 2.0614 3.7541 17 6 2.4375 1.4063 4.8841 18 6 2.7677 0.0652 4.8294 19 6 2.6444 -0.6323 3.6418 20 9 2.9721 -1.9418 3.5874 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 0.7090 1.1613 -3.4844 25 1 1.4809 1.8944 1.6848 26 1 1.7202 3.1093 3.8067 27 1 2.5400 1.9468 5.8136 28 1 3.1271 -0.4378 5.7150 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000033426632.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:42 Heat of formation + Delta-G solvation = -82.472133 kcal Electronic energy + Delta-G solvation = -14675.175860 eV Core-core repulsion = 11990.785861 eV Total energy + Delta-G solvation = -2684.389998 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.080 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.93940 -40.76269 -39.05218 -35.87288 -33.20328 -31.68739 -31.42164 -27.29869 -25.91233 -24.04869 -23.04834 -20.59975 -18.79756 -18.21980 -17.52401 -17.19308 -16.74562 -16.62277 -15.69540 -15.47369 -15.17015 -15.11806 -14.25337 -14.08695 -13.59318 -13.18575 -13.08187 -12.87622 -12.70717 -12.61159 -12.28314 -12.24385 -12.08965 -11.08547 -10.59220 -10.20228 -10.08177 -9.74659 -8.18455 -6.30330 -0.36967 0.22295 1.37787 1.38861 1.49689 1.57739 2.39364 2.71838 3.09405 3.18226 3.30283 3.75157 4.07238 4.27104 4.33962 4.52958 4.68691 4.88278 4.95913 4.99331 5.07410 5.14332 5.30332 5.39545 5.47068 5.66879 5.89031 5.91232 6.18921 6.71834 6.82869 7.37033 8.86883 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.042595 B = 0.008007 C = 0.007146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.196543 B = 3496.071780 C = 3917.336131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.004 3.996 3 H 0.053 0.947 4 C -0.539 4.539 5 H 0.040 0.960 6 C 0.025 3.975 7 N -0.906 5.906 8 Si 0.954 3.046 9 H -0.276 1.276 10 H -0.270 1.270 11 H -0.279 1.279 12 C 0.390 3.610 13 O -0.498 6.498 14 C -0.226 4.226 15 C -0.048 4.048 16 C -0.133 4.133 17 C -0.048 4.048 18 C -0.166 4.166 19 C 0.111 3.889 20 F -0.145 7.145 21 H 0.016 0.984 22 H 0.049 0.951 23 H 0.078 0.922 24 H 0.267 0.733 25 H 0.144 0.856 26 H 0.174 0.826 27 H 0.185 0.815 28 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.873 6.483 14.501 15.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.015 4.015 3 H 0.071 0.929 4 C -0.576 4.576 5 H 0.058 0.942 6 C -0.175 4.175 7 N -0.545 5.545 8 Si 0.779 3.221 9 H -0.202 1.202 10 H -0.195 1.195 11 H -0.204 1.204 12 C 0.271 3.729 13 O -0.377 6.377 14 C -0.228 4.228 15 C -0.067 4.067 16 C -0.151 4.151 17 C -0.065 4.065 18 C -0.185 4.185 19 C 0.092 3.908 20 F -0.124 7.124 21 H 0.035 0.965 22 H 0.068 0.932 23 H 0.096 0.904 24 H 0.076 0.924 25 H 0.161 0.839 26 H 0.191 0.809 27 H 0.202 0.798 28 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 0.954 5.938 14.324 15.535 hybrid contribution 0.350 -1.125 -1.267 1.731 sum 1.304 4.813 13.056 13.976 Atomic orbital electron populations 1.21512 0.94939 0.99182 1.01846 1.19101 0.95255 0.96836 0.90276 0.92902 1.21250 1.32213 1.12560 0.91623 0.94201 1.25554 0.95038 0.95669 1.01253 1.69919 1.36797 1.23260 1.24479 0.85627 0.78580 0.78634 0.79241 1.20184 1.19458 1.20410 1.23453 0.71774 0.87621 0.90098 1.90385 1.40272 1.19607 1.87396 1.21014 1.09439 0.97864 0.94504 1.21708 0.93807 0.90718 1.00421 1.21678 0.99847 1.02308 0.91242 1.21784 0.92279 0.92202 1.00282 1.21489 1.04538 0.96589 0.95864 1.18561 0.98570 0.78173 0.95512 1.91491 1.89765 1.33985 1.97151 0.96520 0.93205 0.90362 0.92363 0.83880 0.80860 0.79803 0.81818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.63 8.95 71.98 0.64 -4.98 15 2 C 0.00 0.21 1.93 -12.29 -0.02 0.19 15 3 H 0.05 2.70 6.74 -2.39 -0.02 2.68 15 4 C -0.54 -31.88 8.33 25.60 0.21 -31.67 15 5 H 0.04 2.52 7.03 -2.91 -0.02 2.50 15 6 C 0.02 1.39 5.30 84.65 0.45 1.84 15 7 N -0.91 -50.70 11.32 21.45 0.24 -50.46 15 8 Si 0.95 45.24 29.54 68.60 2.03 47.26 15 9 H -0.28 -12.88 7.11 99.48 0.71 -12.17 15 10 H -0.27 -12.02 7.11 99.48 0.71 -11.31 15 11 H -0.28 -13.40 7.11 99.48 0.71 -12.69 15 12 C 0.39 19.28 6.22 27.98 0.17 19.46 15 13 O -0.50 -28.19 14.80 -3.02 -0.04 -28.24 15 14 C -0.23 -8.73 5.87 -20.11 -0.12 -8.85 15 15 C -0.05 -1.43 9.36 22.57 0.21 -1.22 15 16 C -0.13 -2.57 10.02 22.22 0.22 -2.35 15 17 C -0.05 -0.79 10.03 22.34 0.22 -0.57 15 18 C -0.17 -3.83 10.01 22.28 0.22 -3.61 15 19 C 0.11 3.90 7.29 22.74 0.17 4.06 15 20 F -0.15 -5.97 15.55 44.97 0.70 -5.27 15 21 H 0.02 0.80 8.14 -2.39 -0.02 0.78 15 22 H 0.05 1.98 8.14 -2.39 -0.02 1.96 15 23 H 0.08 4.03 6.07 -2.38 -0.01 4.01 15 24 H 0.27 14.07 8.31 -92.71 -0.77 13.30 15 25 H 0.14 4.29 6.47 -2.91 -0.02 4.27 15 26 H 0.17 1.98 8.06 -2.91 -0.02 1.96 15 27 H 0.18 1.24 8.06 -2.91 -0.02 1.22 15 28 H 0.16 2.77 8.06 -2.91 -0.02 2.74 15 Total: -1.00 -71.63 250.95 6.48 -65.15 By element: Atomic # 1 Polarization: -1.93 SS G_CDS: 1.17 Total: -0.75 kcal Atomic # 6 Polarization: -30.07 SS G_CDS: 2.39 Total: -27.68 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: 0.24 Total: -50.46 kcal Atomic # 8 Polarization: -28.19 SS G_CDS: -0.04 Total: -28.24 kcal Atomic # 9 Polarization: -5.97 SS G_CDS: 0.70 Total: -5.27 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -71.63 6.48 -65.15 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033426632.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.323 kcal (2) G-P(sol) polarization free energy of solvation -71.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds