Wall clock time and date at job start Mon Mar 30 2020 02:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47430 * 2 1 4 4 C 1.50708 * 109.47053 * 120.00359 * 2 1 3 5 5 H 1.08001 * 119.99667 * 119.99349 * 4 2 1 6 6 C 1.37869 * 119.99723 * 299.99794 * 4 2 1 7 7 N 1.31516 * 120.00362 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99809 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47388 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47041 * 119.99885 * 8 6 4 11 11 H 1.48500 * 109.47386 * 239.99721 * 8 6 4 12 12 C 1.50705 * 109.46806 * 239.99760 * 2 1 3 13 13 O 1.21271 * 120.00127 * 270.00046 * 12 2 1 14 14 C 1.47021 * 119.99728 * 90.00251 * 12 2 1 15 15 C 1.39937 * 120.14552 * 179.97438 * 14 12 2 16 16 C 1.37746 * 119.85313 * 179.97438 * 15 14 12 17 17 C 1.38722 * 120.14346 * 0.26068 * 16 15 14 18 18 F 1.35096 * 119.84969 * 179.73978 * 17 16 15 19 19 C 1.38713 * 120.29215 * 359.48872 * 17 16 15 20 20 C 1.37743 * 120.15029 * 0.50789 * 19 17 16 21 21 H 1.08998 * 109.47115 * 300.00122 * 1 2 3 22 22 H 1.09001 * 109.46969 * 59.99759 * 1 2 3 23 23 H 1.08995 * 109.47430 * 179.97438 * 1 2 3 24 24 H 0.96996 * 120.00145 * 179.97438 * 7 6 4 25 25 H 1.08008 * 120.07148 * 359.96131 * 15 14 12 26 26 H 1.08002 * 119.92474 * 179.97438 * 16 15 14 27 27 H 1.08000 * 119.92734 * 180.25873 * 19 17 16 28 28 H 1.07996 * 120.07782 * 179.72730 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5887 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3213 -1.1206 4.0078 9 1 3.1464 -2.2872 3.6037 10 1 3.1466 -0.1877 4.8164 11 1 1.1660 -1.5868 4.8160 12 6 2.0323 -0.7105 -1.2305 13 8 2.2344 -1.9059 -1.2005 14 6 2.2773 0.0456 -2.4673 15 6 2.7442 -0.6109 -3.6115 16 6 2.9712 0.1034 -4.7673 17 6 2.7432 1.4714 -4.7969 18 9 2.9729 2.1670 -5.9320 19 6 2.2755 2.1274 -3.6677 20 6 2.0443 1.4250 -2.5056 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 0.7090 1.1612 3.4844 25 1 2.9263 -1.6752 -3.5884 26 1 3.3320 -0.4021 -5.6509 27 1 2.0960 3.1919 -3.6986 28 1 1.6844 1.9377 -1.6258 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000033426633.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:44 Heat of formation + Delta-G solvation = -82.545956 kcal Electronic energy + Delta-G solvation = -14381.037685 eV Core-core repulsion = 11696.644485 eV Total energy + Delta-G solvation = -2684.393200 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.99167 -40.92334 -38.91661 -35.85066 -33.04688 -32.06910 -31.34023 -27.27229 -25.76985 -24.08131 -23.19897 -20.55404 -18.89530 -18.33086 -17.54482 -17.23092 -16.66160 -16.58816 -15.75713 -15.38715 -15.23026 -14.71867 -14.29645 -14.15959 -13.75237 -13.53769 -13.14015 -13.00678 -12.68229 -12.60754 -12.24868 -12.13660 -11.97721 -11.03292 -10.56845 -10.20314 -10.17595 -9.77671 -8.15797 -6.27588 -0.43333 0.22977 1.38952 1.41503 1.49105 1.54856 2.41442 2.69374 3.10856 3.14347 3.32348 3.71003 3.89188 4.23034 4.24115 4.56040 4.72083 4.86913 4.94543 4.97932 5.02791 5.04847 5.16962 5.34557 5.52130 5.69909 5.79518 5.95056 6.21874 6.75312 6.86019 7.39969 8.89485 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.051654 B = 0.006628 C = 0.006277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.942132 B = 4223.391692 C = 4459.962836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.002 4.002 3 H 0.052 0.948 4 C -0.533 4.533 5 H 0.043 0.957 6 C 0.023 3.977 7 N -0.907 5.907 8 Si 0.953 3.047 9 H -0.278 1.278 10 H -0.273 1.273 11 H -0.276 1.276 12 C 0.401 3.599 13 O -0.498 6.498 14 C -0.190 4.190 15 C -0.046 4.046 16 C -0.160 4.160 17 C 0.119 3.881 18 F -0.135 7.135 19 C -0.159 4.159 20 C -0.041 4.041 21 H 0.075 0.925 22 H 0.046 0.954 23 H 0.019 0.981 24 H 0.266 0.734 25 H 0.140 0.860 26 H 0.166 0.834 27 H 0.167 0.833 28 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.849 3.849 -12.628 13.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.021 4.021 3 H 0.070 0.930 4 C -0.571 4.571 5 H 0.062 0.938 6 C -0.177 4.177 7 N -0.546 5.546 8 Si 0.778 3.222 9 H -0.203 1.203 10 H -0.198 1.198 11 H -0.202 1.202 12 C 0.281 3.719 13 O -0.376 6.376 14 C -0.191 4.191 15 C -0.065 4.065 16 C -0.178 4.178 17 C 0.100 3.900 18 F -0.114 7.114 19 C -0.178 4.178 20 C -0.059 4.059 21 H 0.093 0.907 22 H 0.065 0.935 23 H 0.038 0.962 24 H 0.075 0.925 25 H 0.158 0.842 26 H 0.184 0.816 27 H 0.185 0.815 28 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.883 3.375 -12.520 13.103 hybrid contribution 0.261 -0.379 0.871 0.985 sum 2.144 2.996 -11.649 12.217 Atomic orbital electron populations 1.21513 0.95188 0.99321 1.01643 1.19173 0.95149 0.97060 0.90745 0.92989 1.21281 1.31967 1.12446 0.91439 0.93827 1.25561 0.95096 0.95675 1.01348 1.69935 1.36945 1.23428 1.24326 0.85585 0.78350 0.78663 0.79562 1.20345 1.19809 1.20173 1.23323 0.71163 0.88047 0.89316 1.90342 1.42266 1.18816 1.86203 1.20878 1.06384 0.95924 0.95902 1.21370 0.93361 1.00926 0.90793 1.21274 1.04117 0.92329 1.00095 1.18099 0.99044 0.90275 0.82603 1.91511 1.91982 1.79174 1.48696 1.21348 1.02633 1.02499 0.91285 1.21574 0.93667 0.92201 0.98501 0.90666 0.93457 0.96168 0.92504 0.84207 0.81613 0.81535 0.83385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.52 8.95 71.98 0.64 -4.87 15 2 C 0.00 -0.12 2.07 -12.28 -0.03 -0.15 15 3 H 0.05 2.53 6.46 -2.39 -0.02 2.51 15 4 C -0.53 -30.16 8.32 25.60 0.21 -29.94 15 5 H 0.04 2.61 7.14 -2.91 -0.02 2.59 15 6 C 0.02 1.25 5.30 84.65 0.45 1.70 15 7 N -0.91 -49.89 11.32 21.44 0.24 -49.64 15 8 Si 0.95 43.95 29.54 68.60 2.03 45.98 15 9 H -0.28 -13.05 7.11 99.48 0.71 -12.35 15 10 H -0.27 -12.04 7.11 99.48 0.71 -11.34 15 11 H -0.28 -12.37 7.11 99.48 0.71 -11.66 15 12 C 0.40 17.98 6.16 27.99 0.17 18.15 15 13 O -0.50 -25.08 15.94 -3.00 -0.05 -25.13 15 14 C -0.19 -6.62 5.87 -20.15 -0.12 -6.74 15 15 C -0.05 -1.36 9.59 22.57 0.22 -1.14 15 16 C -0.16 -3.72 10.01 22.27 0.22 -3.50 15 17 C 0.12 2.79 7.31 22.50 0.16 2.96 15 18 F -0.14 -3.03 17.26 44.97 0.78 -2.25 15 19 C -0.16 -3.76 10.01 22.27 0.22 -3.54 15 20 C -0.04 -1.22 9.36 22.57 0.21 -1.00 15 21 H 0.07 3.79 6.07 -2.39 -0.01 3.78 15 22 H 0.05 1.83 8.14 -2.39 -0.02 1.81 15 23 H 0.02 0.93 8.14 -2.39 -0.02 0.92 15 24 H 0.27 13.79 8.31 -92.71 -0.77 13.02 15 25 H 0.14 4.07 7.65 -2.91 -0.02 4.04 15 26 H 0.17 2.83 8.06 -2.91 -0.02 2.81 15 27 H 0.17 2.95 8.06 -2.91 -0.02 2.93 15 28 H 0.15 4.38 6.35 -2.91 -0.02 4.36 15 Total: -1.00 -62.24 252.72 6.54 -55.70 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: 1.17 Total: 3.42 kcal Atomic # 6 Polarization: -30.44 SS G_CDS: 2.37 Total: -28.07 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: 0.24 Total: -49.64 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.05 Total: -25.13 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.78 Total: -2.25 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -62.24 6.54 -55.70 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033426633.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.849 kcal (2) G-P(sol) polarization free energy of solvation -62.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds