Wall clock time and date at job start Mon Mar 30 2020 02:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 S 1.81400 * 109.47255 * 2 1 4 4 C 1.81400 * 102.99946 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47149 * 54.99613 * 4 3 2 6 6 C 1.50703 * 109.46769 * 294.99857 * 4 3 2 7 7 H 1.07998 * 119.99881 * 334.72879 * 6 4 3 8 8 C 1.37884 * 119.99884 * 154.73363 * 6 4 3 9 9 N 1.31512 * 119.99483 * 184.87064 * 8 6 4 10 10 Si 1.86799 * 120.00067 * 4.86622 * 8 6 4 11 11 H 1.48502 * 109.47107 * 84.68074 * 10 8 6 12 12 H 1.48497 * 109.46883 * 204.68306 * 10 8 6 13 13 H 1.48501 * 109.47033 * 324.68203 * 10 8 6 14 14 C 1.50699 * 109.47379 * 174.99867 * 4 3 2 15 15 C 1.38237 * 119.99867 * 55.07941 * 14 4 3 16 16 C 1.38234 * 119.99857 * 179.79182 * 15 14 4 17 17 C 1.38237 * 119.99992 * 0.43934 * 16 15 14 18 18 C 1.38233 * 120.00039 * 359.81231 * 17 16 15 19 19 C 1.38230 * 120.00093 * 235.35271 * 14 4 3 20 20 H 1.09007 * 109.46755 * 59.99641 * 1 2 3 21 21 H 1.09003 * 109.46763 * 300.00903 * 1 2 3 22 22 H 1.08997 * 109.47230 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.46592 * 119.99843 * 2 1 3 24 24 H 1.08994 * 109.47206 * 239.99527 * 2 1 3 25 25 H 0.97003 * 119.99953 * 179.97438 * 9 8 6 26 26 H 1.08000 * 119.99914 * 359.97438 * 15 14 4 27 27 H 1.07994 * 119.99979 * 180.26865 * 16 15 14 28 28 H 1.08000 * 120.00090 * 179.83632 * 17 16 15 29 29 H 1.07997 * 120.00503 * 180.02562 * 18 17 16 30 30 H 1.08000 * 119.99908 * 359.97438 * 19 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9372 1.5057 -0.0008 5 1 4.2314 0.8792 -0.8428 6 6 4.3691 0.8523 1.2867 7 1 3.7590 0.9492 2.1726 8 6 5.5432 0.1308 1.3336 9 7 5.8724 -0.5187 2.4287 10 14 6.6659 0.0759 -0.1583 11 1 7.5552 1.2652 -0.1526 12 1 7.4899 -1.1586 -0.1124 13 1 5.8451 0.0775 -1.3958 14 6 4.5959 2.8555 -0.1247 15 6 4.2917 3.8584 0.7767 16 6 4.8991 5.0951 0.6656 17 6 5.8039 5.3318 -0.3524 18 6 6.1042 4.3306 -1.2569 19 6 5.5000 3.0924 -1.1432 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 0.5140 0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 1.8933 -0.5138 0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 6.6982 -1.0266 2.4617 26 1 3.5817 3.6747 1.5695 27 1 4.6648 5.8773 1.3724 28 1 6.2766 6.2989 -0.4408 29 1 6.8114 4.5153 -2.0520 30 1 5.7346 2.3101 -1.8498 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039254454.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:08 Heat of formation + Delta-G solvation = 9.896888 kcal Electronic energy + Delta-G solvation = -12846.464549 eV Core-core repulsion = 10732.293148 eV Total energy + Delta-G solvation = -2114.171401 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.077 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.55379 -33.71115 -32.19753 -31.50299 -30.24992 -27.65393 -23.17643 -22.85651 -21.96392 -20.34538 -17.09619 -16.18719 -15.32780 -14.89240 -14.40268 -14.35086 -14.06909 -13.27473 -12.85316 -12.80311 -12.34327 -12.22094 -11.75765 -11.63164 -11.03073 -10.87300 -10.65410 -10.60981 -10.39330 -10.02256 -9.60664 -8.96117 -8.74944 -8.24361 -7.87048 -6.69989 -6.29129 -4.30698 1.95360 2.06616 2.85035 3.16617 3.23134 3.26481 3.64151 4.23124 4.57489 5.01986 5.48352 5.51452 5.52255 5.58678 5.65165 5.84312 5.86798 6.18651 6.20680 6.21920 6.35489 6.41702 6.57939 6.64625 6.75417 7.08183 7.15110 7.27605 7.45268 7.69163 8.21292 8.76089 9.27832 10.80615 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.019518 B = 0.014198 C = 0.009724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.208516 B = 1971.693103 C = 2878.666760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.076 4.076 3 S -0.305 6.305 4 C 0.094 3.906 5 H 0.059 0.941 6 C -0.506 4.506 7 H 0.089 0.911 8 C 0.084 3.916 9 N -0.882 5.882 10 Si 0.863 3.137 11 H -0.263 1.263 12 H -0.287 1.287 13 H -0.262 1.262 14 C -0.028 4.028 15 C -0.093 4.093 16 C -0.125 4.125 17 C -0.143 4.143 18 C -0.123 4.123 19 C -0.134 4.134 20 H 0.055 0.945 21 H 0.059 0.941 22 H 0.060 0.940 23 H 0.088 0.912 24 H 0.067 0.933 25 H 0.268 0.732 26 H 0.125 0.875 27 H 0.114 0.886 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.306 5.106 -6.114 8.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.225 4.225 3 S -0.074 6.074 4 C -0.034 4.034 5 H 0.077 0.923 6 C -0.545 4.545 7 H 0.107 0.893 8 C -0.122 4.122 9 N -0.518 5.518 10 Si 0.690 3.310 11 H -0.188 1.188 12 H -0.213 1.213 13 H -0.187 1.187 14 C -0.031 4.031 15 C -0.112 4.112 16 C -0.143 4.143 17 C -0.162 4.162 18 C -0.141 4.141 19 C -0.154 4.154 20 H 0.074 0.926 21 H 0.079 0.921 22 H 0.079 0.921 23 H 0.107 0.893 24 H 0.086 0.914 25 H 0.079 0.921 26 H 0.143 0.857 27 H 0.132 0.868 28 H 0.129 0.871 29 H 0.130 0.870 30 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.831 5.879 -6.026 9.249 hybrid contribution 1.653 -1.255 -0.619 2.166 sum -2.178 4.624 -6.645 8.383 Atomic orbital electron populations 1.21506 0.93776 1.01393 1.02314 1.23031 0.97939 0.96467 1.05052 1.86028 1.10591 1.12762 1.98035 1.20184 0.88529 0.93144 1.01502 0.92303 1.21059 1.08057 1.30455 0.94976 0.89285 1.25006 0.97239 0.94029 0.95921 1.69868 1.24223 1.30392 1.27288 0.87106 0.81772 0.78312 0.83782 1.18827 1.21285 1.18745 1.20097 0.95297 0.94934 0.92773 1.20994 0.99434 0.92184 0.98588 1.21061 0.97708 0.97208 0.98296 1.20900 0.99966 0.98693 0.96641 1.20923 1.00156 0.93650 0.99415 1.20983 0.98906 0.96918 0.98583 0.92557 0.92147 0.92108 0.89308 0.91379 0.92144 0.85695 0.86837 0.87100 0.87035 0.87199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 9.92 37.16 0.37 -1.56 16 2 C -0.08 -1.42 6.45 37.16 0.24 -1.18 16 3 S -0.30 -6.42 20.49 -107.50 -2.20 -8.63 16 4 C 0.09 2.22 2.03 -29.03 -0.06 2.16 16 5 H 0.06 1.41 5.45 -51.92 -0.28 1.13 16 6 C -0.51 -13.61 8.27 -34.44 -0.28 -13.89 16 7 H 0.09 2.62 8.05 -52.49 -0.42 2.20 16 8 C 0.08 2.34 5.47 -17.82 -0.10 2.24 16 9 N -0.88 -25.83 13.96 55.43 0.77 -25.06 16 10 Si 0.86 20.82 24.75 -169.99 -4.21 16.61 16 11 H -0.26 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.26 -5.99 5.94 56.52 0.34 -5.65 16 14 C -0.03 -0.63 4.30 -104.63 -0.45 -1.08 16 15 C -0.09 -1.94 8.91 -39.58 -0.35 -2.29 16 16 C -0.12 -2.23 10.05 -39.58 -0.40 -2.63 16 17 C -0.14 -2.42 10.05 -39.58 -0.40 -2.81 16 18 C -0.12 -2.20 10.05 -39.58 -0.40 -2.59 16 19 C -0.13 -2.76 8.15 -39.58 -0.32 -3.08 16 20 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 21 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 22 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.09 1.80 8.00 -51.93 -0.42 1.38 16 24 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 26 H 0.13 2.65 7.89 -52.49 -0.41 2.23 16 27 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 28 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 29 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 30 H 0.11 2.18 6.74 -52.49 -0.35 1.83 16 LS Contribution 264.15 15.07 3.98 3.98 Total: -1.00 -28.64 264.15 -7.86 -36.49 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -4.05 Total: 3.32 kcal Atomic # 6 Polarization: -24.57 SS G_CDS: -2.15 Total: -26.72 kcal Atomic # 7 Polarization: -25.83 SS G_CDS: 0.77 Total: -25.06 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.21 Total: 16.61 kcal Atomic # 16 Polarization: -6.42 SS G_CDS: -2.20 Total: -8.63 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -28.64 -7.86 -36.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039254454.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.391 kcal (2) G-P(sol) polarization free energy of solvation -28.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds