Wall clock time and date at job start Mon Mar 30 2020 02:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 S 1.81400 * 109.47255 * 2 1 4 4 C 1.81400 * 102.99946 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47149 * 54.99613 * 4 3 2 6 6 C 1.50703 * 109.46769 * 294.99857 * 4 3 2 7 7 H 1.07998 * 119.99881 * 334.72879 * 6 4 3 8 8 C 1.37884 * 119.99884 * 154.73363 * 6 4 3 9 9 N 1.31512 * 119.99483 * 184.87064 * 8 6 4 10 10 Si 1.86799 * 120.00067 * 4.86622 * 8 6 4 11 11 H 1.48502 * 109.47107 * 84.68074 * 10 8 6 12 12 H 1.48497 * 109.46883 * 204.68306 * 10 8 6 13 13 H 1.48501 * 109.47033 * 324.68203 * 10 8 6 14 14 C 1.50699 * 109.47379 * 174.99867 * 4 3 2 15 15 C 1.38237 * 119.99867 * 55.07941 * 14 4 3 16 16 C 1.38234 * 119.99857 * 179.79182 * 15 14 4 17 17 C 1.38237 * 119.99992 * 0.43934 * 16 15 14 18 18 C 1.38233 * 120.00039 * 359.81231 * 17 16 15 19 19 C 1.38230 * 120.00093 * 235.35271 * 14 4 3 20 20 H 1.09007 * 109.46755 * 59.99641 * 1 2 3 21 21 H 1.09003 * 109.46763 * 300.00903 * 1 2 3 22 22 H 1.08997 * 109.47230 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.46592 * 119.99843 * 2 1 3 24 24 H 1.08994 * 109.47206 * 239.99527 * 2 1 3 25 25 H 0.97003 * 119.99953 * 179.97438 * 9 8 6 26 26 H 1.08000 * 119.99914 * 359.97438 * 15 14 4 27 27 H 1.07994 * 119.99979 * 180.26865 * 16 15 14 28 28 H 1.08000 * 120.00090 * 179.83632 * 17 16 15 29 29 H 1.07997 * 120.00503 * 180.02562 * 18 17 16 30 30 H 1.08000 * 119.99908 * 359.97438 * 19 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9372 1.5057 -0.0008 5 1 4.2314 0.8792 -0.8428 6 6 4.3691 0.8523 1.2867 7 1 3.7590 0.9492 2.1726 8 6 5.5432 0.1308 1.3336 9 7 5.8724 -0.5187 2.4287 10 14 6.6659 0.0759 -0.1583 11 1 7.5552 1.2652 -0.1526 12 1 7.4899 -1.1586 -0.1124 13 1 5.8451 0.0775 -1.3958 14 6 4.5959 2.8555 -0.1247 15 6 4.2917 3.8584 0.7767 16 6 4.8991 5.0951 0.6656 17 6 5.8039 5.3318 -0.3524 18 6 6.1042 4.3306 -1.2569 19 6 5.5000 3.0924 -1.1432 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 0.5140 0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 1.8933 -0.5138 0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 6.6982 -1.0266 2.4617 26 1 3.5817 3.6747 1.5695 27 1 4.6648 5.8773 1.3724 28 1 6.2766 6.2989 -0.4408 29 1 6.8114 4.5153 -2.0520 30 1 5.7346 2.3101 -1.8498 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039254454.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:08 Heat of formation + Delta-G solvation = -5.758543 kcal Electronic energy + Delta-G solvation = -12847.143419 eV Core-core repulsion = 10732.293148 eV Total energy + Delta-G solvation = -2114.850271 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.077 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.04610 -35.61623 -33.57516 -33.34079 -31.70596 -29.41079 -25.05340 -24.25891 -23.43827 -21.93211 -19.12723 -17.67302 -17.10399 -16.56334 -16.05949 -15.86029 -15.50795 -14.98595 -14.51500 -14.32299 -13.99961 -13.80320 -13.41333 -13.10145 -12.79314 -12.38248 -12.18653 -12.13999 -12.05371 -11.70775 -11.52892 -10.86941 -10.65702 -9.71351 -9.40958 -8.47961 -8.35805 -6.46678 0.44515 0.58975 1.23974 1.25162 1.29637 1.34631 1.93251 2.22606 2.94531 3.07942 4.05024 4.11223 4.12382 4.22374 4.26419 4.35125 4.51423 4.62301 4.75817 4.85122 4.91705 5.01379 5.12577 5.24669 5.25906 5.32160 5.64657 5.68973 5.86863 6.10264 6.23390 6.56151 7.14929 8.72495 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.019518 B = 0.014198 C = 0.009724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.208516 B = 1971.693103 C = 2878.666760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.075 4.075 3 S -0.308 6.308 4 C 0.096 3.904 5 H 0.052 0.948 6 C -0.502 4.502 7 H 0.045 0.955 8 C 0.032 3.968 9 N -0.931 5.931 10 Si 0.920 3.080 11 H -0.257 1.257 12 H -0.285 1.285 13 H -0.243 1.243 14 C -0.058 4.058 15 C -0.117 4.117 16 C -0.123 4.123 17 C -0.133 4.133 18 C -0.121 4.121 19 C -0.152 4.152 20 H 0.068 0.932 21 H 0.057 0.943 22 H 0.088 0.912 23 H 0.062 0.938 24 H 0.075 0.925 25 H 0.270 0.730 26 H 0.106 0.894 27 H 0.143 0.857 28 H 0.154 0.846 29 H 0.148 0.852 30 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.843 6.817 -8.224 11.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.223 4.223 3 S -0.077 6.077 4 C -0.032 4.032 5 H 0.071 0.929 6 C -0.542 4.542 7 H 0.064 0.936 8 C -0.169 4.169 9 N -0.570 5.570 10 Si 0.744 3.256 11 H -0.182 1.182 12 H -0.212 1.212 13 H -0.168 1.168 14 C -0.060 4.060 15 C -0.136 4.136 16 C -0.141 4.141 17 C -0.151 4.151 18 C -0.139 4.139 19 C -0.172 4.172 20 H 0.087 0.913 21 H 0.076 0.924 22 H 0.107 0.893 23 H 0.081 0.919 24 H 0.094 0.906 25 H 0.079 0.921 26 H 0.124 0.876 27 H 0.161 0.839 28 H 0.172 0.828 29 H 0.166 0.834 30 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.382 7.603 -8.146 11.645 hybrid contribution 1.406 -1.691 0.069 2.200 sum -1.976 5.912 -8.077 10.203 Atomic orbital electron populations 1.21491 0.90450 1.03386 1.02800 1.23172 1.00722 0.94331 1.04123 1.85950 1.08738 1.15130 1.97922 1.20058 0.90109 0.94121 0.98948 0.92943 1.21041 1.07367 1.30671 0.95096 0.93631 1.25743 0.98701 0.93831 0.98656 1.70000 1.25113 1.32227 1.29627 0.86199 0.79980 0.78323 0.81112 1.18185 1.21158 1.16757 1.20018 0.96758 0.94504 0.94728 1.21010 1.00431 0.93736 0.98451 1.21423 0.97083 0.96469 0.99137 1.21413 0.98481 1.00193 0.94980 1.21380 0.99779 0.92470 1.00234 1.21171 0.99072 0.98551 0.98421 0.91306 0.92365 0.89302 0.91883 0.90605 0.92107 0.87623 0.83917 0.82800 0.83408 0.86975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.43 9.92 71.98 0.71 -2.71 16 2 C -0.08 -2.79 6.45 71.98 0.46 -2.32 16 3 S -0.31 -13.14 20.49 -56.49 -1.16 -14.30 16 4 C 0.10 4.58 2.03 29.10 0.06 4.64 16 5 H 0.05 2.53 5.45 -2.39 -0.01 2.51 16 6 C -0.50 -28.19 8.27 25.60 0.21 -27.98 16 7 H 0.05 2.88 8.05 -2.91 -0.02 2.85 16 8 C 0.03 1.83 5.47 84.66 0.46 2.29 16 9 N -0.93 -56.76 13.96 21.45 0.30 -56.46 16 10 Si 0.92 43.22 24.75 68.60 1.70 44.91 16 11 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 12 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 13 H -0.24 -10.56 5.94 99.48 0.59 -9.97 16 14 C -0.06 -2.55 4.30 -19.87 -0.09 -2.63 16 15 C -0.12 -4.86 8.91 22.27 0.20 -4.66 16 16 C -0.12 -4.09 10.05 22.27 0.22 -3.86 16 17 C -0.13 -3.87 10.05 22.27 0.22 -3.64 16 18 C -0.12 -3.81 10.05 22.27 0.22 -3.59 16 19 C -0.15 -5.94 8.15 22.27 0.18 -5.76 16 20 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 21 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 22 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 23 H 0.06 2.65 8.00 -2.39 -0.02 2.63 16 24 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 25 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 26 H 0.11 4.66 7.89 -2.91 -0.02 4.64 16 27 H 0.14 3.80 8.06 -2.91 -0.02 3.78 16 28 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 29 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 30 H 0.11 4.21 6.74 -2.91 -0.02 4.19 16 Total: -1.00 -64.35 264.15 4.70 -59.65 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: 0.99 Total: 16.44 kcal Atomic # 6 Polarization: -53.11 SS G_CDS: 2.88 Total: -50.23 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: 0.30 Total: -56.46 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 1.70 Total: 44.91 kcal Atomic # 16 Polarization: -13.14 SS G_CDS: -1.16 Total: -14.30 kcal Total: -64.35 4.70 -59.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039254454.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.889 kcal (2) G-P(sol) polarization free energy of solvation -64.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds