Wall clock time and date at job start Mon Mar 30 2020 02:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47175 * 2 1 4 4 C 1.50700 * 109.47495 * 120.00158 * 2 1 3 5 5 H 1.08001 * 119.99714 * 116.54562 * 4 2 1 6 6 C 1.37879 * 120.00049 * 296.55281 * 4 2 1 7 7 N 1.31512 * 119.99839 * 352.32964 * 6 4 2 8 8 Si 1.86800 * 120.00065 * 172.60612 * 6 4 2 9 9 H 1.48491 * 109.47269 * 264.78692 * 8 6 4 10 10 H 1.48506 * 109.46940 * 24.78922 * 8 6 4 11 11 H 1.48497 * 109.46947 * 144.78195 * 8 6 4 12 12 S 1.81400 * 109.47017 * 240.00510 * 2 1 3 13 13 C 1.81397 * 103.00405 * 64.99875 * 12 2 1 14 14 C 1.50694 * 109.47324 * 180.02562 * 13 12 2 15 15 C 1.38234 * 119.99908 * 269.72462 * 14 13 12 16 16 C 1.38238 * 119.99926 * 179.76748 * 15 14 13 17 17 C 1.38229 * 120.00033 * 0.50727 * 16 15 14 18 18 C 1.38234 * 119.99965 * 359.74390 * 17 16 15 19 19 C 1.38238 * 120.00292 * 0.02562 * 18 17 16 20 20 H 1.08997 * 109.46928 * 175.95270 * 1 2 3 21 21 H 1.09003 * 109.47040 * 295.95123 * 1 2 3 22 22 H 1.09003 * 109.47427 * 55.95305 * 1 2 3 23 23 H 0.97000 * 120.00199 * 180.28055 * 7 6 4 24 24 H 1.09003 * 109.46763 * 300.00303 * 13 12 2 25 25 H 1.09000 * 109.47346 * 59.99551 * 13 12 2 26 26 H 1.08005 * 120.00241 * 359.97438 * 15 14 13 27 27 H 1.07998 * 119.99695 * 180.23250 * 16 15 14 28 28 H 1.08006 * 120.00100 * 179.72673 * 17 16 15 29 29 H 1.08000 * 120.00115 * 179.97438 * 18 17 16 30 30 H 1.07994 * 120.00120 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6065 -1.6199 1.1322 6 6 1.7590 -0.1994 2.4815 7 7 1.1931 0.9818 2.6000 8 14 2.1995 -1.1814 4.0082 9 1 1.0142 -1.9540 4.4590 10 1 3.3090 -2.1166 3.6922 11 1 2.6258 -0.2544 5.0871 12 16 2.1346 -0.8550 -1.4812 13 6 1.5664 0.2154 -2.8309 14 6 1.9973 -0.3693 -4.1513 15 6 3.2156 -0.0145 -4.6997 16 6 3.6130 -0.5546 -5.9085 17 6 2.7875 -1.4415 -6.5740 18 6 1.5670 -1.7923 -6.0281 19 6 1.1716 -1.2559 -4.8170 20 1 -0.3633 -1.0251 -0.0725 21 1 -0.3633 0.4497 0.9241 22 1 -0.3634 0.5754 -0.8515 23 1 1.0044 1.3431 3.4802 24 1 0.4792 0.2883 -2.8037 25 1 2.0000 1.2086 -2.7142 26 1 3.8584 0.6822 -4.1821 27 1 4.5664 -0.2802 -6.3351 28 1 3.0961 -1.8601 -7.5206 29 1 0.9218 -2.4849 -6.5483 30 1 0.2178 -1.5297 -4.3907 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048247607.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:47 Heat of formation + Delta-G solvation = -8.851048 kcal Electronic energy + Delta-G solvation = -12245.954743 eV Core-core repulsion = 10130.970370 eV Total energy + Delta-G solvation = -2114.984372 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.077 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.04179 -36.02977 -33.74699 -32.43546 -31.75822 -28.07655 -27.17866 -23.46478 -23.35848 -22.25152 -18.59776 -17.71082 -17.12738 -16.34905 -16.17075 -16.04017 -15.28303 -14.89240 -14.31677 -14.12066 -13.88207 -13.74179 -13.52044 -12.99778 -12.83433 -12.48728 -12.38131 -12.12514 -11.88761 -11.84666 -11.27236 -10.72582 -10.40295 -9.79771 -9.54498 -8.44483 -8.25777 -6.38333 0.21024 0.53269 1.30760 1.40322 1.41900 1.53839 2.06994 2.38894 2.99251 3.05069 3.76226 3.86463 4.18694 4.28185 4.32078 4.51968 4.63195 4.69055 4.76480 4.82489 4.83973 5.09953 5.18908 5.32873 5.57054 5.58468 5.63265 5.69563 5.71605 6.03282 6.13642 6.64290 7.27703 8.82377 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.061763 B = 0.005726 C = 0.005616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.238082 B = 4888.605010 C = 4984.192040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.104 3.896 3 H 0.016 0.984 4 C -0.529 4.529 5 H 0.053 0.947 6 C 0.026 3.974 7 N -0.913 5.913 8 Si 0.966 3.034 9 H -0.270 1.270 10 H -0.271 1.271 11 H -0.277 1.277 12 S -0.319 6.319 13 C -0.037 4.037 14 C -0.080 4.080 15 C -0.121 4.121 16 C -0.124 4.124 17 C -0.121 4.121 18 C -0.123 4.123 19 C -0.119 4.119 20 H 0.042 0.958 21 H 0.056 0.944 22 H 0.036 0.964 23 H 0.268 0.732 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.121 0.879 27 H 0.146 0.854 28 H 0.152 0.848 29 H 0.147 0.853 30 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.698 -2.597 -15.479 15.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.024 4.024 3 H 0.035 0.965 4 C -0.568 4.568 5 H 0.071 0.929 6 C -0.176 4.176 7 N -0.551 5.551 8 Si 0.790 3.210 9 H -0.195 1.195 10 H -0.196 1.196 11 H -0.202 1.202 12 S -0.088 6.088 13 C -0.184 4.184 14 C -0.082 4.082 15 C -0.141 4.141 16 C -0.142 4.142 17 C -0.140 4.140 18 C -0.141 4.141 19 C -0.139 4.139 20 H 0.062 0.938 21 H 0.075 0.925 22 H 0.055 0.945 23 H 0.077 0.923 24 H 0.105 0.895 25 H 0.098 0.902 26 H 0.139 0.861 27 H 0.164 0.836 28 H 0.169 0.831 29 H 0.165 0.835 30 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.213 -3.392 -15.370 15.786 hybrid contribution -0.551 1.004 1.312 1.742 sum 0.662 -2.388 -14.058 14.274 Atomic orbital electron populations 1.21818 0.96062 0.99835 1.00231 1.20604 0.95523 0.95592 0.90646 0.96548 1.20900 1.35503 1.10013 0.90350 0.92896 1.25690 0.94676 0.95625 1.01589 1.70038 1.43174 1.16989 1.24913 0.85427 0.78735 0.78516 0.78340 1.19544 1.19560 1.20222 1.86720 1.77376 1.41309 1.03373 1.22190 1.03455 0.99847 0.92916 1.19383 0.96153 0.98910 0.93720 1.21228 0.95370 1.00719 0.96749 1.21432 1.00757 0.97365 0.94604 1.21543 0.94099 0.97486 1.00860 1.21444 0.97475 0.99983 0.95208 1.21227 1.00027 0.96621 0.95976 0.93847 0.92543 0.94475 0.92286 0.89502 0.90156 0.86080 0.83635 0.83078 0.83516 0.85796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.75 8.91 71.98 0.64 -5.11 16 2 C 0.10 5.45 2.65 29.85 0.08 5.53 16 3 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 4 C -0.53 -30.09 8.53 25.60 0.22 -29.87 16 5 H 0.05 3.08 7.73 -2.91 -0.02 3.06 16 6 C 0.03 1.42 5.19 84.66 0.44 1.86 16 7 N -0.91 -52.15 11.93 21.45 0.26 -51.90 16 8 Si 0.97 43.72 29.54 68.60 2.03 45.74 16 9 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 12 S -0.32 -14.37 21.05 -56.49 -1.19 -15.56 16 13 C -0.04 -1.31 5.78 71.23 0.41 -0.90 16 14 C -0.08 -2.48 5.14 -19.87 -0.10 -2.58 16 15 C -0.12 -3.35 9.70 22.27 0.22 -3.14 16 16 C -0.12 -2.73 10.05 22.27 0.22 -2.50 16 17 C -0.12 -2.39 10.05 22.27 0.22 -2.17 16 18 C -0.12 -2.67 10.05 22.27 0.22 -2.45 16 19 C -0.12 -3.23 9.70 22.27 0.22 -3.01 16 20 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 21 H 0.06 2.96 6.57 -2.39 -0.02 2.94 16 22 H 0.04 1.55 7.10 -2.39 -0.02 1.53 16 23 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 24 H 0.09 2.95 7.20 -2.39 -0.02 2.93 16 25 H 0.08 2.81 8.08 -2.39 -0.02 2.79 16 26 H 0.12 3.28 8.06 -2.91 -0.02 3.26 16 27 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 28 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 29 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 30 H 0.12 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -62.18 271.15 4.99 -57.19 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: 1.10 Total: 8.87 kcal Atomic # 6 Polarization: -47.14 SS G_CDS: 2.79 Total: -44.35 kcal Atomic # 7 Polarization: -52.15 SS G_CDS: 0.26 Total: -51.90 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: -14.37 SS G_CDS: -1.19 Total: -15.56 kcal Total: -62.18 4.99 -57.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048247607.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.340 kcal (2) G-P(sol) polarization free energy of solvation -62.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds