Wall clock time and date at job start Mon Mar 30 2020 02:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47209 * 89.99886 * 8 6 4 10 10 H 1.48501 * 109.47358 * 209.99377 * 8 6 4 11 11 H 1.48496 * 109.47341 * 329.99989 * 8 6 4 12 12 S 1.81402 * 109.46679 * 119.99649 * 2 1 3 13 13 C 1.81406 * 103.00061 * 294.99973 * 12 2 1 14 14 C 1.50698 * 109.47079 * 180.02562 * 13 12 2 15 15 C 1.38237 * 119.99732 * 269.72843 * 14 13 12 16 16 C 1.38233 * 119.99568 * 179.76845 * 15 14 13 17 17 C 1.38231 * 120.00390 * 0.50583 * 16 15 14 18 18 C 1.38240 * 119.99943 * 359.74089 * 17 16 15 19 19 C 1.38234 * 119.99903 * 0.02562 * 18 17 16 20 20 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 22 22 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 23 23 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 24 24 H 1.09007 * 109.46893 * 300.00003 * 13 12 2 25 25 H 1.08993 * 109.46956 * 59.99992 * 13 12 2 26 26 H 1.07997 * 120.00144 * 359.97438 * 15 14 13 27 27 H 1.08007 * 120.00024 * 180.22522 * 16 15 14 28 28 H 1.08004 * 120.00431 * 179.73014 * 17 16 15 29 29 H 1.07994 * 120.00008 * 179.97438 * 18 17 16 30 30 H 1.07997 * 120.00096 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 1.3570 -2.1535 -4.4186 10 1 2.5020 -0.1303 -5.1087 11 1 3.6403 -1.7503 -3.7084 12 16 2.1346 -0.8551 1.4812 13 6 1.5663 0.2155 2.8310 14 6 1.9982 -0.3687 4.1513 15 6 1.1710 -1.2515 4.8201 16 6 1.5693 -1.7910 6.0288 17 6 2.7901 -1.4397 6.5739 18 6 3.6150 -0.5529 5.9076 19 6 3.2189 -0.0171 4.6964 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 0.7173 1.1669 -3.4844 24 1 2.0001 1.2087 2.7141 25 1 0.4791 0.2883 2.8037 26 1 0.2152 -1.5223 4.3966 27 1 0.9247 -2.4837 6.5497 28 1 3.0993 -1.8579 7.5205 29 1 4.5686 -0.2781 6.3336 30 1 3.8632 0.6761 4.1760 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048247610.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:48 Heat of formation + Delta-G solvation = 6.112602 kcal Electronic energy + Delta-G solvation = -12251.232975 eV Core-core repulsion = 10136.897475 eV Total energy + Delta-G solvation = -2114.335500 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.077 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.00526 -34.00541 -32.58178 -30.75132 -30.32027 -26.75142 -25.20938 -22.41916 -21.49868 -20.98663 -16.85903 -16.28631 -15.37853 -15.03393 -14.92365 -14.58278 -13.54972 -13.30147 -13.16182 -12.63819 -12.52892 -12.26242 -11.82440 -11.11697 -11.00812 -10.92076 -10.80308 -10.57711 -10.45260 -10.07307 -9.32280 -8.78274 -8.75117 -8.43937 -8.35629 -6.65215 -6.14322 -4.22392 1.37139 1.54826 2.82936 3.26329 3.32362 3.37989 3.88123 4.05534 4.36150 4.95688 4.98200 5.10808 5.17332 5.25911 5.48811 5.65066 5.79162 5.93261 6.17324 6.19471 6.58378 6.61786 6.62756 6.80317 6.81459 6.87300 7.13495 7.40805 7.66495 7.85774 8.11421 8.77449 9.41029 10.91548 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.061616 B = 0.005748 C = 0.005596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.316886 B = 4870.166969 C = 5002.699020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.110 3.890 3 H 0.042 0.958 4 C -0.503 4.503 5 H 0.065 0.935 6 C 0.068 3.932 7 N -0.890 5.890 8 Si 0.905 3.095 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.272 1.272 12 S -0.298 6.298 13 C -0.054 4.054 14 C -0.053 4.053 15 C -0.106 4.106 16 C -0.122 4.122 17 C -0.129 4.129 18 C -0.122 4.122 19 C -0.106 4.106 20 H 0.039 0.961 21 H 0.009 0.991 22 H 0.092 0.908 23 H 0.264 0.736 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.122 0.878 27 H 0.119 0.881 28 H 0.117 0.883 29 H 0.119 0.881 30 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.961 -1.320 13.744 13.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.018 4.018 3 H 0.060 0.940 4 C -0.543 4.543 5 H 0.084 0.916 6 C -0.136 4.136 7 N -0.528 5.528 8 Si 0.732 3.268 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.196 1.196 12 S -0.068 6.068 13 C -0.202 4.202 14 C -0.054 4.054 15 C -0.126 4.126 16 C -0.140 4.140 17 C -0.148 4.148 18 C -0.140 4.140 19 C -0.126 4.126 20 H 0.059 0.941 21 H 0.028 0.972 22 H 0.110 0.890 23 H 0.074 0.926 24 H 0.098 0.902 25 H 0.100 0.900 26 H 0.140 0.860 27 H 0.137 0.863 28 H 0.135 0.865 29 H 0.137 0.863 30 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.461 -2.128 13.633 13.875 hybrid contribution -0.414 0.729 -0.958 1.274 sum 1.047 -1.399 12.675 12.795 Atomic orbital electron populations 1.22046 0.96932 1.00313 1.00446 1.20813 0.95011 0.96758 0.89191 0.94001 1.20679 1.32018 1.12835 0.88721 0.91638 1.24905 0.94848 0.94977 0.98841 1.69871 1.36400 1.22662 1.23904 0.86375 0.79435 0.79237 0.81751 1.20419 1.21029 1.19636 1.86831 1.76749 1.40286 1.02947 1.22210 1.03394 1.00857 0.93724 1.19451 0.94687 0.97008 0.94278 1.21061 0.99938 0.96621 0.94972 1.21081 0.96742 1.00117 0.96059 1.21084 0.94909 0.98753 1.00008 1.21083 0.99571 0.97861 0.95479 1.21067 0.95718 1.00227 0.95588 0.94146 0.97157 0.88991 0.92599 0.90187 0.89959 0.85953 0.86275 0.86473 0.86271 0.85932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 8.88 37.16 0.33 -2.98 16 2 C 0.11 2.80 2.76 -27.88 -0.08 2.72 16 3 H 0.04 1.14 8.14 -51.92 -0.42 0.72 16 4 C -0.50 -14.00 8.58 -34.44 -0.30 -14.30 16 5 H 0.07 1.86 7.71 -52.49 -0.40 1.45 16 6 C 0.07 1.85 5.31 -17.82 -0.09 1.75 16 7 N -0.89 -24.90 11.33 55.43 0.63 -24.27 16 8 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 12 S -0.30 -6.66 21.05 -107.50 -2.26 -8.92 16 13 C -0.05 -0.97 5.77 36.00 0.21 -0.76 16 14 C -0.05 -0.84 5.14 -104.62 -0.54 -1.38 16 15 C -0.11 -1.54 9.70 -39.58 -0.38 -1.92 16 16 C -0.12 -1.52 10.05 -39.59 -0.40 -1.92 16 17 C -0.13 -1.52 10.05 -39.58 -0.40 -1.92 16 18 C -0.12 -1.52 10.05 -39.58 -0.40 -1.92 16 19 C -0.11 -1.54 9.70 -39.58 -0.38 -1.93 16 20 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 21 H 0.01 0.20 6.92 -51.93 -0.36 -0.15 16 22 H 0.09 2.40 6.08 -51.93 -0.32 2.09 16 23 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 24 H 0.08 1.38 8.09 -51.92 -0.42 0.96 16 25 H 0.08 1.42 7.09 -51.93 -0.37 1.05 16 26 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 27 H 0.12 1.19 8.06 -52.48 -0.42 0.76 16 28 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 29 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 30 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 269.97 15.07 4.07 4.07 Total: -1.00 -28.66 269.97 -8.98 -37.64 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -3.96 Total: -0.17 kcal Atomic # 6 Polarization: -22.12 SS G_CDS: -2.43 Total: -24.55 kcal Atomic # 7 Polarization: -24.90 SS G_CDS: 0.63 Total: -24.27 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -6.66 SS G_CDS: -2.26 Total: -8.92 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -28.66 -8.98 -37.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048247610.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.752 kcal (2) G-P(sol) polarization free energy of solvation -28.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds