Wall clock time and date at job start Mon Mar 30 2020 02:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38306 * 119.91857 * 2 1 4 4 C 1.38086 * 120.07889 * 180.02562 * 3 2 1 5 5 C 1.38970 * 119.91660 * 359.97204 * 4 3 2 6 6 S 1.76200 * 120.07839 * 179.97438 * 5 4 3 7 7 C 1.81409 * 102.99732 * 84.30088 * 6 5 4 8 8 H 1.08994 * 109.47025 * 309.09441 * 7 6 5 9 9 C 1.53004 * 109.46977 * 69.09033 * 7 6 5 10 10 C 1.50699 * 109.46940 * 189.08974 * 7 6 5 11 11 H 1.08000 * 120.00304 * 354.69150 * 10 7 6 12 12 C 1.37880 * 119.99595 * 174.69868 * 10 7 6 13 13 N 1.31513 * 119.99991 * 158.79711 * 12 10 7 14 14 Si 1.86798 * 120.00037 * 338.78605 * 12 10 7 15 15 H 1.48496 * 109.47250 * 180.02562 * 14 12 10 16 16 H 1.48500 * 109.47386 * 300.01049 * 14 12 10 17 17 H 1.48507 * 109.46756 * 60.00613 * 14 12 10 18 18 C 1.38977 * 119.84377 * 0.28135 * 5 4 3 19 19 C 1.38085 * 119.91404 * 359.44525 * 18 5 4 20 20 H 1.08993 * 109.46818 * 90.00113 * 1 2 3 21 21 H 1.08996 * 109.47252 * 210.00593 * 1 2 3 22 22 H 1.09003 * 109.46734 * 329.99925 * 1 2 3 23 23 H 1.08001 * 119.96142 * 0.02562 * 3 2 1 24 24 H 1.08001 * 120.04003 * 179.97438 * 4 3 2 25 25 H 1.08992 * 109.46840 * 173.83350 * 9 7 6 26 26 H 1.08997 * 109.46740 * 293.83950 * 9 7 6 27 27 H 1.09002 * 109.47176 * 53.83804 * 9 7 6 28 28 H 0.97010 * 120.00035 * 355.06318 * 13 12 10 29 29 H 1.08000 * 120.03787 * 179.72030 * 18 5 4 30 30 H 1.08001 * 119.95391 * 180.27722 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1987 0.0000 4 6 3.5777 1.2026 -0.0005 5 6 4.2742 0.0000 -0.0005 6 16 6.0362 0.0000 -0.0018 7 6 6.4456 0.1764 1.7566 8 1 5.8962 1.0198 2.1747 9 6 6.0591 -1.1033 2.5010 10 6 7.9257 0.4170 1.9061 11 1 8.5699 0.3745 1.0403 12 6 8.4575 0.6914 3.1483 13 7 9.7379 0.4934 3.3737 14 14 7.3593 1.3446 4.5109 15 1 8.1671 1.5573 5.7386 16 1 6.7565 2.6335 4.0859 17 1 6.2811 0.3626 4.7912 18 6 3.5777 -1.2026 -0.0058 19 6 2.1968 -1.1986 0.0004 20 1 -0.3633 0.0000 -1.0276 21 1 -0.3633 -0.8899 0.5139 22 1 -0.3633 0.8900 0.5139 23 1 1.6549 2.1329 0.0004 24 1 4.1158 2.1391 -0.0010 25 1 6.4036 -1.0412 3.5332 26 1 4.9755 -1.2192 2.4859 27 1 6.5232 -1.9611 2.0142 28 1 10.2937 0.0876 2.6900 29 1 4.1157 -2.1390 -0.0104 30 1 1.6549 -2.1328 0.0008 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048247618.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:09 Heat of formation + Delta-G solvation = 5.585825 kcal Electronic energy + Delta-G solvation = -12530.484498 eV Core-core repulsion = 10416.126156 eV Total energy + Delta-G solvation = -2114.358343 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.077 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.94991 -34.04487 -32.66443 -30.99054 -30.79647 -26.88175 -24.86459 -22.50613 -21.48525 -20.88788 -17.77098 -16.95397 -15.22597 -15.11925 -14.73558 -13.85354 -13.71205 -13.61087 -13.28374 -12.93486 -12.38120 -12.19928 -11.97022 -11.89686 -11.46123 -10.90681 -10.74527 -10.58100 -10.29733 -9.84462 -9.50545 -9.05394 -8.77476 -8.37080 -8.16342 -6.88414 -6.58314 -4.20577 1.27801 1.57319 2.60201 3.32585 3.37701 3.51601 3.61895 4.05796 4.40676 4.90088 4.91734 5.10075 5.15338 5.31854 5.49049 5.62977 5.70733 5.80228 6.03357 6.18189 6.24447 6.43633 6.46133 6.46787 6.66046 6.68105 6.85867 7.09114 7.18964 7.76441 8.27308 8.74885 9.43564 10.79258 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.042039 B = 0.007636 C = 0.007163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.886782 B = 3665.964163 C = 3907.891153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.082 4.082 3 C -0.130 4.130 4 C -0.078 4.078 5 C -0.103 4.103 6 S -0.189 6.189 7 C 0.076 3.924 8 H 0.036 0.964 9 C -0.145 4.145 10 C -0.594 4.594 11 H 0.067 0.933 12 C 0.048 3.952 13 N -0.891 5.891 14 Si 1.034 2.966 15 H -0.281 1.281 16 H -0.281 1.281 17 H -0.275 1.275 18 C -0.074 4.074 19 C -0.131 4.131 20 H 0.068 0.932 21 H 0.064 0.936 22 H 0.065 0.935 23 H 0.121 0.879 24 H 0.128 0.872 25 H 0.059 0.941 26 H 0.024 0.976 27 H 0.055 0.945 28 H 0.272 0.728 29 H 0.128 0.872 30 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.452 -1.269 -4.606 17.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.082 4.082 3 C -0.150 4.150 4 C -0.099 4.099 5 C -0.214 4.214 6 S 0.046 5.954 7 C -0.052 4.052 8 H 0.054 0.946 9 C -0.204 4.204 10 C -0.633 4.633 11 H 0.085 0.915 12 C -0.161 4.161 13 N -0.524 5.524 14 Si 0.862 3.138 15 H -0.206 1.206 16 H -0.207 1.207 17 H -0.201 1.201 18 C -0.095 4.095 19 C -0.151 4.151 20 H 0.087 0.913 21 H 0.083 0.917 22 H 0.084 0.916 23 H 0.139 0.861 24 H 0.146 0.854 25 H 0.078 0.922 26 H 0.044 0.956 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.146 0.854 30 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -15.656 -0.800 -3.935 16.163 hybrid contribution -0.851 -0.441 -0.613 1.137 sum -16.507 -1.241 -4.547 17.167 Atomic orbital electron populations 1.20786 0.91402 1.02625 1.02111 1.19966 0.95850 0.93331 0.99047 1.21025 0.94046 0.97420 1.02524 1.21655 0.93889 0.97838 0.96491 1.22089 0.99511 0.94994 1.04798 1.85489 0.95021 1.96607 1.18310 1.21181 1.01106 0.96175 0.86762 0.94633 1.22433 0.97654 0.99253 1.01087 1.21491 0.89329 1.55817 0.96657 0.91462 1.25685 0.97706 0.94098 0.98565 1.70836 1.06566 1.38929 1.36021 0.84179 0.75705 0.77375 0.76571 1.20649 1.20707 1.20119 1.21599 0.93757 0.97691 0.96455 1.21020 0.94070 0.97387 1.02646 0.91293 0.91654 0.91643 0.86101 0.85366 0.92199 0.95646 0.92564 0.91754 0.85439 0.86140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 10.01 36.01 0.36 -0.68 16 2 C -0.08 -1.06 5.88 -104.57 -0.62 -1.67 16 3 C -0.13 -1.81 9.69 -39.61 -0.38 -2.20 16 4 C -0.08 -1.30 9.79 -39.37 -0.39 -1.69 16 5 C -0.10 -1.91 5.42 -39.04 -0.21 -2.12 16 6 S -0.19 -4.17 21.00 -107.50 -2.26 -6.42 16 7 C 0.08 1.85 2.30 -27.88 -0.06 1.79 16 8 H 0.04 0.88 6.76 -51.93 -0.35 0.53 16 9 C -0.14 -3.26 8.78 37.16 0.33 -2.93 16 10 C -0.59 -16.76 8.81 -34.44 -0.30 -17.06 16 11 H 0.07 2.07 7.96 -52.49 -0.42 1.65 16 12 C 0.05 1.36 5.23 -17.82 -0.09 1.26 16 13 N -0.89 -26.83 13.70 55.43 0.76 -26.08 16 14 Si 1.03 24.72 26.39 -169.99 -4.49 20.23 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.27 -6.12 5.97 56.52 0.34 -5.78 16 18 C -0.07 -1.21 9.60 -39.36 -0.38 -1.59 16 19 C -0.13 -1.80 9.69 -39.62 -0.38 -2.18 16 20 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 21 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 22 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 23 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 24 H 0.13 2.09 8.06 -52.49 -0.42 1.66 16 25 H 0.06 1.38 5.21 -51.93 -0.27 1.11 16 26 H 0.02 0.51 7.79 -51.93 -0.40 0.10 16 27 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 28 H 0.27 8.18 8.73 -40.82 -0.36 7.82 16 29 H 0.13 1.99 8.06 -52.49 -0.42 1.57 16 30 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 267.61 15.07 4.03 4.03 Total: -1.00 -29.83 267.61 -8.12 -37.95 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -4.04 Total: -0.64 kcal Atomic # 6 Polarization: -26.94 SS G_CDS: -2.13 Total: -29.07 kcal Atomic # 7 Polarization: -26.83 SS G_CDS: 0.76 Total: -26.08 kcal Atomic # 14 Polarization: 24.72 SS G_CDS: -4.49 Total: 20.23 kcal Atomic # 16 Polarization: -4.17 SS G_CDS: -2.26 Total: -6.42 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -29.83 -8.12 -37.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048247618.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.532 kcal (2) G-P(sol) polarization free energy of solvation -29.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds