Wall clock time and date at job start Mon Mar 30 2020 02:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38306 * 119.91857 * 2 1 4 4 C 1.38086 * 120.07889 * 180.02562 * 3 2 1 5 5 C 1.38970 * 119.91660 * 359.97204 * 4 3 2 6 6 S 1.76200 * 120.07839 * 179.97438 * 5 4 3 7 7 C 1.81409 * 102.99732 * 84.30088 * 6 5 4 8 8 H 1.08994 * 109.47025 * 309.09441 * 7 6 5 9 9 C 1.53004 * 109.46977 * 69.09033 * 7 6 5 10 10 C 1.50699 * 109.46940 * 189.08974 * 7 6 5 11 11 H 1.08000 * 120.00304 * 354.69150 * 10 7 6 12 12 C 1.37880 * 119.99595 * 174.69868 * 10 7 6 13 13 N 1.31513 * 119.99991 * 158.79711 * 12 10 7 14 14 Si 1.86798 * 120.00037 * 338.78605 * 12 10 7 15 15 H 1.48496 * 109.47250 * 180.02562 * 14 12 10 16 16 H 1.48500 * 109.47386 * 300.01049 * 14 12 10 17 17 H 1.48507 * 109.46756 * 60.00613 * 14 12 10 18 18 C 1.38977 * 119.84377 * 0.28135 * 5 4 3 19 19 C 1.38085 * 119.91404 * 359.44525 * 18 5 4 20 20 H 1.08993 * 109.46818 * 90.00113 * 1 2 3 21 21 H 1.08996 * 109.47252 * 210.00593 * 1 2 3 22 22 H 1.09003 * 109.46734 * 329.99925 * 1 2 3 23 23 H 1.08001 * 119.96142 * 0.02562 * 3 2 1 24 24 H 1.08001 * 120.04003 * 179.97438 * 4 3 2 25 25 H 1.08992 * 109.46840 * 173.83350 * 9 7 6 26 26 H 1.08997 * 109.46740 * 293.83950 * 9 7 6 27 27 H 1.09002 * 109.47176 * 53.83804 * 9 7 6 28 28 H 0.97010 * 120.00035 * 355.06318 * 13 12 10 29 29 H 1.08000 * 120.03787 * 179.72030 * 18 5 4 30 30 H 1.08001 * 119.95391 * 180.27722 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1987 0.0000 4 6 3.5777 1.2026 -0.0005 5 6 4.2742 0.0000 -0.0005 6 16 6.0362 0.0000 -0.0018 7 6 6.4456 0.1764 1.7566 8 1 5.8962 1.0198 2.1747 9 6 6.0591 -1.1033 2.5010 10 6 7.9257 0.4170 1.9061 11 1 8.5699 0.3745 1.0403 12 6 8.4575 0.6914 3.1483 13 7 9.7379 0.4934 3.3737 14 14 7.3593 1.3446 4.5109 15 1 8.1671 1.5573 5.7386 16 1 6.7565 2.6335 4.0859 17 1 6.2811 0.3626 4.7912 18 6 3.5777 -1.2026 -0.0058 19 6 2.1968 -1.1986 0.0004 20 1 -0.3633 0.0000 -1.0276 21 1 -0.3633 -0.8899 0.5139 22 1 -0.3633 0.8900 0.5139 23 1 1.6549 2.1329 0.0004 24 1 4.1158 2.1391 -0.0010 25 1 6.4036 -1.0412 3.5332 26 1 4.9755 -1.2192 2.4859 27 1 6.5232 -1.9611 2.0142 28 1 10.2937 0.0876 2.6900 29 1 4.1157 -2.1390 -0.0104 30 1 1.6549 -2.1328 0.0008 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048247618.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:09 Heat of formation + Delta-G solvation = -10.903372 kcal Electronic energy + Delta-G solvation = -12531.199524 eV Core-core repulsion = 10416.126156 eV Total energy + Delta-G solvation = -2115.073368 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.077 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.07751 -36.11672 -33.74638 -33.00620 -31.95003 -27.85471 -26.89576 -23.68051 -23.09573 -22.36526 -19.80571 -18.42195 -16.79478 -16.24466 -16.16498 -15.56267 -15.15130 -14.86093 -14.52345 -14.40092 -14.16351 -13.50717 -13.25625 -13.07256 -13.04780 -12.53069 -12.32507 -11.99291 -11.96139 -11.64347 -11.32801 -10.90557 -10.55185 -9.92547 -9.50551 -8.84550 -8.62788 -6.48619 0.03995 0.42535 1.05911 1.41772 1.47763 1.67751 2.00280 2.41927 2.77575 2.91796 3.88666 3.99794 4.07623 4.34902 4.42710 4.49635 4.54989 4.65759 4.74785 4.80251 4.88208 4.97179 5.10077 5.20305 5.33906 5.36034 5.47283 5.60796 5.68473 5.93446 5.99716 6.40896 7.24064 8.50636 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.042039 B = 0.007636 C = 0.007163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.886782 B = 3665.964163 C = 3907.891153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.070 4.070 3 C -0.129 4.129 4 C -0.093 4.093 5 C -0.127 4.127 6 S -0.224 6.224 7 C 0.073 3.927 8 H 0.036 0.964 9 C -0.135 4.135 10 C -0.601 4.601 11 H 0.024 0.976 12 C 0.001 3.999 13 N -0.920 5.920 14 Si 1.074 2.926 15 H -0.280 1.280 16 H -0.266 1.266 17 H -0.245 1.245 18 C -0.084 4.084 19 C -0.128 4.128 20 H 0.085 0.915 21 H 0.080 0.920 22 H 0.078 0.922 23 H 0.151 0.849 24 H 0.122 0.878 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.257 0.743 29 H 0.127 0.873 30 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.709 -1.326 -4.114 21.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.071 4.071 3 C -0.148 4.148 4 C -0.114 4.114 5 C -0.239 4.239 6 S 0.011 5.989 7 C -0.056 4.056 8 H 0.054 0.946 9 C -0.194 4.194 10 C -0.639 4.639 11 H 0.043 0.957 12 C -0.200 4.200 13 N -0.554 5.554 14 Si 0.895 3.105 15 H -0.205 1.205 16 H -0.191 1.191 17 H -0.169 1.169 18 C -0.105 4.105 19 C -0.148 4.148 20 H 0.103 0.897 21 H 0.099 0.901 22 H 0.097 0.903 23 H 0.168 0.832 24 H 0.140 0.860 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.145 0.855 30 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -19.912 -0.867 -3.466 20.230 hybrid contribution 0.352 -0.439 -0.928 1.085 sum -19.561 -1.306 -4.394 20.091 Atomic orbital electron populations 1.20884 0.88190 1.04141 1.03573 1.20487 0.98100 0.92475 0.96011 1.21356 0.92755 0.99383 1.01324 1.21717 0.95391 0.96937 0.97355 1.21905 0.96252 0.96867 1.08830 1.85462 1.00107 1.96764 1.16568 1.21005 0.98399 0.97073 0.89083 0.94597 1.22274 0.99188 0.97784 1.00160 1.21580 0.91361 1.55583 0.95422 0.95737 1.27121 0.98107 0.93529 1.01287 1.70957 1.07679 1.40921 1.35858 0.83690 0.74937 0.78188 0.73735 1.20526 1.19066 1.16892 1.21678 0.95150 0.96778 0.96890 1.21380 0.92859 0.99301 1.01253 0.89651 0.90135 0.90274 0.83157 0.86042 0.92732 0.93085 0.93187 0.93396 0.85536 0.82942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 10.01 71.24 0.71 -0.72 16 2 C -0.07 -1.50 5.88 -19.83 -0.12 -1.61 16 3 C -0.13 -3.11 9.69 22.25 0.22 -2.90 16 4 C -0.09 -2.98 9.79 22.41 0.22 -2.76 16 5 C -0.13 -4.61 5.42 22.62 0.12 -4.49 16 6 S -0.22 -10.10 21.00 -56.49 -1.19 -11.29 16 7 C 0.07 3.58 2.30 29.85 0.07 3.65 16 8 H 0.04 1.76 6.76 -2.39 -0.02 1.74 16 9 C -0.13 -5.96 8.78 71.98 0.63 -5.32 16 10 C -0.60 -35.18 8.81 25.60 0.23 -34.96 16 11 H 0.02 1.60 7.96 -2.91 -0.02 1.58 16 12 C 0.00 0.07 5.23 84.66 0.44 0.52 16 13 N -0.92 -57.37 13.70 21.45 0.29 -57.08 16 14 Si 1.07 49.34 26.39 68.60 1.81 51.15 16 15 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 16 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 17 H -0.24 -10.00 5.97 99.48 0.59 -9.41 16 18 C -0.08 -2.59 9.60 22.41 0.22 -2.37 16 19 C -0.13 -3.00 9.69 22.25 0.22 -2.79 16 20 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 21 H 0.08 0.85 8.08 -2.39 -0.02 0.83 16 22 H 0.08 0.86 8.08 -2.39 -0.02 0.84 16 23 H 0.15 2.71 8.06 -2.91 -0.02 2.68 16 24 H 0.12 3.91 8.06 -2.91 -0.02 3.89 16 25 H 0.05 2.44 5.21 -2.39 -0.01 2.42 16 26 H 0.05 1.96 7.79 -2.39 -0.02 1.95 16 27 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.26 16.31 8.73 -92.70 -0.81 15.50 16 29 H 0.13 3.80 8.06 -2.91 -0.02 3.77 16 30 H 0.15 2.58 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -67.16 267.61 4.83 -62.33 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: 0.96 Total: 8.63 kcal Atomic # 6 Polarization: -56.71 SS G_CDS: 2.95 Total: -53.75 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: 0.29 Total: -57.08 kcal Atomic # 14 Polarization: 49.34 SS G_CDS: 1.81 Total: 51.15 kcal Atomic # 16 Polarization: -10.10 SS G_CDS: -1.19 Total: -11.29 kcal Total: -67.16 4.83 -62.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048247618.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.432 kcal (2) G-P(sol) polarization free energy of solvation -67.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds