Wall clock time and date at job start Mon Mar 30 2020 02:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38304 * 119.92165 * 2 1 4 4 C 1.38075 * 120.08398 * 179.74999 * 3 2 1 5 5 C 1.38970 * 119.91755 * 0.25198 * 4 3 2 6 6 S 1.76212 * 120.08230 * 179.97438 * 5 4 3 7 7 C 1.81395 * 103.00039 * 96.27669 * 6 5 4 8 8 H 1.09007 * 109.46841 * 52.53217 * 7 6 5 9 9 C 1.52998 * 109.47275 * 292.53794 * 7 6 5 10 10 C 1.50697 * 109.47193 * 172.53129 * 7 6 5 11 11 H 1.08001 * 119.99802 * 0.02562 * 10 7 6 12 12 C 1.37878 * 120.00211 * 179.97438 * 10 7 6 13 13 N 1.31516 * 119.99887 * 0.02562 * 12 10 7 14 14 Si 1.86796 * 119.99910 * 180.02562 * 12 10 7 15 15 H 1.48502 * 109.47049 * 90.00506 * 14 12 10 16 16 H 1.48500 * 109.47056 * 210.00018 * 14 12 10 17 17 H 1.48496 * 109.47583 * 330.00261 * 14 12 10 18 18 C 1.38975 * 119.84347 * 0.02562 * 5 4 3 19 19 C 1.38084 * 119.91595 * 359.97438 * 18 5 4 20 20 H 1.08994 * 109.47174 * 90.00229 * 1 2 3 21 21 H 1.08999 * 109.46701 * 210.00062 * 1 2 3 22 22 H 1.09001 * 109.47211 * 329.99458 * 1 2 3 23 23 H 1.07999 * 119.95748 * 0.02585 * 3 2 1 24 24 H 1.08001 * 120.04549 * 180.28153 * 4 3 2 25 25 H 1.09001 * 109.47042 * 298.65164 * 9 7 6 26 26 H 1.08990 * 109.47732 * 58.65314 * 9 7 6 27 27 H 1.08997 * 109.47071 * 178.66233 * 9 7 6 28 28 H 0.96994 * 119.99816 * 179.97438 * 13 12 10 29 29 H 1.07998 * 120.04383 * 180.02562 * 18 5 4 30 30 H 1.07999 * 119.96011 * 180.02562 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1987 0.0000 4 6 3.5776 1.2026 0.0052 5 6 4.2741 0.0001 0.0052 6 16 6.0362 0.0000 0.0111 7 6 6.4384 -0.1968 1.7690 8 1 5.9095 -1.0624 2.1679 9 6 6.0118 1.0581 2.5333 10 6 7.9234 -0.3995 1.9249 11 1 8.5616 -0.4087 1.0537 12 6 8.4676 -0.5724 3.1799 13 7 7.6906 -0.5607 4.2409 14 14 10.3086 -0.8230 3.3732 15 1 10.9729 0.4948 3.5386 16 1 10.5709 -1.6631 4.5693 17 1 10.8456 -1.4999 2.1655 18 6 3.5777 -1.2026 -0.0007 19 6 2.1968 -1.1987 -0.0059 20 1 -0.3633 0.0000 -1.0276 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3634 0.8899 0.5139 23 1 1.6549 2.1329 0.0004 24 1 4.1157 2.1390 0.0098 25 1 6.5582 1.9201 2.1504 26 1 4.9419 1.2182 2.4009 27 1 6.2318 0.9303 3.5932 28 1 8.0734 -0.6827 5.1237 29 1 4.1157 -2.1390 -0.0003 30 1 1.6549 -2.1329 -0.0100 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048247621.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:10 Heat of formation + Delta-G solvation = -8.974901 kcal Electronic energy + Delta-G solvation = -12469.665310 eV Core-core repulsion = 10354.675567 eV Total energy + Delta-G solvation = -2114.989743 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.077 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.05658 -36.06489 -33.69725 -32.32227 -31.93028 -27.89270 -27.27692 -23.73744 -23.23173 -22.39516 -18.95739 -18.02660 -16.95948 -16.26318 -16.20750 -15.62616 -15.00784 -14.76608 -14.45311 -14.37355 -13.85163 -13.26362 -13.06268 -13.01576 -12.85493 -12.79299 -12.44843 -12.26897 -11.96862 -11.67965 -11.39978 -10.85115 -10.57758 -9.90707 -9.42072 -8.54576 -8.22471 -6.40356 0.08325 0.44161 1.14579 1.41890 1.42000 1.54313 2.09015 2.39029 2.80426 3.05444 3.89582 4.00690 4.08766 4.44048 4.50913 4.62032 4.76108 4.80352 4.83750 4.87321 4.88515 5.10940 5.20359 5.33160 5.37213 5.49278 5.57678 5.61471 5.75461 6.01556 6.03464 6.62758 7.26952 8.82528 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.056722 B = 0.006477 C = 0.006365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.513925 B = 4322.114393 C = 4398.118580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.073 4.073 3 C -0.129 4.129 4 C -0.086 4.086 5 C -0.123 4.123 6 S -0.233 6.233 7 C 0.106 3.894 8 H 0.009 0.991 9 C -0.119 4.119 10 C -0.530 4.530 11 H 0.057 0.943 12 C 0.024 3.976 13 N -0.914 5.914 14 Si 0.971 3.029 15 H -0.270 1.270 16 H -0.276 1.276 17 H -0.269 1.269 18 C -0.095 4.095 19 C -0.130 4.130 20 H 0.087 0.913 21 H 0.077 0.923 22 H 0.079 0.921 23 H 0.153 0.847 24 H 0.126 0.874 25 H 0.038 0.962 26 H 0.026 0.974 27 H 0.068 0.932 28 H 0.268 0.732 29 H 0.119 0.881 30 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.769 1.611 -6.269 14.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.074 4.074 3 C -0.149 4.149 4 C -0.106 4.106 5 C -0.234 4.234 6 S 0.002 5.998 7 C -0.021 4.021 8 H 0.027 0.973 9 C -0.179 4.179 10 C -0.569 4.569 11 H 0.075 0.925 12 C -0.177 4.177 13 N -0.552 5.552 14 Si 0.795 3.205 15 H -0.195 1.195 16 H -0.202 1.202 17 H -0.194 1.194 18 C -0.116 4.116 19 C -0.150 4.150 20 H 0.105 0.895 21 H 0.096 0.904 22 H 0.098 0.902 23 H 0.171 0.829 24 H 0.144 0.856 25 H 0.057 0.943 26 H 0.045 0.955 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.137 0.863 30 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -12.013 1.680 -6.959 13.984 hybrid contribution 0.407 -0.358 1.300 1.408 sum -11.606 1.322 -5.660 12.980 Atomic orbital electron populations 1.20873 0.88112 1.04055 1.03619 1.20483 0.98147 0.92447 0.96276 1.21380 0.92894 0.99290 1.01332 1.21671 0.95168 0.96814 0.96978 1.21889 0.96603 0.96728 1.08194 1.85119 0.99996 1.96608 1.18097 1.20714 0.98678 0.96384 0.86369 0.97304 1.21817 0.96791 0.96823 1.02432 1.20923 0.91160 1.51512 0.93326 0.92464 1.25739 1.03137 0.94001 0.94856 1.69996 1.36964 1.49386 0.98824 0.85360 0.78763 0.78523 0.77886 1.19547 1.20160 1.19355 1.21694 0.95417 0.96933 0.97530 1.21344 0.92782 0.99375 1.01470 0.89483 0.90391 0.90181 0.82919 0.85574 0.94313 0.95499 0.91302 0.92254 0.86312 0.83262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.67 10.01 71.24 0.71 -0.96 16 2 C -0.07 -1.77 5.88 -19.83 -0.12 -1.89 16 3 C -0.13 -3.41 9.69 22.25 0.22 -3.20 16 4 C -0.09 -2.90 9.23 22.41 0.21 -2.69 16 5 C -0.12 -4.85 5.22 22.62 0.12 -4.73 16 6 S -0.23 -10.89 21.01 -56.49 -1.19 -12.08 16 7 C 0.11 5.68 2.72 29.85 0.08 5.77 16 8 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 9 C -0.12 -6.04 8.88 71.98 0.64 -5.40 16 10 C -0.53 -30.32 8.58 25.60 0.22 -30.10 16 11 H 0.06 3.30 7.71 -2.91 -0.02 3.27 16 12 C 0.02 1.32 5.30 84.65 0.45 1.77 16 13 N -0.91 -52.42 11.33 21.45 0.24 -52.17 16 14 Si 0.97 43.67 29.54 68.60 2.03 45.70 16 15 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 16 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 17 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 18 C -0.10 -3.36 9.79 22.41 0.22 -3.14 16 19 C -0.13 -3.57 9.69 22.25 0.22 -3.35 16 20 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 21 H 0.08 1.04 8.09 -2.39 -0.02 1.02 16 22 H 0.08 1.03 8.08 -2.39 -0.02 1.01 16 23 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 24 H 0.13 4.17 8.06 -2.91 -0.02 4.14 16 25 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.03 1.23 7.16 -2.39 -0.02 1.21 16 27 H 0.07 3.78 6.10 -2.39 -0.01 3.77 16 28 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 29 H 0.12 4.25 8.06 -2.91 -0.02 4.23 16 30 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -63.32 270.31 5.15 -58.17 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: 1.11 Total: 8.31 kcal Atomic # 6 Polarization: -50.89 SS G_CDS: 2.96 Total: -47.93 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: 0.24 Total: -52.17 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: -10.89 SS G_CDS: -1.19 Total: -12.08 kcal Total: -63.32 5.15 -58.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048247621.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.194 kcal (2) G-P(sol) polarization free energy of solvation -63.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds