Wall clock time and date at job start Mon Mar 30 2020 02:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38108 * 120.03979 * 2 1 4 4 C 1.38284 * 120.07935 * 180.29683 * 3 2 1 5 5 C 1.38323 * 120.16145 * 359.67691 * 4 3 2 6 6 C 1.38056 * 120.07865 * 359.97438 * 5 4 3 7 7 C 1.38947 * 120.04370 * 179.67074 * 2 1 3 8 8 S 1.76199 * 120.07963 * 0.02562 * 7 2 1 9 9 C 1.81408 * 103.00180 * 173.87632 * 8 7 2 10 10 H 1.08996 * 109.46790 * 51.47267 * 9 8 7 11 11 C 1.52999 * 109.47115 * 171.47619 * 9 8 7 12 12 C 1.50696 * 109.46586 * 291.47313 * 9 8 7 13 13 H 1.08004 * 120.00320 * 0.02562 * 12 9 8 14 14 C 1.37880 * 119.99681 * 179.72275 * 12 9 8 15 15 N 1.31513 * 120.00079 * 0.27641 * 14 12 9 16 16 Si 1.86798 * 120.00032 * 180.27629 * 14 12 9 17 17 H 1.48499 * 109.47316 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47242 * 120.00164 * 16 14 12 19 19 H 1.48501 * 109.47292 * 240.00338 * 16 14 12 20 20 H 1.08996 * 109.47256 * 270.32107 * 1 2 3 21 21 H 1.08993 * 109.47217 * 30.32867 * 1 2 3 22 22 H 1.09010 * 109.46617 * 150.32321 * 1 2 3 23 23 H 1.07999 * 119.95739 * 359.97438 * 3 2 1 24 24 H 1.08000 * 119.91457 * 179.69384 * 4 3 2 25 25 H 1.07997 * 119.95783 * 180.02562 * 5 4 3 26 26 H 1.08005 * 120.03978 * 180.02562 * 6 5 4 27 27 H 1.09001 * 109.47118 * 186.20937 * 11 9 8 28 28 H 1.09000 * 109.47306 * 306.21140 * 11 9 8 29 29 H 1.09005 * 109.47434 * 66.20798 * 11 9 8 30 30 H 0.97002 * 119.99952 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1956 0.0000 4 6 3.5812 1.1965 -0.0062 5 6 4.2770 0.0011 -0.0057 6 6 3.5926 -1.1979 0.0016 7 6 2.2027 -1.2028 0.0069 8 16 1.3249 -2.7306 0.0150 9 6 2.6456 -3.9609 -0.1662 10 1 3.4190 -3.7762 0.5793 11 6 2.0675 -5.3631 0.0351 12 6 3.2428 -3.8572 -1.5459 13 1 2.8659 -3.1241 -2.2438 14 6 4.2746 -4.6939 -1.9152 15 7 4.7339 -5.5862 -1.0653 16 14 5.0200 -4.5601 -3.6228 17 1 4.3308 -3.4853 -4.3810 18 1 6.4647 -4.2361 -3.5083 19 1 4.8576 -5.8522 -4.3365 20 1 -0.3633 0.0058 1.0276 21 1 -0.3633 0.8870 -0.5189 22 1 -0.3633 -0.8930 -0.5089 23 1 1.6583 2.1308 -0.0004 24 1 4.1191 2.1330 -0.0112 25 1 5.3570 0.0057 -0.0101 26 1 4.1366 -2.1310 0.0024 27 1 2.8769 -6.0932 0.0360 28 1 1.5393 -5.4051 0.9877 29 1 1.3743 -5.5901 -0.7749 30 1 5.4595 -6.1751 -1.3253 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048247933.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:12 Heat of formation + Delta-G solvation = 4.858425 kcal Electronic energy + Delta-G solvation = -12830.507725 eV Core-core repulsion = 10716.117840 eV Total energy + Delta-G solvation = -2114.389885 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.077 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.53510 -34.17886 -32.29149 -30.60079 -30.12344 -26.45894 -25.33021 -22.19010 -21.84380 -20.37426 -16.76266 -16.41088 -15.38964 -14.89117 -14.61540 -13.75249 -13.52551 -13.35202 -12.93773 -12.59455 -11.92237 -11.70881 -11.53103 -11.51328 -11.03131 -10.93978 -10.62221 -10.46733 -10.34576 -9.99527 -9.37416 -8.97358 -8.90128 -8.46938 -8.20308 -6.54434 -6.12327 -4.26961 1.83145 1.94333 2.71029 3.21372 3.29986 3.35444 3.70667 4.27027 4.32900 5.12846 5.28168 5.38631 5.57875 5.68031 5.95551 5.98291 6.13793 6.31101 6.41939 6.59607 6.66025 6.73150 6.79543 6.92120 7.07006 7.09548 7.32182 7.52132 7.59010 7.80038 8.02078 8.74600 9.37852 10.86440 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.028558 B = 0.010341 C = 0.008587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.222445 B = 2707.093093 C = 3259.916654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.086 4.086 3 C -0.117 4.117 4 C -0.140 4.140 5 C -0.116 4.116 6 C -0.108 4.108 7 C -0.053 4.053 8 S -0.181 6.181 9 C 0.086 3.914 10 H 0.050 0.950 11 C -0.123 4.123 12 C -0.516 4.516 13 H 0.067 0.933 14 C 0.069 3.931 15 N -0.888 5.888 16 Si 0.896 3.104 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.282 1.282 20 H 0.065 0.935 21 H 0.060 0.940 22 H 0.074 0.926 23 H 0.115 0.885 24 H 0.113 0.887 25 H 0.116 0.884 26 H 0.145 0.855 27 H 0.096 0.904 28 H 0.020 0.980 29 H 0.039 0.961 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.387 8.558 2.299 9.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.093 4.093 3 C -0.137 4.137 4 C -0.161 4.161 5 C -0.136 4.136 6 C -0.132 4.132 7 C -0.167 4.167 8 S 0.066 5.934 9 C -0.041 4.041 10 H 0.067 0.933 11 C -0.183 4.183 12 C -0.555 4.555 13 H 0.085 0.915 14 C -0.135 4.135 15 N -0.525 5.525 16 Si 0.723 3.277 17 H -0.195 1.195 18 H -0.208 1.208 19 H -0.208 1.208 20 H 0.084 0.916 21 H 0.079 0.921 22 H 0.093 0.907 23 H 0.133 0.867 24 H 0.131 0.869 25 H 0.134 0.866 26 H 0.163 0.837 27 H 0.115 0.885 28 H 0.039 0.961 29 H 0.058 0.942 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.490 8.040 2.425 9.523 hybrid contribution 1.949 0.263 -1.105 2.256 sum -2.541 8.303 1.320 8.783 Atomic orbital electron populations 1.20731 0.91468 1.02608 1.01952 1.19529 0.95676 0.91662 1.02443 1.20768 0.94158 0.96540 1.02190 1.20963 0.94192 0.97559 1.03383 1.21020 0.99429 0.92372 1.00784 1.21633 0.93191 0.99585 0.98772 1.21621 0.96266 0.96403 1.02408 1.84711 1.20917 0.98341 1.89392 1.21144 0.91467 0.90837 1.00647 0.93254 1.21618 1.00967 0.98246 0.97461 1.21290 1.17429 1.19374 0.97403 0.91529 1.24966 0.96237 0.94815 0.97475 1.69882 1.26981 1.20740 1.34943 0.86443 0.78966 0.78186 0.84058 1.19508 1.20843 1.20790 0.91585 0.92137 0.90699 0.86715 0.86924 0.86594 0.83722 0.88540 0.96130 0.94157 0.92634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.67 9.57 36.01 0.34 -1.33 16 2 C -0.09 -1.55 5.90 -104.41 -0.62 -2.17 16 3 C -0.12 -1.86 9.70 -39.61 -0.38 -2.24 16 4 C -0.14 -2.21 10.04 -39.53 -0.40 -2.61 16 5 C -0.12 -2.07 10.04 -39.62 -0.40 -2.46 16 6 C -0.11 -2.26 8.82 -39.37 -0.35 -2.61 16 7 C -0.05 -1.11 6.04 -39.04 -0.24 -1.35 16 8 S -0.18 -3.95 19.45 -107.50 -2.09 -6.04 16 9 C 0.09 2.12 2.00 -27.89 -0.06 2.06 16 10 H 0.05 1.29 6.95 -51.93 -0.36 0.93 16 11 C -0.12 -2.90 8.89 37.16 0.33 -2.56 16 12 C -0.52 -13.62 6.98 -34.44 -0.24 -13.86 16 13 H 0.07 1.83 7.71 -52.48 -0.40 1.43 16 14 C 0.07 1.82 5.31 -17.82 -0.09 1.73 16 15 N -0.89 -24.06 11.40 55.43 0.63 -23.43 16 16 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 17 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 20 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 21 H 0.06 0.77 8.09 -51.93 -0.42 0.35 16 22 H 0.07 1.22 6.79 -51.92 -0.35 0.87 16 23 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 24 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 25 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 26 H 0.15 3.35 5.12 -52.48 -0.27 3.08 16 27 H 0.10 2.43 6.27 -51.93 -0.33 2.11 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 262.81 15.07 3.96 3.96 Total: -1.00 -27.15 262.81 -8.42 -35.56 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -3.80 Total: 1.50 kcal Atomic # 6 Polarization: -25.32 SS G_CDS: -2.09 Total: -27.41 kcal Atomic # 7 Polarization: -24.06 SS G_CDS: 0.63 Total: -23.43 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: -3.95 SS G_CDS: -2.09 Total: -6.04 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -27.15 -8.42 -35.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048247933.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.421 kcal (2) G-P(sol) polarization free energy of solvation -27.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds