Wall clock time and date at job start Mon Mar 30 2020 02:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38105 * 120.04192 * 2 1 4 4 C 1.38276 * 120.08331 * 179.97438 * 3 2 1 5 5 C 1.38330 * 120.15838 * 0.04500 * 4 3 2 6 6 C 1.38056 * 120.07926 * 359.97438 * 5 4 3 7 7 C 1.38956 * 120.03867 * 179.72496 * 2 1 3 8 8 S 1.76194 * 120.07995 * 359.97438 * 7 2 1 9 9 C 1.81398 * 102.99898 * 174.06078 * 8 7 2 10 10 H 1.09006 * 109.47063 * 49.52825 * 9 8 7 11 11 C 1.53003 * 109.47218 * 289.52753 * 9 8 7 12 12 C 1.50702 * 109.47003 * 169.52459 * 9 8 7 13 13 H 1.07994 * 120.00235 * 0.02562 * 12 9 8 14 14 C 1.37878 * 119.99696 * 180.02562 * 12 9 8 15 15 N 1.31519 * 120.00386 * 0.02562 * 14 12 9 16 16 Si 1.86802 * 119.99878 * 180.02562 * 14 12 9 17 17 H 1.48507 * 109.47202 * 89.99915 * 16 14 12 18 18 H 1.48496 * 109.47336 * 209.99951 * 16 14 12 19 19 H 1.48498 * 109.47165 * 330.00127 * 16 14 12 20 20 H 1.08997 * 109.46690 * 89.99974 * 1 2 3 21 21 H 1.09002 * 109.47068 * 330.00032 * 1 2 3 22 22 H 1.09000 * 109.47144 * 210.00191 * 1 2 3 23 23 H 1.08001 * 119.95833 * 359.97438 * 3 2 1 24 24 H 1.07996 * 119.92401 * 180.02562 * 4 3 2 25 25 H 1.07993 * 119.95781 * 180.02562 * 5 4 3 26 26 H 1.08008 * 120.03889 * 180.02562 * 6 5 4 27 27 H 1.08992 * 109.46963 * 53.73113 * 11 9 8 28 28 H 1.09000 * 109.46857 * 173.73039 * 11 9 8 29 29 H 1.08996 * 109.47014 * 293.72636 * 11 9 8 30 30 H 0.96998 * 119.99921 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1955 0.0000 4 6 3.5812 1.1965 0.0005 5 6 4.2770 0.0010 0.0001 6 6 3.5926 -1.1980 -0.0003 7 6 2.2026 -1.2029 0.0058 8 16 1.3248 -2.7306 0.0138 9 6 2.6458 -3.9611 -0.1634 10 1 3.4340 -3.7549 0.5607 11 6 3.2223 -3.8903 -1.5789 12 6 2.0856 -5.3384 0.0825 13 1 1.0395 -5.4612 0.3211 14 6 2.9087 -6.4417 0.0029 15 7 4.1827 -6.2922 -0.2872 16 14 2.2142 -8.1489 0.3071 17 1 1.7342 -8.7238 -0.9753 18 1 3.2741 -9.0207 0.8743 19 1 1.0821 -8.0595 1.2639 20 1 -0.3632 0.0000 -1.0277 21 1 -0.3633 0.8900 0.5138 22 1 -0.3633 -0.8900 0.5139 23 1 1.6584 2.1308 -0.0004 24 1 4.1193 2.1329 0.0010 25 1 5.3569 0.0055 0.0010 26 1 4.1365 -2.1311 -0.0002 27 1 3.5261 -2.8664 -1.7966 28 1 4.0873 -4.5494 -1.6523 29 1 2.4641 -4.2047 -2.2961 30 1 4.7616 -7.0684 -0.3435 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048247937.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:13 Heat of formation + Delta-G solvation = -8.210924 kcal Electronic energy + Delta-G solvation = -12670.175843 eV Core-core repulsion = 10555.219228 eV Total energy + Delta-G solvation = -2114.956615 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.077 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.98569 -36.20019 -33.72426 -32.73368 -31.49613 -27.77691 -27.38574 -23.66496 -23.50944 -22.19623 -18.90121 -17.91595 -17.08630 -16.58158 -16.16093 -15.43283 -15.21683 -14.80306 -14.42579 -13.98095 -13.75572 -13.31559 -13.15365 -12.95669 -12.85582 -12.76440 -12.48135 -12.28778 -12.02812 -11.60711 -11.34366 -10.77686 -10.55360 -10.42548 -9.63741 -8.26634 -8.19454 -6.43102 0.37579 0.46984 0.96589 1.40300 1.40628 1.52447 1.92734 2.36719 2.82186 3.03144 3.96607 4.02147 4.22649 4.45549 4.57291 4.60802 4.75732 4.79612 4.81193 4.82743 4.88290 5.04947 5.29652 5.33123 5.47258 5.54721 5.60844 5.63259 5.71405 5.98608 6.11207 6.59630 7.24452 8.79832 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.048065 B = 0.007631 C = 0.006827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.400412 B = 3668.276886 C = 4100.213060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.090 4.090 3 C -0.105 4.105 4 C -0.126 4.126 5 C -0.116 4.116 6 C -0.154 4.154 7 C -0.096 4.096 8 S -0.173 6.173 9 C 0.089 3.911 10 H 0.021 0.979 11 C -0.120 4.120 12 C -0.535 4.535 13 H 0.058 0.942 14 C 0.026 3.974 15 N -0.911 5.911 16 Si 0.970 3.030 17 H -0.270 1.270 18 H -0.276 1.276 19 H -0.269 1.269 20 H 0.077 0.923 21 H 0.094 0.906 22 H 0.054 0.946 23 H 0.158 0.842 24 H 0.157 0.843 25 H 0.139 0.861 26 H 0.105 0.895 27 H 0.032 0.968 28 H 0.068 0.932 29 H 0.034 0.966 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.364 12.882 -0.140 13.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.097 4.097 3 C -0.125 4.125 4 C -0.146 4.146 5 C -0.135 4.135 6 C -0.178 4.178 7 C -0.209 4.209 8 S 0.074 5.926 9 C -0.039 4.039 10 H 0.039 0.961 11 C -0.179 4.179 12 C -0.574 4.574 13 H 0.077 0.923 14 C -0.176 4.176 15 N -0.549 5.549 16 Si 0.794 3.206 17 H -0.196 1.196 18 H -0.202 1.202 19 H -0.193 1.193 20 H 0.095 0.905 21 H 0.113 0.887 22 H 0.073 0.927 23 H 0.176 0.824 24 H 0.175 0.825 25 H 0.157 0.843 26 H 0.123 0.877 27 H 0.051 0.949 28 H 0.087 0.913 29 H 0.053 0.947 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.424 12.429 -0.059 12.893 hybrid contribution 1.401 -1.128 0.027 1.799 sum -2.023 11.301 -0.033 11.481 Atomic orbital electron populations 1.20778 0.89740 1.03152 1.03000 1.19939 0.97185 0.91232 1.01302 1.21329 0.94609 0.97211 0.99307 1.21484 0.94418 0.98370 1.00366 1.21300 1.00708 0.91836 0.99696 1.21397 0.93305 0.99531 1.03528 1.22004 0.96602 0.97129 1.05175 1.84984 1.19596 0.97432 1.90544 1.20854 0.92366 0.93760 0.96884 0.96149 1.21853 1.01256 0.98762 0.96076 1.20917 0.96138 0.90246 1.50118 0.92336 1.25721 0.95009 1.02943 0.93924 1.69992 1.05233 1.31785 1.47866 0.85376 0.78215 0.78305 0.78749 1.19573 1.20159 1.19331 0.90461 0.88743 0.92690 0.82400 0.82512 0.84314 0.87718 0.94873 0.91298 0.94700 0.92204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.95 9.58 71.24 0.68 -2.27 16 2 C -0.09 -2.88 5.90 -19.72 -0.12 -2.99 16 3 C -0.11 -2.64 9.69 22.25 0.22 -2.42 16 4 C -0.13 -3.08 10.04 22.30 0.22 -2.85 16 5 C -0.12 -3.49 10.04 22.25 0.22 -3.27 16 6 C -0.15 -5.97 8.06 22.41 0.18 -5.79 16 7 C -0.10 -3.81 5.97 22.62 0.14 -3.67 16 8 S -0.17 -7.88 19.42 -56.49 -1.10 -8.98 16 9 C 0.09 4.69 1.97 29.85 0.06 4.74 16 10 H 0.02 1.17 6.83 -2.39 -0.02 1.16 16 11 C -0.12 -6.01 8.38 71.98 0.60 -5.41 16 12 C -0.54 -30.16 8.58 25.60 0.22 -29.94 16 13 H 0.06 3.31 7.71 -2.91 -0.02 3.29 16 14 C 0.03 1.41 5.30 84.65 0.45 1.86 16 15 N -0.91 -51.54 11.39 21.45 0.24 -51.29 16 16 Si 0.97 43.25 29.54 68.60 2.03 45.27 16 17 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 18 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 19 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 20 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 21 H 0.09 1.89 8.09 -2.39 -0.02 1.87 16 22 H 0.05 1.69 6.77 -2.39 -0.02 1.67 16 23 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 24 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 25 H 0.14 3.49 8.06 -2.91 -0.02 3.47 16 26 H 0.10 4.60 5.00 -2.91 -0.01 4.59 16 27 H 0.03 1.51 6.17 -2.39 -0.01 1.49 16 28 H 0.07 3.71 6.27 -2.39 -0.01 3.69 16 29 H 0.03 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -61.83 260.79 5.17 -56.66 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: 1.12 Total: 10.35 kcal Atomic # 6 Polarization: -54.88 SS G_CDS: 2.88 Total: -52.01 kcal Atomic # 7 Polarization: -51.54 SS G_CDS: 0.24 Total: -51.29 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 16 Polarization: -7.88 SS G_CDS: -1.10 Total: -8.98 kcal Total: -61.83 5.17 -56.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048247937.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.448 kcal (2) G-P(sol) polarization free energy of solvation -61.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds