Wall clock time and date at job start Mon Mar 30 2020 02:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33384 * 125.20171 * 2 1 4 4 C 1.38428 * 114.91974 * 179.79576 * 3 2 1 5 5 C 1.33389 * 114.91875 * 0.42890 * 4 3 2 6 6 C 1.50703 * 125.20136 * 179.85695 * 5 4 3 7 7 H 1.08997 * 109.47101 * 359.72206 * 6 5 4 8 8 C 1.50700 * 109.46740 * 119.72137 * 6 5 4 9 9 H 1.08005 * 120.00054 * 94.71273 * 8 6 5 10 10 C 1.37871 * 120.00266 * 274.70903 * 8 6 5 11 11 N 1.31521 * 119.99986 * 5.02596 * 10 8 6 12 12 Si 1.86805 * 120.00193 * 185.02723 * 10 8 6 13 13 H 1.48503 * 109.46881 * 0.02562 * 12 10 8 14 14 H 1.48505 * 109.47031 * 120.00033 * 12 10 8 15 15 H 1.48497 * 109.47095 * 239.99870 * 12 10 8 16 16 C 1.52999 * 109.47199 * 239.72063 * 6 5 4 17 17 C 1.52998 * 117.49940 * 174.57855 * 16 6 5 18 18 C 1.52997 * 60.03207 * 252.47671 * 17 16 6 19 19 S 1.75881 * 125.20184 * 180.02562 * 2 1 3 20 20 H 1.09006 * 109.47260 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.46709 * 299.99578 * 1 2 3 22 22 H 1.08996 * 109.47510 * 59.99448 * 1 2 3 23 23 H 1.07999 * 122.54288 * 0.02562 * 3 2 1 24 24 H 1.07997 * 122.53980 * 180.27005 * 4 3 2 25 25 H 0.96997 * 119.99991 * 179.97438 * 11 10 8 26 26 H 1.09001 * 115.54883 * 320.24623 * 16 6 5 27 27 H 1.09003 * 117.49721 * 359.97438 * 17 16 6 28 28 H 1.09002 * 117.50064 * 144.97647 * 17 16 6 29 29 H 1.08998 * 117.50068 * 107.50400 * 18 17 16 30 30 H 1.09009 * 117.49737 * 252.52087 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6380 0.8428 0.0045 5 6 3.9751 -0.4478 -0.0009 6 6 5.3861 -0.9771 -0.0008 7 1 6.0872 -0.1426 -0.0006 8 6 5.6066 -1.8188 1.2296 9 1 5.4745 -2.8897 1.1821 10 6 5.9771 -1.2219 2.4159 11 7 6.0421 0.0890 2.5003 12 14 6.3870 -2.2751 3.9033 13 1 6.2390 -3.7098 3.5499 14 1 7.7860 -2.0116 4.3261 15 1 5.4623 -1.9410 5.0162 16 6 5.6104 -1.8314 -1.2501 17 6 7.0247 -2.3585 -1.5009 18 6 6.4626 -1.2336 -2.3724 19 16 2.5209 -1.4372 -0.0006 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 1.8669 2.0895 0.0004 24 1 4.3720 1.6350 0.0093 25 1 6.3024 0.5089 3.3350 26 1 4.7764 -2.4714 -1.5380 27 1 7.7954 -2.0963 -0.7761 28 1 7.1211 -3.3454 -1.9535 29 1 6.8635 -0.2314 -2.2210 30 1 6.1888 -1.4806 -3.3982 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084352332.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:47 Heat of formation + Delta-G solvation = 25.313800 kcal Electronic energy + Delta-G solvation = -12864.161915 eV Core-core repulsion = 10750.659041 eV Total energy + Delta-G solvation = -2113.502873 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.077 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.12364 -37.86718 -34.93841 -32.93819 -30.38446 -26.92170 -24.93719 -23.36335 -23.04072 -21.11570 -19.53306 -18.61459 -17.17783 -16.66579 -16.32197 -15.40671 -15.05572 -14.56212 -14.30872 -13.83760 -13.50647 -13.22839 -12.90664 -12.84046 -12.80414 -12.36324 -12.25738 -12.11664 -11.71731 -11.52815 -11.13427 -11.00896 -10.57918 -10.47422 -9.09492 -8.93598 -8.12327 -6.24308 0.47611 1.05630 1.37315 1.40188 1.46285 1.50857 2.16979 2.41458 3.13607 3.22978 4.03021 4.19931 4.27178 4.35558 4.56073 4.65207 4.80304 4.84407 4.87597 4.98422 5.04970 5.17633 5.23186 5.26855 5.42473 5.52827 5.66086 5.77122 5.89659 5.96078 6.29338 6.85714 7.42590 8.93083 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.021517 B = 0.012173 C = 0.009216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.956763 B = 2299.596930 C = 3037.581324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.215 4.215 3 C -0.140 4.140 4 C -0.190 4.190 5 C -0.101 4.101 6 C 0.127 3.873 7 H 0.029 0.971 8 C -0.510 4.510 9 H 0.054 0.946 10 C 0.020 3.980 11 N -0.911 5.911 12 Si 0.946 3.054 13 H -0.264 1.264 14 H -0.279 1.279 15 H -0.285 1.285 16 C -0.146 4.146 17 C -0.166 4.166 18 C -0.178 4.178 19 S 0.060 5.940 20 H 0.069 0.931 21 H 0.079 0.921 22 H 0.088 0.912 23 H 0.148 0.852 24 H 0.112 0.888 25 H 0.260 0.740 26 H 0.090 0.910 27 H 0.076 0.924 28 H 0.105 0.895 29 H 0.079 0.921 30 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.568 -1.263 -6.291 9.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.332 4.332 3 C -0.170 4.170 4 C -0.218 4.218 5 C -0.218 4.218 6 C 0.107 3.893 7 H 0.047 0.953 8 C -0.548 4.548 9 H 0.072 0.928 10 C -0.181 4.181 11 N -0.549 5.549 12 Si 0.772 3.228 13 H -0.188 1.188 14 H -0.205 1.205 15 H -0.211 1.211 16 C -0.164 4.164 17 C -0.203 4.203 18 C -0.214 4.214 19 S 0.322 5.678 20 H 0.088 0.912 21 H 0.098 0.902 22 H 0.107 0.893 23 H 0.165 0.835 24 H 0.130 0.870 25 H 0.069 0.931 26 H 0.108 0.892 27 H 0.095 0.905 28 H 0.124 0.876 29 H 0.098 0.902 30 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.802 -2.653 -6.170 9.559 hybrid contribution 0.906 1.377 1.218 2.049 sum -5.896 -1.276 -4.952 7.805 Atomic orbital electron populations 1.20294 0.85730 1.03132 1.03499 1.24718 1.00931 0.95042 1.12519 1.20093 0.92375 0.99798 1.04782 1.20025 0.96347 0.96081 1.09317 1.25243 0.99734 0.95607 1.01248 1.17049 0.86613 0.93928 0.91718 0.95264 1.21194 1.46032 0.93174 0.94414 0.92780 1.25692 0.95193 0.95859 1.01308 1.70092 1.48095 1.09788 1.26941 0.85681 0.77747 0.79703 0.79679 1.18813 1.20459 1.21141 1.22357 0.94472 1.02708 0.96886 1.22767 0.96766 0.98394 1.02347 1.23028 1.04594 0.97739 0.96088 1.83693 0.97653 1.11354 1.75071 0.91196 0.90242 0.89327 0.83471 0.87020 0.93103 0.89209 0.90516 0.87639 0.90203 0.87284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.70 10.38 71.24 0.74 -0.96 16 2 C -0.22 -7.67 6.51 24.59 0.16 -7.51 16 3 C -0.14 -5.36 10.05 21.22 0.21 -5.15 16 4 C -0.19 -8.64 10.01 21.22 0.21 -8.43 16 5 C -0.10 -4.77 5.08 24.59 0.12 -4.64 16 6 C 0.13 6.36 2.18 -12.29 -0.03 6.33 16 7 H 0.03 1.65 7.44 -2.39 -0.02 1.63 16 8 C -0.51 -27.55 7.99 25.60 0.20 -27.35 16 9 H 0.05 2.93 7.81 -2.91 -0.02 2.90 16 10 C 0.02 1.08 5.45 84.65 0.46 1.54 16 11 N -0.91 -52.93 13.01 21.45 0.28 -52.65 16 12 Si 0.95 43.88 29.54 68.60 2.03 45.91 16 13 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 14 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 15 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 16 C -0.15 -6.07 5.01 -10.77 -0.05 -6.12 16 17 C -0.17 -6.12 10.01 30.59 0.31 -5.81 16 18 C -0.18 -6.23 10.18 30.62 0.31 -5.92 16 19 S 0.06 2.45 22.88 -56.49 -1.29 1.16 16 20 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 21 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 22 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 23 H 0.15 4.70 8.06 -2.91 -0.02 4.68 16 24 H 0.11 5.28 8.06 -2.91 -0.02 5.25 16 25 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 26 H 0.09 3.63 7.84 -2.39 -0.02 3.61 16 27 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 28 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 29 H 0.08 2.91 8.09 -2.39 -0.02 2.89 16 30 H 0.11 3.16 8.14 -2.38 -0.02 3.14 16 Total: -1.00 -60.62 274.07 4.77 -55.84 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 1.11 Total: 13.76 kcal Atomic # 6 Polarization: -66.68 SS G_CDS: 2.65 Total: -64.02 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: 0.28 Total: -52.65 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 16 Polarization: 2.45 SS G_CDS: -1.29 Total: 1.16 kcal Total: -60.62 4.77 -55.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084352332.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.155 kcal (2) G-P(sol) polarization free energy of solvation -60.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds