Wall clock time and date at job start Mon Mar 30 2020 02:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33397 * 125.19967 * 2 1 4 4 C 1.38421 * 114.91750 * 180.02562 * 3 2 1 5 5 C 1.33385 * 114.92512 * 0.02562 * 4 3 2 6 6 C 1.50702 * 125.20651 * 179.97438 * 5 4 3 7 7 H 1.09005 * 109.47135 * 0.02562 * 6 5 4 8 8 C 1.50697 * 109.47483 * 239.99967 * 6 5 4 9 9 H 1.07999 * 120.00193 * 267.73632 * 8 6 5 10 10 C 1.37880 * 119.99776 * 87.73492 * 8 6 5 11 11 N 1.31506 * 119.99912 * 353.21660 * 10 8 6 12 12 Si 1.86795 * 119.99655 * 173.22204 * 10 8 6 13 13 H 1.48501 * 109.47451 * 59.99861 * 12 10 8 14 14 H 1.48501 * 109.47206 * 299.99720 * 12 10 8 15 15 H 1.48506 * 109.46936 * 179.97438 * 12 10 8 16 16 C 1.53001 * 109.47022 * 119.99547 * 6 5 4 17 17 C 1.53000 * 117.50456 * 254.13103 * 16 6 5 18 18 C 1.52998 * 117.49868 * 185.46813 * 16 6 5 19 19 S 1.75879 * 109.59211 * 0.24295 * 5 4 3 20 20 H 1.09003 * 109.47009 * 90.00063 * 1 2 3 21 21 H 1.09002 * 109.46537 * 209.99919 * 1 2 3 22 22 H 1.08995 * 109.47287 * 329.99796 * 1 2 3 23 23 H 1.07998 * 122.54208 * 0.02562 * 3 2 1 24 24 H 1.08004 * 122.53739 * 180.02562 * 4 3 2 25 25 H 0.97002 * 120.00187 * 2.08092 * 11 10 8 26 26 H 1.09003 * 115.55126 * 39.80683 * 16 6 5 27 27 H 1.08998 * 117.49265 * 0.02562 * 17 16 6 28 28 H 1.09002 * 117.49913 * 145.02000 * 17 16 6 29 29 H 1.09002 * 117.49917 * 214.98188 * 18 16 6 30 30 H 1.08998 * 117.50235 * 359.97438 * 18 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0901 0.0000 4 6 3.6379 0.8430 -0.0006 5 6 3.9751 -0.4476 -0.0016 6 6 5.3861 -0.9769 -0.0029 7 1 6.0873 -0.1423 -0.0024 8 6 5.6061 -1.8178 -1.2339 9 1 5.4357 -2.8836 -1.1974 10 6 6.0248 -1.2263 -2.4070 11 7 6.1039 0.0837 -2.4911 12 14 6.4795 -2.2859 -3.8766 13 1 5.3048 -3.0981 -4.2837 14 1 7.6010 -3.1872 -3.5090 15 1 6.8936 -1.4147 -5.0057 16 6 5.6112 -1.8320 1.2458 17 6 6.4619 -1.2337 2.3679 18 6 7.0258 -2.3583 1.4959 19 16 2.5210 -1.4370 -0.0089 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3632 -0.8900 0.5138 22 1 -0.3633 0.8899 0.5138 23 1 1.8668 2.0896 0.0004 24 1 4.3720 1.6352 -0.0002 25 1 5.8968 0.6327 -1.7187 26 1 4.7776 -2.4729 1.5332 27 1 6.8608 -0.2307 2.2168 28 1 6.1882 -1.4812 3.3936 29 1 7.1229 -3.3452 1.9484 30 1 7.7961 -2.0958 0.7708 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084352334.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:48 Heat of formation + Delta-G solvation = 21.160649 kcal Electronic energy + Delta-G solvation = -12902.975115 eV Core-core repulsion = 10789.292148 eV Total energy + Delta-G solvation = -2113.682968 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.077 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.34451 -37.99344 -35.23295 -32.90826 -30.21566 -26.80136 -24.88838 -23.51567 -23.13362 -21.47014 -19.71426 -18.95865 -17.41751 -16.48685 -15.78375 -15.55854 -15.37840 -14.85489 -14.42295 -13.93618 -13.53501 -13.42603 -13.10208 -12.72770 -12.61794 -12.35889 -12.25129 -12.00553 -11.71117 -11.46267 -11.35581 -11.06350 -10.55278 -10.37425 -9.21710 -9.07259 -8.56447 -6.30202 0.33650 0.92608 1.34456 1.51978 1.58935 1.77466 2.01733 2.56061 3.06628 3.22909 3.89915 4.10297 4.15783 4.23733 4.48298 4.54264 4.64685 4.77147 4.77901 4.83932 4.89571 5.01697 5.07876 5.16225 5.31649 5.39674 5.50645 5.66926 5.78541 6.06697 6.22852 6.63999 7.47984 8.80173 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.021913 B = 0.012035 C = 0.009206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.477031 B = 2326.022824 C = 3040.750661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.211 4.211 3 C -0.140 4.140 4 C -0.197 4.197 5 C -0.118 4.118 6 C 0.115 3.885 7 H 0.019 0.981 8 C -0.583 4.583 9 H 0.047 0.953 10 C -0.024 4.024 11 N -0.932 5.932 12 Si 1.105 2.895 13 H -0.274 1.274 14 H -0.268 1.268 15 H -0.287 1.287 16 C -0.142 4.142 17 C -0.177 4.177 18 C -0.165 4.165 19 S 0.072 5.928 20 H 0.076 0.924 21 H 0.074 0.926 22 H 0.092 0.908 23 H 0.152 0.848 24 H 0.115 0.885 25 H 0.261 0.739 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.111 0.889 29 H 0.107 0.893 30 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.976 -1.825 6.692 9.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.328 4.328 3 C -0.170 4.170 4 C -0.226 4.226 5 C -0.236 4.236 6 C 0.095 3.905 7 H 0.037 0.963 8 C -0.622 4.622 9 H 0.065 0.935 10 C -0.224 4.224 11 N -0.568 5.568 12 Si 0.927 3.073 13 H -0.200 1.200 14 H -0.193 1.193 15 H -0.213 1.213 16 C -0.160 4.160 17 C -0.214 4.214 18 C -0.202 4.202 19 S 0.335 5.665 20 H 0.094 0.906 21 H 0.093 0.907 22 H 0.110 0.890 23 H 0.169 0.831 24 H 0.133 0.867 25 H 0.072 0.928 26 H 0.108 0.892 27 H 0.098 0.902 28 H 0.129 0.871 29 H 0.125 0.875 30 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.753 -3.290 5.120 9.091 hybrid contribution 0.139 1.774 1.337 2.226 sum -6.615 -1.515 6.457 9.367 Atomic orbital electron populations 1.20330 0.85467 1.03940 1.03111 1.24803 1.01150 0.95028 1.11839 1.20122 0.92148 0.99982 1.04733 1.20114 0.96883 0.95859 1.09722 1.25354 1.00294 0.95908 1.02067 1.17158 0.86332 0.93874 0.93148 0.96307 1.21968 1.48852 0.94675 0.96666 0.93509 1.27066 0.93771 0.97792 1.03755 1.70879 1.47825 1.05234 1.32910 0.83089 0.77396 0.73909 0.72877 1.19985 1.19326 1.21278 1.22233 0.94618 1.02668 0.96521 1.23050 1.04440 0.97693 0.96192 1.22775 0.96603 0.98541 1.02258 1.83731 0.97099 1.11101 1.74613 0.90558 0.90699 0.88984 0.83069 0.86661 0.92837 0.89197 0.90220 0.87061 0.87455 0.90687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.71 10.38 71.23 0.74 -0.97 16 2 C -0.21 -7.40 6.51 24.59 0.16 -7.24 16 3 C -0.14 -5.23 10.05 21.22 0.21 -5.01 16 4 C -0.20 -8.77 9.79 21.21 0.21 -8.57 16 5 C -0.12 -5.56 4.95 24.59 0.12 -5.43 16 6 C 0.12 5.75 1.91 -12.29 -0.02 5.73 16 7 H 0.02 1.04 6.64 -2.38 -0.02 1.03 16 8 C -0.58 -31.94 7.98 25.60 0.20 -31.73 16 9 H 0.05 2.57 7.82 -2.91 -0.02 2.55 16 10 C -0.02 -1.37 5.45 84.66 0.46 -0.91 16 11 N -0.93 -56.49 13.62 21.45 0.29 -56.20 16 12 Si 1.10 50.42 29.91 68.60 2.05 52.47 16 13 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 14 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 15 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 16 C -0.14 -5.95 5.01 -10.79 -0.05 -6.01 16 17 C -0.18 -6.22 10.18 30.62 0.31 -5.91 16 18 C -0.16 -6.16 10.02 30.62 0.31 -5.85 16 19 S 0.07 2.93 22.89 -56.49 -1.29 1.64 16 20 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 21 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 22 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 23 H 0.15 4.66 8.06 -2.91 -0.02 4.64 16 24 H 0.12 5.18 8.06 -2.91 -0.02 5.16 16 25 H 0.26 15.94 6.44 -92.71 -0.60 15.34 16 26 H 0.09 3.68 7.86 -2.39 -0.02 3.66 16 27 H 0.08 2.89 8.08 -2.39 -0.02 2.87 16 28 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 29 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 30 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 Total: -1.00 -63.25 271.77 4.98 -58.26 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 1.28 Total: 15.72 kcal Atomic # 6 Polarization: -74.54 SS G_CDS: 2.65 Total: -71.90 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: 0.29 Total: -56.20 kcal Atomic # 14 Polarization: 50.42 SS G_CDS: 2.05 Total: 52.47 kcal Atomic # 16 Polarization: 2.93 SS G_CDS: -1.29 Total: 1.64 kcal Total: -63.25 4.98 -58.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084352334.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.424 kcal (2) G-P(sol) polarization free energy of solvation -63.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds