Wall clock time and date at job start Mon Mar 30 2020 02:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35773 * 117.00490 * 2 1 4 4 C 1.39101 * 119.84658 * 0.02562 * 3 2 1 5 5 C 1.36548 * 120.31043 * 179.97438 * 4 3 2 6 6 C 1.40484 * 120.00163 * 359.97438 * 5 4 3 7 7 C 1.46140 * 120.14693 * 180.02562 * 6 5 4 8 8 C 1.38272 * 120.00372 * 179.97438 * 7 6 5 9 9 C 1.38775 * 120.00133 * 179.97438 * 8 7 6 10 10 H 1.08002 * 120.00414 * 0.02562 * 9 8 7 11 11 C 1.40584 * 119.99894 * 179.72374 * 9 8 7 12 12 N 1.30594 * 119.99964 * 0.27899 * 11 9 8 13 13 Si 1.86803 * 120.00052 * 180.27792 * 11 9 8 14 14 H 1.48496 * 109.47187 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.46906 * 120.00319 * 13 11 9 16 16 H 1.48498 * 109.47018 * 240.00057 * 13 11 9 17 17 C 1.40495 * 119.70405 * 0.29174 * 6 5 4 18 18 C 1.37728 * 119.69248 * 359.47421 * 17 6 5 19 19 F 1.35104 * 120.00111 * 180.22359 * 18 17 6 20 20 H 1.09010 * 109.46547 * 299.99722 * 1 2 3 21 21 H 1.09000 * 109.47436 * 59.99559 * 1 2 3 22 22 H 1.08996 * 109.47359 * 179.97438 * 1 2 3 23 23 H 1.08000 * 119.84321 * 0.02562 * 4 3 2 24 24 H 1.07998 * 119.99846 * 179.97438 * 5 4 3 25 25 H 1.08002 * 120.00174 * 0.02562 * 7 6 5 26 26 H 1.08002 * 119.99456 * 359.97438 * 8 7 6 27 27 H 0.96996 * 120.00284 * 179.97438 * 12 11 9 28 28 H 1.08002 * 120.15187 * 179.72487 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2097 0.0000 4 6 1.2849 2.3743 0.0005 5 6 1.8950 3.5959 0.0011 6 6 3.2973 3.6807 0.0016 7 6 3.9536 4.9864 0.0028 8 6 5.3340 5.0664 0.0038 9 6 5.9572 6.3064 0.0044 10 1 5.3641 7.2090 0.0044 11 6 7.3607 6.3877 0.0113 12 7 8.0780 5.2964 0.0118 13 14 8.1996 8.0568 0.0199 14 1 7.1710 9.1278 0.0173 15 1 9.0415 8.1813 1.2368 16 1 9.0531 8.1879 -1.1882 17 6 4.0659 2.5046 -0.0046 18 6 3.4376 1.2790 -0.0002 19 9 4.1706 0.1441 -0.0016 20 1 -0.3633 0.5139 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 0.2067 2.3121 0.0014 24 1 1.2996 4.4969 0.0011 25 1 3.3605 5.8890 0.0036 26 1 5.9272 4.1639 0.0042 27 1 9.0463 5.3524 0.0162 28 1 5.1444 2.5614 -0.0087 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084452531.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:04 Heat of formation + Delta-G solvation = -69.095000 kcal Electronic energy + Delta-G solvation = -14018.213988 eV Core-core repulsion = 11334.404066 eV Total energy + Delta-G solvation = -2683.809922 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.080 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.00167 -39.09288 -36.75676 -34.66360 -31.84668 -29.88028 -28.86237 -27.05113 -24.85238 -22.09553 -21.43870 -19.01299 -17.62616 -17.28279 -15.99287 -15.78364 -15.47626 -15.06276 -14.41132 -14.12809 -13.77942 -13.34789 -13.10101 -12.22142 -12.05433 -11.77734 -11.64085 -11.43333 -11.19882 -10.70920 -10.65286 -10.52400 -10.02283 -9.96337 -9.59639 -8.60844 -8.04018 -7.32370 -7.01922 -4.52363 1.97052 2.09459 2.74737 2.84413 2.91362 3.53506 3.60342 3.81626 4.56177 5.05031 5.26532 5.30214 5.40338 5.52696 5.66411 5.89151 6.20867 6.23687 6.41851 6.62060 6.79455 6.91180 7.01949 7.25137 7.35514 7.62095 7.66237 7.96363 8.13449 8.23943 8.63963 8.76345 9.66402 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.058735 B = 0.005590 C = 0.005118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.604392 B = 5008.102855 C = 5469.553268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.323 6.323 3 C -0.011 4.011 4 C -0.146 4.146 5 C -0.166 4.166 6 C 0.061 3.939 7 C -0.407 4.407 8 C 0.077 3.923 9 C -0.410 4.410 10 H 0.084 0.916 11 C 0.066 3.934 12 N -0.773 5.773 13 Si 0.926 3.074 14 H -0.254 1.254 15 H -0.267 1.267 16 H -0.267 1.267 17 C -0.199 4.199 18 C 0.100 3.900 19 F -0.149 7.149 20 H 0.047 0.953 21 H 0.047 0.953 22 H 0.089 0.911 23 H 0.117 0.883 24 H 0.114 0.886 25 H 0.088 0.912 26 H 0.094 0.906 27 H 0.294 0.706 28 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.970 -2.129 0.003 6.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.238 6.238 3 C -0.056 4.056 4 C -0.165 4.165 5 C -0.184 4.184 6 C 0.060 3.940 7 C -0.428 4.428 8 C 0.056 3.944 9 C -0.436 4.436 10 H 0.102 0.898 11 C -0.158 4.158 12 N -0.395 5.395 13 Si 0.749 3.251 14 H -0.177 1.177 15 H -0.192 1.192 16 H -0.192 1.192 17 C -0.218 4.218 18 C 0.081 3.919 19 F -0.128 7.128 20 H 0.066 0.934 21 H 0.066 0.934 22 H 0.108 0.892 23 H 0.135 0.865 24 H 0.132 0.868 25 H 0.106 0.894 26 H 0.112 0.888 27 H 0.106 0.894 28 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.580 -2.453 0.004 6.096 hybrid contribution 0.294 0.586 0.008 0.656 sum -5.286 -1.867 0.012 5.606 Atomic orbital electron populations 1.22849 0.79887 1.02664 1.00693 1.85953 1.20048 1.27001 1.90778 1.18627 0.90339 0.84721 1.11869 1.20499 0.98543 0.91960 1.05524 1.20648 0.94288 0.96054 1.07448 1.18822 0.91576 0.93118 0.90494 1.20966 0.93626 0.91992 1.36179 1.20801 0.92945 0.96434 0.84250 1.19923 0.90950 0.95854 1.36871 0.89770 1.26565 0.98597 0.99636 0.91042 1.69507 1.08890 1.30667 1.30406 0.85948 0.79501 0.80545 0.79125 1.17724 1.19191 1.19194 1.21058 1.00525 0.89689 1.10502 1.16901 0.85722 0.82245 1.07047 1.91398 1.77176 1.49727 1.94459 0.93400 0.93405 0.89239 0.86539 0.86830 0.89406 0.88821 0.89448 0.84960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 9.80 101.05 0.99 1.44 15 2 O -0.32 -6.04 10.35 -19.03 -0.20 -6.23 15 3 C -0.01 -0.24 6.71 -38.84 -0.26 -0.50 15 4 C -0.15 -2.75 8.96 -39.87 -0.36 -3.11 15 5 C -0.17 -3.39 9.75 -39.35 -0.38 -3.77 15 6 C 0.06 1.40 5.88 -105.03 -0.62 0.79 15 7 C -0.41 -9.96 9.68 -36.40 -0.35 -10.32 15 8 C 0.08 1.97 8.79 -39.37 -0.35 1.62 15 9 C -0.41 -10.08 9.02 -38.50 -0.35 -10.43 15 10 H 0.08 1.99 7.86 -52.49 -0.41 1.58 15 11 C 0.07 1.50 5.51 -17.19 -0.09 1.41 15 12 N -0.77 -18.28 12.85 55.58 0.71 -17.57 15 13 Si 0.93 16.78 29.57 -169.99 -5.03 11.76 15 14 H -0.25 -4.57 7.11 56.52 0.40 -4.16 15 15 H -0.27 -4.74 7.11 56.52 0.40 -4.34 15 16 H -0.27 -4.74 7.11 56.52 0.40 -4.34 15 17 C -0.20 -4.59 9.40 -38.92 -0.37 -4.95 15 18 C 0.10 2.24 7.30 -39.34 -0.29 1.96 15 19 F -0.15 -3.30 17.11 2.25 0.04 -3.27 15 20 H 0.05 0.57 7.65 -51.92 -0.40 0.17 15 21 H 0.05 0.57 7.65 -51.93 -0.40 0.17 15 22 H 0.09 0.91 8.14 -51.93 -0.42 0.49 15 23 H 0.12 1.78 6.26 -52.49 -0.33 1.46 15 24 H 0.11 2.09 8.06 -52.49 -0.42 1.67 15 25 H 0.09 2.11 8.06 -52.49 -0.42 1.69 15 26 H 0.09 2.46 5.46 -52.49 -0.29 2.17 15 27 H 0.29 6.16 8.29 -40.82 -0.34 5.82 15 28 H 0.13 3.09 6.17 -52.49 -0.32 2.77 15 LS Contribution 255.60 15.07 3.85 3.85 Total: -1.00 -26.61 255.60 -5.59 -32.20 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -2.55 Total: 5.14 kcal Atomic # 6 Polarization: -23.45 SS G_CDS: -2.42 Total: -25.87 kcal Atomic # 7 Polarization: -18.28 SS G_CDS: 0.71 Total: -17.57 kcal Atomic # 8 Polarization: -6.04 SS G_CDS: -0.20 Total: -6.23 kcal Atomic # 9 Polarization: -3.30 SS G_CDS: 0.04 Total: -3.27 kcal Atomic # 14 Polarization: 16.78 SS G_CDS: -5.03 Total: 11.76 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -26.61 -5.59 -32.20 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084452531.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.900 kcal (2) G-P(sol) polarization free energy of solvation -26.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds