Wall clock time and date at job start Mon Mar 30 2020 02:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35773 * 117.00490 * 2 1 4 4 C 1.39101 * 119.84658 * 0.02562 * 3 2 1 5 5 C 1.36548 * 120.31043 * 179.97438 * 4 3 2 6 6 C 1.40484 * 120.00163 * 359.97438 * 5 4 3 7 7 C 1.46140 * 120.14693 * 180.02562 * 6 5 4 8 8 C 1.38272 * 120.00372 * 179.97438 * 7 6 5 9 9 C 1.38775 * 120.00133 * 179.97438 * 8 7 6 10 10 H 1.08002 * 120.00414 * 0.02562 * 9 8 7 11 11 C 1.40584 * 119.99894 * 179.72374 * 9 8 7 12 12 N 1.30594 * 119.99964 * 0.27899 * 11 9 8 13 13 Si 1.86803 * 120.00052 * 180.27792 * 11 9 8 14 14 H 1.48496 * 109.47187 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.46906 * 120.00319 * 13 11 9 16 16 H 1.48498 * 109.47018 * 240.00057 * 13 11 9 17 17 C 1.40495 * 119.70405 * 0.29174 * 6 5 4 18 18 C 1.37728 * 119.69248 * 359.47421 * 17 6 5 19 19 F 1.35104 * 120.00111 * 180.22359 * 18 17 6 20 20 H 1.09010 * 109.46547 * 299.99722 * 1 2 3 21 21 H 1.09000 * 109.47436 * 59.99559 * 1 2 3 22 22 H 1.08996 * 109.47359 * 179.97438 * 1 2 3 23 23 H 1.08000 * 119.84321 * 0.02562 * 4 3 2 24 24 H 1.07998 * 119.99846 * 179.97438 * 5 4 3 25 25 H 1.08002 * 120.00174 * 0.02562 * 7 6 5 26 26 H 1.08002 * 119.99456 * 359.97438 * 8 7 6 27 27 H 0.96996 * 120.00284 * 179.97438 * 12 11 9 28 28 H 1.08002 * 120.15187 * 179.72487 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2097 0.0000 4 6 1.2849 2.3743 0.0005 5 6 1.8950 3.5959 0.0011 6 6 3.2973 3.6807 0.0016 7 6 3.9536 4.9864 0.0028 8 6 5.3340 5.0664 0.0038 9 6 5.9572 6.3064 0.0044 10 1 5.3641 7.2090 0.0044 11 6 7.3607 6.3877 0.0113 12 7 8.0780 5.2964 0.0118 13 14 8.1996 8.0568 0.0199 14 1 7.1710 9.1278 0.0173 15 1 9.0415 8.1813 1.2368 16 1 9.0531 8.1879 -1.1882 17 6 4.0659 2.5046 -0.0046 18 6 3.4376 1.2790 -0.0002 19 9 4.1706 0.1441 -0.0016 20 1 -0.3633 0.5139 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 0.2067 2.3121 0.0014 24 1 1.2996 4.4969 0.0011 25 1 3.3605 5.8890 0.0036 26 1 5.9272 4.1639 0.0042 27 1 9.0463 5.3524 0.0162 28 1 5.1444 2.5614 -0.0087 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084452531.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:04 Heat of formation + Delta-G solvation = -83.274992 kcal Electronic energy + Delta-G solvation = -14018.828879 eV Core-core repulsion = 11334.404066 eV Total energy + Delta-G solvation = -2684.424813 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.080 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.74605 -40.63159 -38.36499 -36.42814 -33.61319 -31.53642 -30.55027 -28.33266 -26.56086 -23.75891 -23.13369 -20.76580 -19.30001 -18.97230 -17.62033 -17.49108 -16.96535 -16.64575 -15.93404 -15.75159 -15.35856 -14.93681 -14.67911 -13.81396 -13.71154 -13.32918 -13.12504 -12.90609 -12.82986 -12.23310 -12.12606 -12.03112 -11.69278 -11.57055 -11.47800 -10.32791 -9.76551 -9.03426 -8.76466 -6.37523 0.26106 0.39548 1.26135 1.35283 1.54087 1.86615 2.10189 2.45557 2.83327 3.41236 3.41287 3.92926 4.18307 4.45500 4.46530 4.51162 4.59664 4.68782 4.75214 4.89232 4.96632 5.21965 5.36245 5.45914 5.62648 5.79799 5.96906 6.18455 6.35831 6.58213 6.79648 6.87647 7.99012 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.058735 B = 0.005590 C = 0.005118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.604392 B = 5008.102855 C = 5469.553268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.341 6.341 3 C 0.007 3.993 4 C -0.138 4.138 5 C -0.154 4.154 6 C 0.034 3.966 7 C -0.420 4.420 8 C 0.054 3.946 9 C -0.440 4.440 10 H 0.088 0.912 11 C 0.025 3.975 12 N -0.810 5.810 13 Si 1.004 2.996 14 H -0.251 1.251 15 H -0.258 1.258 16 H -0.258 1.258 17 C -0.211 4.211 18 C 0.071 3.929 19 F -0.154 7.154 20 H 0.064 0.936 21 H 0.064 0.936 22 H 0.119 0.881 23 H 0.164 0.836 24 H 0.139 0.861 25 H 0.089 0.911 26 H 0.073 0.927 27 H 0.306 0.694 28 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.958 -1.807 0.010 8.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.256 6.256 3 C -0.037 4.037 4 C -0.156 4.156 5 C -0.172 4.172 6 C 0.033 3.967 7 C -0.441 4.441 8 C 0.033 3.967 9 C -0.466 4.466 10 H 0.106 0.894 11 C -0.195 4.195 12 N -0.432 5.432 13 Si 0.822 3.178 14 H -0.174 1.174 15 H -0.182 1.182 16 H -0.182 1.182 17 C -0.230 4.230 18 C 0.052 3.948 19 F -0.133 7.133 20 H 0.083 0.917 21 H 0.083 0.917 22 H 0.137 0.863 23 H 0.181 0.819 24 H 0.157 0.843 25 H 0.107 0.893 26 H 0.091 0.909 27 H 0.117 0.883 28 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.595 -2.164 0.010 7.897 hybrid contribution 0.670 0.228 0.005 0.707 sum -6.925 -1.937 0.016 7.191 Atomic orbital electron populations 1.23317 0.76478 1.05370 1.02222 1.85956 1.23503 1.25960 1.90221 1.18802 0.89749 0.86267 1.08921 1.20913 1.00735 0.90341 1.03591 1.20974 0.93063 0.97944 1.05219 1.18968 0.93196 0.92341 0.92169 1.21041 0.93337 0.92788 1.36964 1.20825 0.93513 0.96305 0.86098 1.20144 0.92413 0.95482 1.38567 0.89430 1.27538 0.98447 1.03749 0.89787 1.69546 1.09867 1.32963 1.30859 0.84827 0.78269 0.75113 0.79622 1.17368 1.18183 1.18183 1.20979 0.99869 0.90655 1.11475 1.17095 0.87043 0.81773 1.08909 1.91371 1.77538 1.49749 1.94659 0.91742 0.91747 0.86291 0.81880 0.84349 0.89277 0.90912 0.88297 0.86941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.80 113.37 1.11 1.54 15 2 O -0.34 -11.72 10.35 -91.01 -0.94 -12.66 15 3 C 0.01 0.29 6.71 22.75 0.15 0.44 15 4 C -0.14 -4.67 8.96 22.08 0.20 -4.47 15 5 C -0.15 -5.93 9.75 22.42 0.22 -5.72 15 6 C 0.03 1.59 5.88 -20.13 -0.12 1.47 15 7 C -0.42 -21.32 9.68 24.33 0.24 -21.09 15 8 C 0.05 2.91 8.79 22.41 0.20 3.11 15 9 C -0.44 -22.51 9.02 22.97 0.21 -22.30 15 10 H 0.09 4.27 7.86 -2.91 -0.02 4.24 15 11 C 0.03 1.18 5.51 85.45 0.47 1.65 15 12 N -0.81 -39.65 12.85 21.95 0.28 -39.37 15 13 Si 1.00 34.23 29.57 68.60 2.03 36.26 15 14 H -0.25 -8.32 7.11 99.48 0.71 -7.61 15 15 H -0.26 -8.33 7.11 99.48 0.71 -7.63 15 16 H -0.26 -8.33 7.11 99.48 0.71 -7.63 15 17 C -0.21 -10.11 9.40 22.70 0.21 -9.90 15 18 C 0.07 3.21 7.30 22.42 0.16 3.37 15 19 F -0.15 -6.98 17.11 44.97 0.77 -6.21 15 20 H 0.06 1.19 7.65 -2.38 -0.02 1.17 15 21 H 0.06 1.19 7.65 -2.39 -0.02 1.17 15 22 H 0.12 1.85 8.14 -2.39 -0.02 1.83 15 23 H 0.16 4.02 6.26 -2.91 -0.02 4.01 15 24 H 0.14 4.64 8.06 -2.91 -0.02 4.62 15 25 H 0.09 4.38 8.06 -2.91 -0.02 4.35 15 26 H 0.07 4.14 5.46 -2.91 -0.02 4.13 15 27 H 0.31 13.07 8.29 -92.71 -0.77 12.30 15 28 H 0.11 5.71 6.17 -2.91 -0.02 5.70 15 Total: -1.00 -59.58 255.60 6.36 -53.22 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: 1.17 Total: 20.66 kcal Atomic # 6 Polarization: -54.94 SS G_CDS: 3.05 Total: -51.89 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.28 Total: -39.37 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: -0.94 Total: -12.66 kcal Atomic # 9 Polarization: -6.98 SS G_CDS: 0.77 Total: -6.21 kcal Atomic # 14 Polarization: 34.23 SS G_CDS: 2.03 Total: 36.26 kcal Total: -59.58 6.36 -53.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084452531.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.059 kcal (2) G-P(sol) polarization free energy of solvation -59.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds