Wall clock time and date at job start Mon Mar 30 2020 02:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47291 * 2 1 4 4 C 1.50696 * 109.47099 * 239.99910 * 2 1 3 5 5 H 1.08005 * 119.99767 * 240.09991 * 4 2 1 6 6 C 1.37880 * 120.00102 * 60.09806 * 4 2 1 7 7 N 1.31515 * 119.99948 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99990 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46925 * 60.00277 * 8 6 4 10 10 H 1.48494 * 109.46849 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46983 * 299.99971 * 8 6 4 12 12 C 1.50703 * 109.47044 * 119.99868 * 2 1 3 13 13 C 1.38312 * 119.91837 * 357.15063 * 12 2 1 14 14 C 1.38079 * 120.07811 * 179.97438 * 13 12 2 15 15 C 1.38974 * 119.91755 * 0.02562 * 14 13 12 16 16 S 1.76201 * 120.07783 * 179.97438 * 15 14 13 17 17 C 1.38973 * 119.84456 * 0.28282 * 15 14 13 18 18 C 1.38086 * 119.91239 * 359.44071 * 17 15 14 19 19 H 1.08993 * 109.47517 * 300.00001 * 1 2 3 20 20 H 1.09001 * 109.46979 * 60.00282 * 1 2 3 21 21 H 1.08999 * 109.46983 * 179.97438 * 1 2 3 22 22 H 1.08992 * 109.47273 * 179.97438 * 3 2 1 23 23 H 1.09001 * 109.47172 * 300.00242 * 3 2 1 24 24 H 1.09003 * 109.46960 * 59.99443 * 3 2 1 25 25 H 0.96994 * 119.99691 * 180.02562 * 7 6 4 26 26 H 1.08001 * 119.95881 * 0.02562 * 13 12 2 27 27 H 1.07997 * 120.03872 * 179.97438 * 14 13 12 28 28 H 1.34503 * 102.99740 * 90.00381 * 16 15 14 29 29 H 1.07999 * 120.04352 * 179.72273 * 17 15 14 30 30 H 1.07999 * 119.95269 * 180.27847 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6519 -1.5895 -1.1313 6 6 1.7009 -0.2382 -2.4827 7 7 0.9460 0.8319 -2.6034 8 14 2.3242 -1.1184 -4.0079 9 1 1.8277 -2.5180 -4.0093 10 1 1.8316 -0.4167 -5.2204 11 1 3.8092 -1.1199 -4.0065 12 6 2.0324 -0.7104 1.2305 13 6 1.1335 -1.1835 2.1692 14 6 1.5900 -1.8353 3.2976 15 6 2.9546 -2.0153 3.4897 16 16 3.5420 -2.8458 4.9284 17 6 3.8552 -1.5329 2.5475 18 6 3.3910 -0.8870 1.4187 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 3.1300 1.4425 0.0005 23 1 1.6767 1.9563 -0.8900 24 1 1.6766 1.9563 0.8900 25 1 0.7126 1.1639 -3.4844 26 1 0.0731 -1.0437 2.0190 27 1 0.8876 -2.2041 4.0303 28 1 3.5815 -4.1329 4.5397 29 1 4.9165 -1.6670 2.6957 30 1 4.0901 -0.5159 0.6839 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000142923357.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:50 Heat of formation + Delta-G solvation = 16.806356 kcal Electronic energy + Delta-G solvation = -13028.297987 eV Core-core repulsion = 10914.426203 eV Total energy + Delta-G solvation = -2113.871784 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.077 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.92325 -35.32230 -31.70952 -30.56306 -28.71384 -25.91445 -25.24616 -22.52024 -21.74207 -19.06871 -17.81773 -16.34130 -15.75001 -14.83108 -14.46584 -14.11186 -13.45912 -13.08993 -12.90135 -12.29103 -11.95246 -11.50949 -11.27616 -11.02823 -10.76407 -10.67740 -10.64181 -10.32821 -10.20277 -9.66833 -9.40863 -8.97717 -8.42553 -8.40831 -8.00280 -7.93530 -6.05703 -4.16557 1.46108 1.95248 2.08497 3.05517 3.25778 3.30932 3.33920 4.28387 4.41888 5.20478 5.38451 5.44303 5.81596 5.99310 6.09353 6.33699 6.48675 6.65174 6.75254 6.78873 6.81955 6.93527 7.06935 7.21525 7.32212 7.51435 7.57010 7.68156 7.98076 8.10013 8.34074 8.83029 9.48944 10.95246 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.042873 B = 0.007548 C = 0.007004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.939887 B = 3708.610793 C = 3996.524242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.090 3.910 3 C -0.127 4.127 4 C -0.504 4.504 5 H 0.056 0.944 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.892 3.108 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.004 3.996 13 C -0.142 4.142 14 C -0.076 4.076 15 C -0.137 4.137 16 S -0.150 6.150 17 C -0.078 4.078 18 C -0.120 4.120 19 H 0.014 0.986 20 H 0.087 0.913 21 H 0.029 0.971 22 H 0.029 0.971 23 H 0.088 0.912 24 H 0.011 0.989 25 H 0.262 0.738 26 H 0.129 0.871 27 H 0.121 0.879 28 H 0.065 0.935 29 H 0.122 0.878 30 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.029 -3.036 8.152 8.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.090 3.910 3 C -0.184 4.184 4 C -0.542 4.542 5 H 0.075 0.925 6 C -0.134 4.134 7 N -0.523 5.523 8 Si 0.720 3.280 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 C 0.004 3.996 13 C -0.162 4.162 14 C -0.097 4.097 15 C -0.249 4.249 16 S 0.007 5.993 17 C -0.098 4.098 18 C -0.140 4.140 19 H 0.033 0.967 20 H 0.105 0.895 21 H 0.048 0.952 22 H 0.048 0.952 23 H 0.107 0.893 24 H 0.030 0.970 25 H 0.072 0.928 26 H 0.147 0.853 27 H 0.139 0.861 28 H 0.030 0.970 29 H 0.140 0.860 30 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.267 -3.158 8.873 9.687 hybrid contribution 0.005 -1.085 -2.067 2.335 sum 2.273 -4.243 6.805 8.336 Atomic orbital electron populations 1.21909 0.97455 0.99212 1.00622 1.17357 0.92817 0.92203 0.88652 1.21807 0.98603 0.97391 1.00621 1.20997 1.31745 1.11951 0.89517 0.92545 1.24897 0.94858 0.94911 0.98780 1.69793 1.36479 1.22571 1.23446 0.86648 0.79250 0.79789 0.82290 1.20347 1.21202 1.20258 1.20925 0.92730 0.91071 0.94893 1.21348 1.00629 1.00214 0.93983 1.21420 0.93775 0.97466 0.97023 1.20890 0.95902 1.09170 0.98932 1.85681 1.88212 1.06400 1.19029 1.21455 0.98710 0.96644 0.93037 1.21156 0.96335 0.99805 0.96723 0.96741 0.89468 0.95202 0.95197 0.89297 0.97030 0.92821 0.85309 0.86091 0.97028 0.86031 0.85307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 6.91 37.16 0.26 -2.80 16 2 C 0.09 2.09 0.58 -156.81 -0.09 2.00 16 3 C -0.13 -2.90 8.09 37.16 0.30 -2.60 16 4 C -0.50 -12.96 7.62 -34.44 -0.26 -13.22 16 5 H 0.06 1.47 7.52 -52.48 -0.39 1.07 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 7 N -0.88 -23.35 9.35 55.43 0.52 -22.83 16 8 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 C 0.00 0.08 4.73 -104.57 -0.49 -0.41 16 13 C -0.14 -2.66 8.97 -39.61 -0.36 -3.02 16 14 C -0.08 -1.28 9.79 -39.37 -0.39 -1.67 16 15 C -0.14 -2.30 6.11 -39.04 -0.24 -2.54 16 16 S -0.15 -2.16 25.78 -107.50 -2.77 -4.93 16 17 C -0.08 -1.34 9.79 -39.36 -0.39 -1.72 16 18 C -0.12 -2.33 8.62 -39.62 -0.34 -2.67 16 19 H 0.01 0.28 7.37 -51.93 -0.38 -0.10 16 20 H 0.09 2.17 6.08 -51.93 -0.32 1.86 16 21 H 0.03 0.65 7.64 -51.93 -0.40 0.26 16 22 H 0.03 0.65 7.55 -51.93 -0.39 0.26 16 23 H 0.09 2.22 6.06 -51.93 -0.31 1.91 16 24 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 25 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 26 H 0.13 2.29 5.89 -52.49 -0.31 1.99 16 27 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 28 H 0.07 0.89 9.07 97.61 0.89 1.77 16 29 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 30 H 0.13 2.49 7.67 -52.49 -0.40 2.09 16 LS Contribution 259.78 15.07 3.91 3.91 Total: -1.00 -25.64 259.78 -7.87 -33.51 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -2.43 Total: 1.91 kcal Atomic # 6 Polarization: -24.92 SS G_CDS: -2.09 Total: -27.01 kcal Atomic # 7 Polarization: -23.35 SS G_CDS: 0.52 Total: -22.83 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: -2.16 SS G_CDS: -2.77 Total: -4.93 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -25.64 -7.87 -33.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000142923357.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.319 kcal (2) G-P(sol) polarization free energy of solvation -25.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds