Wall clock time and date at job start Mon Mar 30 2020 02:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.46666 * 2 1 4 4 C 1.36291 * 119.92625 * 265.23983 * 3 2 1 5 5 C 1.40906 * 119.84407 * 180.27586 * 4 3 2 6 6 C 1.41068 * 120.14360 * 179.76202 * 5 4 3 7 7 H 1.08004 * 120.00192 * 330.09533 * 6 5 4 8 8 C 1.39835 * 119.99987 * 150.09456 * 6 5 4 9 9 N 1.30924 * 119.99905 * 161.71261 * 8 6 5 10 10 Si 1.86801 * 120.00154 * 341.71428 * 8 6 5 11 11 H 1.48502 * 109.46998 * 95.41402 * 10 8 6 12 12 H 1.48501 * 109.47195 * 215.41739 * 10 8 6 13 13 H 1.48504 * 109.46974 * 335.42012 * 10 8 6 14 14 C 1.40945 * 119.71331 * 359.74060 * 5 4 3 15 15 C 1.36257 * 119.84448 * 359.97438 * 14 5 4 16 16 C 1.39675 * 119.92580 * 85.00208 * 3 2 1 17 17 S 1.76200 * 119.84582 * 359.97438 * 16 3 2 18 18 C 1.81003 * 99.99629 * 179.72438 * 17 16 3 19 19 H 1.08994 * 109.47249 * 299.99717 * 1 2 3 20 20 H 1.08994 * 109.47136 * 60.00322 * 1 2 3 21 21 H 1.09007 * 109.46816 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47249 * 240.00283 * 2 1 3 23 23 H 1.08993 * 109.47652 * 119.99592 * 2 1 3 24 24 H 1.07999 * 120.07338 * 0.02562 * 4 3 2 25 25 H 0.96999 * 120.00007 * 179.97438 * 9 8 6 26 26 H 1.07999 * 120.08187 * 179.97438 * 14 5 4 27 27 H 1.07998 * 119.92691 * 179.97438 * 15 14 5 28 28 H 1.09001 * 109.47418 * 60.00061 * 18 17 16 29 29 H 1.09007 * 109.46977 * 180.02562 * 18 17 16 30 30 H 1.09001 * 109.47356 * 299.99774 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3512 2.0293 -1.1771 5 6 2.8262 3.3559 -1.1746 6 6 3.1630 3.9900 -2.3889 7 1 3.5257 3.4050 -3.2212 8 6 3.0272 5.3760 -2.5150 9 7 3.6546 6.0108 -3.4729 10 14 1.9506 6.3219 -1.3168 11 1 2.7913 6.8691 -0.2217 12 1 1.2786 7.4378 -2.0298 13 1 0.9261 5.4107 -0.7463 14 6 2.9628 4.0467 0.0463 15 6 2.6348 3.4286 1.2155 16 6 2.1650 2.1130 1.2059 17 16 1.7437 1.3211 2.7225 18 6 2.1165 2.6550 3.8877 19 1 -0.3633 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8899 23 1 1.8934 -0.5137 0.8899 24 1 2.2441 1.4944 -2.1092 25 1 3.5602 6.9722 -3.5606 26 1 3.3267 5.0635 0.0552 27 1 2.7394 3.9566 2.1518 28 1 1.5001 3.5234 3.6553 29 1 1.9050 2.3201 4.9032 30 1 3.1695 2.9247 3.8065 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238321810.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:11 Heat of formation + Delta-G solvation = -1.252025 kcal Electronic energy + Delta-G solvation = -12882.064319 eV Core-core repulsion = 10767.409465 eV Total energy + Delta-G solvation = -2114.654854 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.077 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.15519 -34.27737 -32.99967 -30.74190 -28.76124 -28.31719 -25.32813 -23.20237 -20.90488 -20.24214 -17.21343 -16.63495 -15.35667 -14.86042 -14.24603 -13.90064 -13.42280 -13.23355 -13.03683 -12.68260 -12.63464 -12.31277 -11.78643 -11.41388 -11.33415 -10.87813 -10.79576 -10.42477 -10.42107 -10.16874 -9.67172 -9.53245 -9.14888 -8.41409 -7.76193 -7.04494 -6.69940 -4.50122 2.39723 2.41809 2.61933 3.04303 3.16001 3.22152 3.26556 3.91566 4.35297 5.26990 5.38977 5.42504 5.53766 5.59161 5.84436 5.94642 5.99919 6.15996 6.31485 6.39087 6.46481 6.62669 6.73643 6.84645 7.05510 7.30331 7.39667 7.58307 7.78101 8.00062 8.25753 8.56345 8.70949 9.97320 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.032103 B = 0.010009 C = 0.008369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.971808 B = 2796.924826 C = 3345.025918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.083 4.083 3 C -0.020 4.020 4 C -0.197 4.197 5 C 0.097 3.903 6 C -0.439 4.439 7 H 0.092 0.908 8 C 0.084 3.916 9 N -0.803 5.803 10 Si 0.912 3.088 11 H -0.270 1.270 12 H -0.290 1.290 13 H -0.243 1.243 14 C -0.230 4.230 15 C -0.076 4.076 16 C -0.213 4.213 17 S -0.156 6.156 18 C -0.141 4.141 19 H 0.060 0.940 20 H 0.053 0.947 21 H 0.047 0.953 22 H 0.063 0.937 23 H 0.066 0.934 24 H 0.104 0.896 25 H 0.286 0.714 26 H 0.102 0.898 27 H 0.098 0.902 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.913 -4.281 8.170 10.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.120 4.120 3 C -0.024 4.024 4 C -0.218 4.218 5 C 0.093 3.907 6 C -0.468 4.468 7 H 0.110 0.890 8 C -0.136 4.136 9 N -0.427 5.427 10 Si 0.739 3.261 11 H -0.197 1.197 12 H -0.217 1.217 13 H -0.167 1.167 14 C -0.251 4.251 15 C -0.098 4.098 16 C -0.325 4.325 17 S 0.081 5.919 18 C -0.310 4.310 19 H 0.079 0.921 20 H 0.072 0.928 21 H 0.066 0.934 22 H 0.082 0.918 23 H 0.085 0.915 24 H 0.122 0.878 25 H 0.097 0.903 26 H 0.119 0.881 27 H 0.116 0.884 28 H 0.094 0.906 29 H 0.108 0.892 30 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.252 -5.177 8.303 10.668 hybrid contribution 0.231 2.018 0.090 2.033 sum -4.021 -3.159 8.393 9.828 Atomic orbital electron populations 1.21689 0.95335 1.00539 1.02400 1.20486 0.95941 0.94043 1.01557 1.18870 0.97639 0.94080 0.91836 1.20584 1.08584 0.97014 0.95579 1.17763 0.88286 0.92108 0.92588 1.19474 1.36330 0.92098 0.98856 0.88958 1.26198 0.93965 0.97996 0.95457 1.69738 1.32343 1.10967 1.29617 0.86293 0.81522 0.78721 0.79612 1.19660 1.21707 1.16654 1.20664 1.11536 1.00283 0.92603 1.20412 0.98795 0.93308 0.97330 1.20692 1.19859 0.97989 0.93940 1.84816 1.85412 1.22234 0.99459 1.23483 1.04773 1.01510 1.01230 0.92116 0.92824 0.93423 0.91847 0.91540 0.87760 0.90314 0.88054 0.88426 0.90578 0.89181 0.90522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.89 37.16 0.37 -1.89 16 2 C -0.08 -1.45 5.51 -27.88 -0.15 -1.61 16 3 C -0.02 -0.43 5.12 -104.79 -0.54 -0.96 16 4 C -0.20 -4.58 9.35 -39.27 -0.37 -4.95 16 5 C 0.10 2.44 5.10 -106.79 -0.54 1.90 16 6 C -0.44 -11.74 9.54 -37.91 -0.36 -12.10 16 7 H 0.09 2.57 8.06 -52.48 -0.42 2.14 16 8 C 0.08 2.16 5.40 -17.34 -0.09 2.07 16 9 N -0.80 -21.10 13.93 55.54 0.77 -20.32 16 10 Si 0.91 20.67 24.51 -169.99 -4.17 16.50 16 11 H -0.27 -5.94 6.70 56.52 0.38 -5.56 16 12 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 13 H -0.24 -5.71 6.87 56.52 0.39 -5.32 16 14 C -0.23 -5.55 7.11 -39.27 -0.28 -5.83 16 15 C -0.08 -1.67 9.11 -39.75 -0.36 -2.03 16 16 C -0.21 -4.52 6.15 -38.50 -0.24 -4.75 16 17 S -0.16 -2.74 20.59 -107.50 -2.21 -4.95 16 18 C -0.14 -2.02 8.97 101.05 0.91 -1.12 16 19 H 0.06 1.00 7.72 -51.93 -0.40 0.60 16 20 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 21 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.06 1.04 8.04 -51.93 -0.42 0.63 16 23 H 0.07 1.14 7.00 -51.93 -0.36 0.78 16 24 H 0.10 2.30 8.05 -52.49 -0.42 1.87 16 25 H 0.29 6.80 8.30 -40.82 -0.34 6.46 16 26 H 0.10 2.43 4.73 -52.49 -0.25 2.18 16 27 H 0.10 1.89 5.45 -52.49 -0.29 1.60 16 28 H 0.08 1.09 7.52 -51.92 -0.39 0.70 16 29 H 0.09 1.05 8.14 -51.91 -0.42 0.63 16 30 H 0.08 1.09 7.53 -51.92 -0.39 0.70 16 LS Contribution 257.79 15.07 3.88 3.88 Total: -1.00 -26.86 257.79 -7.16 -34.03 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -3.78 Total: 2.14 kcal Atomic # 6 Polarization: -29.62 SS G_CDS: -1.66 Total: -31.28 kcal Atomic # 7 Polarization: -21.10 SS G_CDS: 0.77 Total: -20.32 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.17 Total: 16.50 kcal Atomic # 16 Polarization: -2.74 SS G_CDS: -2.21 Total: -4.95 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -26.86 -7.16 -34.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238321810.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.773 kcal (2) G-P(sol) polarization free energy of solvation -26.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds