Wall clock time and date at job start Mon Mar 30 2020 02:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32911 * 122.14691 * 2 1 4 4 S 1.75729 * 109.58580 * 180.02562 * 3 2 1 5 5 C 1.75840 * 91.07863 * 0.02562 * 4 3 2 6 6 C 1.34630 * 109.96255 * 359.97438 * 5 4 3 7 7 C 1.52275 * 122.82499 * 180.02562 * 6 5 4 8 8 C 1.52986 * 108.79663 * 17.47716 * 7 6 5 9 9 C 1.53158 * 109.29182 * 308.79328 * 8 7 6 10 10 H 1.09002 * 109.55565 * 310.72440 * 9 8 7 11 11 C 1.50695 * 109.55185 * 190.51391 * 9 8 7 12 12 H 1.07999 * 120.00473 * 0.02562 * 11 9 8 13 13 C 1.37885 * 119.99792 * 180.02562 * 11 9 8 14 14 N 1.31515 * 119.99877 * 0.02562 * 13 11 9 15 15 Si 1.86791 * 119.99963 * 180.02562 * 13 11 9 16 16 H 1.48509 * 109.47156 * 60.00145 * 15 13 11 17 17 H 1.48499 * 109.47181 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47613 * 299.99923 * 15 13 11 19 19 C 1.51408 * 125.24731 * 180.02562 * 5 4 3 20 20 H 1.08996 * 109.47175 * 89.97853 * 1 2 3 21 21 H 1.09003 * 109.46724 * 209.97247 * 1 2 3 22 22 H 1.08997 * 109.46841 * 329.97419 * 1 2 3 23 23 H 1.08002 * 125.21009 * 0.02562 * 3 2 1 24 24 H 1.09003 * 109.58368 * 137.26821 * 7 6 5 25 25 H 1.09002 * 109.58373 * 257.54098 * 7 6 5 26 26 H 1.08998 * 109.50035 * 68.74571 * 8 7 6 27 27 H 1.09005 * 109.49770 * 188.85013 * 8 7 6 28 28 H 0.97003 * 120.00242 * 180.02562 * 14 13 11 29 29 H 1.08999 * 109.59448 * 76.47442 * 19 5 4 30 30 H 1.08996 * 109.72655 * 316.08146 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2142 1.1253 0.0000 4 16 3.9294 0.7432 -0.0007 5 6 3.5794 -0.9800 -0.0018 6 6 2.2478 -1.1786 -0.0010 7 6 1.6201 -2.5659 -0.0010 8 6 2.6758 -3.5846 0.4329 9 6 3.9396 -3.3943 -0.4111 10 1 3.6707 -3.3537 -1.4666 11 6 4.8822 -4.5461 -0.1744 12 1 4.6085 -5.3362 0.5091 13 6 6.0940 -4.5911 -0.8307 14 7 6.4274 -3.6287 -1.6626 15 14 7.2621 -6.0191 -0.5380 16 1 6.5973 -7.2896 -0.9245 17 1 8.4867 -5.8327 -1.3569 18 1 7.6305 -6.0706 0.8997 19 6 4.6172 -2.0825 -0.0023 20 1 -0.3633 0.0004 -1.0276 21 1 -0.3633 -0.8903 0.5134 22 1 -0.3633 0.8897 0.5142 23 1 1.7984 2.1221 0.0004 24 1 0.7827 -2.5881 0.6964 25 1 1.2670 -2.8071 -1.0037 26 1 2.9151 -3.4346 1.4857 27 1 2.2894 -4.5934 0.2872 28 1 7.2798 -3.6605 -2.1246 29 1 5.0425 -2.1846 0.9961 30 1 5.4076 -1.8434 -0.7137 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259556667.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:30 Heat of formation + Delta-G solvation = 3.320389 kcal Electronic energy + Delta-G solvation = -13020.731556 eV Core-core repulsion = 10906.274976 eV Total energy + Delta-G solvation = -2114.456579 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.077 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.66754 -35.27579 -32.29626 -30.21768 -28.89629 -27.28639 -24.83932 -22.07867 -21.41733 -19.16422 -17.37201 -16.47248 -16.04592 -14.60254 -14.07151 -14.00160 -13.38854 -12.94051 -12.68663 -12.61120 -11.87373 -11.79798 -11.71294 -11.41876 -10.91266 -10.85035 -10.55002 -10.46648 -10.32114 -10.24558 -9.52299 -9.06318 -8.81952 -8.42335 -7.72477 -7.63255 -6.02709 -4.08333 1.66152 2.27971 2.65848 3.24436 3.31227 3.36135 3.38450 4.41777 5.27953 5.31562 5.39266 5.67777 5.78671 5.84743 5.88234 6.02320 6.10508 6.29666 6.34964 6.64548 6.65927 6.77247 6.95240 6.99865 7.09445 7.18950 7.43216 7.68627 7.89382 8.02758 8.39951 8.95369 9.56554 11.04212 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.044544 B = 0.008325 C = 0.007263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.443523 B = 3362.548672 C = 3853.984497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.088 4.088 3 C -0.247 4.247 4 S 0.050 5.950 5 C -0.125 4.125 6 C -0.132 4.132 7 C -0.049 4.049 8 C -0.111 4.111 9 C 0.057 3.943 10 H 0.030 0.970 11 C -0.515 4.515 12 H 0.057 0.943 13 C 0.062 3.938 14 N -0.890 5.890 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C -0.044 4.044 20 H 0.065 0.935 21 H 0.066 0.934 22 H 0.058 0.942 23 H 0.152 0.848 24 H 0.058 0.942 25 H 0.065 0.935 26 H 0.049 0.951 27 H 0.055 0.945 28 H 0.262 0.738 29 H 0.060 0.940 30 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.064 6.598 2.895 10.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.101 4.101 3 C -0.381 4.381 4 S 0.317 5.683 5 C -0.243 4.243 6 C -0.143 4.143 7 C -0.089 4.089 8 C -0.149 4.149 9 C 0.037 3.963 10 H 0.048 0.952 11 C -0.554 4.554 12 H 0.076 0.924 13 C -0.140 4.140 14 N -0.529 5.529 15 Si 0.720 3.280 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.084 4.084 20 H 0.083 0.917 21 H 0.084 0.916 22 H 0.077 0.923 23 H 0.170 0.830 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.557 7.603 2.774 10.416 hybrid contribution -0.501 -1.292 0.079 1.388 sum -7.058 6.311 2.853 9.889 Atomic orbital electron populations 1.20505 0.90797 1.02055 1.01788 1.18801 0.96748 0.92057 1.02475 1.24907 0.96148 1.01369 1.15706 1.84044 1.06295 1.02993 1.74987 1.25686 0.98662 0.96178 1.03725 1.19498 0.92094 0.95491 1.07180 1.20518 0.97440 0.90323 1.00606 1.21668 0.96534 0.96736 0.99972 1.18680 0.90746 0.91702 0.95144 0.95158 1.21174 1.01857 1.06627 1.25717 0.92434 1.25005 0.98051 0.96029 0.94889 1.69878 1.22692 1.32333 1.27988 0.86659 0.80269 0.82880 0.78212 1.20243 1.21305 1.20262 1.20725 0.95084 0.90963 1.01615 0.91664 0.91557 0.92308 0.83007 0.92383 0.91662 0.93258 0.92666 0.92828 0.92177 0.88184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.19 9.84 36.01 0.35 -0.83 16 2 C -0.09 -1.47 5.80 -106.10 -0.61 -2.09 16 3 C -0.25 -4.00 10.93 28.89 0.32 -3.68 16 4 S 0.05 0.90 23.31 -107.50 -2.51 -1.61 16 5 C -0.13 -2.64 6.35 -35.24 -0.22 -2.87 16 6 C -0.13 -2.56 5.77 -104.76 -0.60 -3.16 16 7 C -0.05 -0.90 5.58 -27.11 -0.15 -1.05 16 8 C -0.11 -2.32 5.14 -26.66 -0.14 -2.46 16 9 C 0.06 1.42 2.09 -91.59 -0.19 1.23 16 10 H 0.03 0.82 8.11 -51.93 -0.42 0.40 16 11 C -0.52 -13.91 8.53 -34.44 -0.29 -14.20 16 12 H 0.06 1.52 7.75 -52.49 -0.41 1.12 16 13 C 0.06 1.69 5.31 -17.82 -0.09 1.60 16 14 N -0.89 -25.17 11.51 55.43 0.64 -24.53 16 15 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 C -0.04 -1.06 5.17 -27.43 -0.14 -1.20 16 20 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 21 H 0.07 0.81 6.83 -51.93 -0.35 0.46 16 22 H 0.06 0.65 8.11 -51.93 -0.42 0.23 16 23 H 0.15 2.02 8.06 -52.49 -0.42 1.59 16 24 H 0.06 0.91 7.12 -51.93 -0.37 0.54 16 25 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.05 1.02 8.10 -51.93 -0.42 0.60 16 27 H 0.05 1.10 8.11 -51.93 -0.42 0.68 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.06 1.46 8.11 -51.93 -0.42 1.03 16 30 H 0.10 2.64 6.48 -51.93 -0.34 2.30 16 LS Contribution 257.56 15.07 3.88 3.88 Total: -1.00 -27.87 257.56 -8.77 -36.64 By element: Atomic # 1 Polarization: 2.32 SS G_CDS: -3.98 Total: -1.66 kcal Atomic # 6 Polarization: -26.94 SS G_CDS: -1.78 Total: -28.72 kcal Atomic # 7 Polarization: -25.17 SS G_CDS: 0.64 Total: -24.53 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.51 Total: -1.61 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -27.87 -8.77 -36.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259556667.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.959 kcal (2) G-P(sol) polarization free energy of solvation -27.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds