Wall clock time and date at job start Mon Mar 30 2020 02:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32911 * 122.14691 * 2 1 4 4 S 1.75729 * 109.58580 * 180.02562 * 3 2 1 5 5 C 1.75840 * 91.07863 * 0.02562 * 4 3 2 6 6 C 1.34630 * 109.96255 * 359.97438 * 5 4 3 7 7 C 1.52275 * 122.82499 * 180.02562 * 6 5 4 8 8 C 1.52986 * 108.79663 * 17.47716 * 7 6 5 9 9 C 1.53158 * 109.29182 * 308.79328 * 8 7 6 10 10 H 1.09002 * 109.55565 * 310.72440 * 9 8 7 11 11 C 1.50695 * 109.55185 * 190.51391 * 9 8 7 12 12 H 1.07999 * 120.00473 * 0.02562 * 11 9 8 13 13 C 1.37885 * 119.99792 * 180.02562 * 11 9 8 14 14 N 1.31515 * 119.99877 * 0.02562 * 13 11 9 15 15 Si 1.86791 * 119.99963 * 180.02562 * 13 11 9 16 16 H 1.48509 * 109.47156 * 60.00145 * 15 13 11 17 17 H 1.48499 * 109.47181 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47613 * 299.99923 * 15 13 11 19 19 C 1.51408 * 125.24731 * 180.02562 * 5 4 3 20 20 H 1.08996 * 109.47175 * 89.97853 * 1 2 3 21 21 H 1.09003 * 109.46724 * 209.97247 * 1 2 3 22 22 H 1.08997 * 109.46841 * 329.97419 * 1 2 3 23 23 H 1.08002 * 125.21009 * 0.02562 * 3 2 1 24 24 H 1.09003 * 109.58368 * 137.26821 * 7 6 5 25 25 H 1.09002 * 109.58373 * 257.54098 * 7 6 5 26 26 H 1.08998 * 109.50035 * 68.74571 * 8 7 6 27 27 H 1.09005 * 109.49770 * 188.85013 * 8 7 6 28 28 H 0.97003 * 120.00242 * 180.02562 * 14 13 11 29 29 H 1.08999 * 109.59448 * 76.47442 * 19 5 4 30 30 H 1.08996 * 109.72655 * 316.08146 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2142 1.1253 0.0000 4 16 3.9294 0.7432 -0.0007 5 6 3.5794 -0.9800 -0.0018 6 6 2.2478 -1.1786 -0.0010 7 6 1.6201 -2.5659 -0.0010 8 6 2.6758 -3.5846 0.4329 9 6 3.9396 -3.3943 -0.4111 10 1 3.6707 -3.3537 -1.4666 11 6 4.8822 -4.5461 -0.1744 12 1 4.6085 -5.3362 0.5091 13 6 6.0940 -4.5911 -0.8307 14 7 6.4274 -3.6287 -1.6626 15 14 7.2621 -6.0191 -0.5380 16 1 6.5973 -7.2896 -0.9245 17 1 8.4867 -5.8327 -1.3569 18 1 7.6305 -6.0706 0.8997 19 6 4.6172 -2.0825 -0.0023 20 1 -0.3633 0.0004 -1.0276 21 1 -0.3633 -0.8903 0.5134 22 1 -0.3633 0.8897 0.5142 23 1 1.7984 2.1221 0.0004 24 1 0.7827 -2.5881 0.6964 25 1 1.2670 -2.8071 -1.0037 26 1 2.9151 -3.4346 1.4857 27 1 2.2894 -4.5934 0.2872 28 1 7.2798 -3.6605 -2.1246 29 1 5.0425 -2.1846 0.9961 30 1 5.4076 -1.8434 -0.7137 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259556667.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:30 Heat of formation + Delta-G solvation = -10.695028 kcal Electronic energy + Delta-G solvation = -13021.339310 eV Core-core repulsion = 10906.274976 eV Total energy + Delta-G solvation = -2115.064333 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.077 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.16728 -36.94485 -34.22722 -31.72488 -30.58869 -28.57315 -26.75041 -23.71632 -23.05627 -20.73940 -18.95683 -18.25813 -17.74758 -16.54810 -15.48895 -15.40316 -14.88048 -14.56451 -14.44309 -13.97082 -13.40371 -13.33474 -13.25486 -12.88582 -12.74308 -12.49695 -12.25494 -12.09978 -12.00271 -11.73213 -11.35144 -10.88379 -10.74229 -10.49809 -9.18712 -9.07838 -8.11284 -6.25127 0.23227 0.85247 1.25709 1.41911 1.43222 1.50836 1.84718 2.42709 3.17069 4.00291 4.08178 4.35520 4.40377 4.47202 4.66847 4.69155 4.83782 4.88362 4.94622 5.03264 5.10841 5.17978 5.26503 5.30031 5.54523 5.58614 5.75103 5.81669 5.93603 6.02457 6.34541 6.86321 7.43481 8.94168 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.044544 B = 0.008325 C = 0.007263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.443523 B = 3362.548672 C = 3853.984497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.101 4.101 3 C -0.226 4.226 4 S 0.045 5.955 5 C -0.179 4.179 6 C -0.125 4.125 7 C -0.046 4.046 8 C -0.105 4.105 9 C 0.054 3.946 10 H -0.005 1.005 11 C -0.536 4.536 12 H 0.058 0.942 13 C 0.012 3.988 14 N -0.919 5.919 15 Si 0.955 3.045 16 H -0.269 1.269 17 H -0.285 1.285 18 H -0.271 1.271 19 C -0.029 4.029 20 H 0.076 0.924 21 H 0.074 0.926 22 H 0.082 0.918 23 H 0.190 0.810 24 H 0.094 0.906 25 H 0.070 0.930 26 H 0.047 0.953 27 H 0.060 0.940 28 H 0.261 0.739 29 H 0.041 0.959 30 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.084 7.276 3.582 12.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.113 4.113 3 C -0.360 4.360 4 S 0.312 5.688 5 C -0.295 4.295 6 C -0.136 4.136 7 C -0.085 4.085 8 C -0.142 4.142 9 C 0.034 3.966 10 H 0.014 0.986 11 C -0.574 4.574 12 H 0.076 0.924 13 C -0.187 4.187 14 N -0.559 5.559 15 Si 0.781 3.219 16 H -0.194 1.194 17 H -0.211 1.211 18 H -0.196 1.196 19 C -0.069 4.069 20 H 0.095 0.905 21 H 0.092 0.908 22 H 0.101 0.899 23 H 0.207 0.793 24 H 0.112 0.888 25 H 0.089 0.911 26 H 0.066 0.934 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.584 8.272 3.469 12.415 hybrid contribution 0.080 -1.437 -0.147 1.447 sum -8.504 6.835 3.322 11.405 Atomic orbital electron populations 1.20586 0.87477 1.03722 1.03014 1.19126 0.99009 0.90824 1.02373 1.25397 0.94284 1.03053 1.13267 1.83970 1.08759 1.00867 1.75175 1.25377 0.98847 0.97152 1.08167 1.19888 0.91691 0.97092 1.04941 1.20544 0.97362 0.88869 1.01760 1.21544 0.95562 0.98155 0.98981 1.18619 0.92466 0.91745 0.93793 0.98650 1.21577 1.02678 1.07481 1.25709 0.92374 1.25803 0.99690 0.98484 0.94681 1.70036 1.23000 1.33981 1.28836 0.85651 0.78117 0.79897 0.78260 1.19415 1.21093 1.19587 1.20225 0.95046 0.92211 0.99373 0.90538 0.90756 0.89899 0.79284 0.88809 0.91130 0.93427 0.92106 0.92989 0.94010 0.91739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.87 9.84 71.24 0.70 -1.17 16 2 C -0.10 -3.05 5.80 -20.81 -0.12 -3.17 16 3 C -0.23 -6.56 10.93 66.65 0.73 -5.83 16 4 S 0.05 1.62 23.31 -56.49 -1.32 0.30 16 5 C -0.18 -7.63 6.35 25.08 0.16 -7.48 16 6 C -0.12 -4.64 5.77 -19.95 -0.12 -4.76 16 7 C -0.05 -1.60 5.58 30.35 0.17 -1.43 16 8 C -0.10 -4.36 5.14 30.64 0.16 -4.20 16 9 C 0.05 2.77 2.09 -11.42 -0.02 2.74 16 10 H 0.00 -0.27 8.11 -2.39 -0.02 -0.29 16 11 C -0.54 -29.85 8.53 25.60 0.22 -29.63 16 12 H 0.06 3.13 7.75 -2.91 -0.02 3.11 16 13 C 0.01 0.69 5.31 84.66 0.45 1.13 16 14 N -0.92 -54.09 11.51 21.45 0.25 -53.85 16 15 Si 0.96 43.85 29.54 68.60 2.03 45.88 16 16 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 17 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 18 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 19 C -0.03 -1.45 5.17 30.14 0.16 -1.30 16 20 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 21 H 0.07 1.45 6.83 -2.39 -0.02 1.44 16 22 H 0.08 1.37 8.11 -2.39 -0.02 1.35 16 23 H 0.19 4.05 8.06 -2.91 -0.02 4.03 16 24 H 0.09 2.59 7.12 -2.39 -0.02 2.57 16 25 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 26 H 0.05 1.96 8.10 -2.39 -0.02 1.94 16 27 H 0.06 2.41 8.11 -2.38 -0.02 2.39 16 28 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 29 H 0.04 2.15 8.11 -2.39 -0.02 2.13 16 30 H 0.06 3.64 6.48 -2.39 -0.02 3.62 16 Total: -1.00 -62.09 257.56 4.55 -57.53 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: 1.12 Total: 5.21 kcal Atomic # 6 Polarization: -57.55 SS G_CDS: 2.48 Total: -55.07 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: 0.25 Total: -53.85 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -1.32 Total: 0.30 kcal Total: -62.09 4.55 -57.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259556667.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.838 kcal (2) G-P(sol) polarization free energy of solvation -62.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds