Wall clock time and date at job start Mon Mar 30 2020 02:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08992 * 110.81028 * 2 1 4 4 O 1.43757 * 110.74270 * 123.31426 * 2 1 3 5 5 C 1.36138 * 109.29030 * 145.88859 * 4 2 1 6 6 C 1.39244 * 129.85395 * 161.42799 * 5 4 2 7 7 C 1.38151 * 120.22375 * 179.58887 * 6 5 4 8 8 F 1.35099 * 119.85270 * 180.02562 * 7 6 5 9 9 C 1.38522 * 120.29767 * 0.02562 * 7 6 5 10 10 C 1.38315 * 119.73506 * 0.18200 * 9 7 6 11 11 C 1.37754 * 120.01245 * 359.97438 * 10 9 7 12 12 C 1.51651 * 132.14566 * 179.60382 * 11 10 9 13 13 H 1.09005 * 110.97542 * 313.89953 * 12 11 10 14 14 C 1.50699 * 110.94546 * 77.58288 * 12 11 10 15 15 H 1.08005 * 120.00131 * 47.95709 * 14 12 11 16 16 C 1.37878 * 120.00235 * 227.69190 * 14 12 11 17 17 N 1.31514 * 119.99610 * 0.26651 * 16 14 12 18 18 Si 1.86798 * 120.00542 * 180.27040 * 16 14 12 19 19 H 1.48509 * 109.46890 * 59.99614 * 18 16 14 20 20 H 1.48497 * 109.47183 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47194 * 300.00102 * 18 16 14 22 22 H 1.08998 * 109.47203 * 189.20605 * 1 2 3 23 23 H 1.08994 * 109.46995 * 309.20758 * 1 2 3 24 24 H 1.09004 * 109.46814 * 69.20809 * 1 2 3 25 25 H 1.07996 * 119.89237 * 359.56387 * 6 5 4 26 26 H 1.07993 * 120.13448 * 180.15422 * 9 7 6 27 27 H 1.08004 * 119.99270 * 179.97438 * 10 9 7 28 28 H 0.97002 * 120.00320 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9173 1.0188 0.0000 4 8 2.0392 -0.7384 1.1235 5 6 3.1934 -1.3646 0.7643 6 6 4.2080 -1.8907 1.5597 7 6 5.3029 -2.4998 0.9777 8 9 6.2828 -3.0080 1.7566 9 6 5.4006 -2.5917 -0.4010 10 6 4.3979 -2.0671 -1.1963 11 6 3.3073 -1.4567 -0.6170 12 6 2.0783 -0.7943 -1.2090 13 1 2.3508 -0.1239 -2.0242 14 6 1.0817 -1.8250 -1.6732 15 1 0.8109 -2.6450 -1.0245 16 6 0.5114 -1.7183 -2.9240 17 7 0.8411 -0.7199 -3.7139 18 14 -0.7297 -2.9917 -3.4965 19 1 -1.8918 -3.0010 -2.5719 20 1 -1.1906 -2.6525 -4.8668 21 1 -0.0937 -4.3336 -3.5056 22 1 -0.3633 -1.0144 0.1644 23 1 -0.3633 0.6496 0.7963 24 1 -0.3633 0.3648 -0.9608 25 1 4.1391 -1.8219 2.6353 26 1 6.2565 -3.0706 -0.8532 27 1 4.4701 -2.1361 -2.2718 28 1 0.4396 -0.6446 -4.5938 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259781596.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:43 Heat of formation + Delta-G solvation = -60.401156 kcal Electronic energy + Delta-G solvation = -14899.450562 eV Core-core repulsion = 12216.017633 eV Total energy + Delta-G solvation = -2683.432929 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.080 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.46827 -40.30523 -36.56941 -33.74521 -31.33806 -29.90225 -29.55298 -26.18596 -24.34287 -22.20021 -20.92279 -20.22202 -17.52961 -16.61662 -16.09388 -15.64341 -15.20454 -14.79210 -14.60346 -13.97748 -13.67009 -13.09427 -12.53186 -12.40120 -12.07721 -11.73710 -11.42056 -11.06591 -10.98061 -10.84623 -10.49679 -10.40928 -9.93188 -9.49430 -9.39562 -8.70975 -8.22378 -7.39562 -6.24168 -4.28690 1.80255 1.87202 3.20986 3.26170 3.29804 3.89254 4.17514 4.33544 4.93814 5.02446 5.38212 5.45255 5.70410 5.82402 5.90031 5.98380 6.18835 6.29583 6.57039 6.66075 6.68366 6.88628 6.95801 7.10196 7.20445 7.30463 7.45415 7.67853 7.91825 8.10742 8.78780 9.33935 10.82352 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.033650 B = 0.009426 C = 0.008209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.897233 B = 2969.907658 C = 3410.262684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.070 3.930 3 H 0.061 0.939 4 O -0.308 6.308 5 C 0.125 3.875 6 C -0.189 4.189 7 C 0.102 3.898 8 F -0.148 7.148 9 C -0.189 4.189 10 C -0.050 4.050 11 C -0.134 4.134 12 C 0.046 3.954 13 H 0.093 0.907 14 C -0.498 4.498 15 H 0.059 0.941 16 C 0.071 3.929 17 N -0.889 5.889 18 Si 0.896 3.104 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.274 1.274 22 H 0.068 0.932 23 H 0.032 0.968 24 H 0.078 0.922 25 H 0.127 0.873 26 H 0.128 0.872 27 H 0.130 0.870 28 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.963 -0.128 4.518 6.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.014 3.986 3 H 0.079 0.921 4 O -0.222 6.222 5 C 0.079 3.921 6 C -0.208 4.208 7 C 0.083 3.917 8 F -0.127 7.127 9 C -0.208 4.208 10 C -0.069 4.069 11 C -0.135 4.135 12 C 0.027 3.973 13 H 0.111 0.889 14 C -0.536 4.536 15 H 0.077 0.923 16 C -0.132 4.132 17 N -0.525 5.525 18 Si 0.723 3.277 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.200 1.200 22 H 0.087 0.913 23 H 0.051 0.949 24 H 0.097 0.903 25 H 0.145 0.855 26 H 0.146 0.854 27 H 0.148 0.852 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.811 -0.045 4.555 5.939 hybrid contribution -0.441 -0.796 -0.322 0.965 sum 3.370 -0.841 4.233 5.475 Atomic orbital electron populations 1.21545 0.92432 1.02292 1.01003 1.23787 0.96022 0.93510 0.85281 0.92133 1.86732 1.33862 1.62011 1.39586 1.19236 0.86782 0.93263 0.92828 1.19808 0.93445 1.07654 0.99908 1.16985 0.86717 0.99666 0.88346 1.91431 1.60716 1.85376 1.75146 1.20875 1.01916 1.06588 0.91393 1.20120 0.91520 0.95255 0.99968 1.21801 0.97061 1.00943 0.93741 1.19362 0.88582 0.95333 0.93998 0.88881 1.20696 1.22519 1.09914 1.00435 0.92325 1.24985 0.96492 0.95462 0.96303 1.69858 1.43059 1.30159 1.09463 0.86579 0.81495 0.81780 0.77866 1.19856 1.21071 1.19978 0.91287 0.94855 0.90279 0.85478 0.85405 0.85235 0.92329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.32 8.61 37.16 0.32 -2.00 15 2 C 0.07 1.49 4.17 -25.83 -0.11 1.38 15 3 H 0.06 1.20 8.14 -51.93 -0.42 0.78 15 4 O -0.31 -6.73 10.81 -20.18 -0.22 -6.95 15 5 C 0.13 2.66 7.04 -38.96 -0.27 2.39 15 6 C -0.19 -3.56 10.04 -39.24 -0.39 -3.95 15 7 C 0.10 1.84 7.28 -39.51 -0.29 1.55 15 8 F -0.15 -2.51 17.26 2.25 0.04 -2.47 15 9 C -0.19 -3.30 10.05 -39.45 -0.40 -3.70 15 10 C -0.05 -0.99 10.03 -39.73 -0.40 -1.39 15 11 C -0.13 -2.95 5.61 -104.08 -0.58 -3.53 15 12 C 0.05 1.09 3.27 -91.56 -0.30 0.79 15 13 H 0.09 2.37 7.06 -51.93 -0.37 2.00 15 14 C -0.50 -12.73 6.40 -34.44 -0.22 -12.95 15 15 H 0.06 1.55 7.81 -52.48 -0.41 1.14 15 16 C 0.07 1.82 5.46 -17.82 -0.10 1.72 15 17 N -0.89 -23.54 12.67 55.43 0.70 -22.83 15 18 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 15 19 H -0.27 -6.06 7.11 56.52 0.40 -5.66 15 20 H -0.29 -6.34 7.11 56.52 0.40 -5.94 15 21 H -0.27 -6.20 7.11 56.52 0.40 -5.79 15 22 H 0.07 1.46 7.37 -51.93 -0.38 1.08 15 23 H 0.03 0.57 8.14 -51.93 -0.42 0.15 15 24 H 0.08 1.65 8.08 -51.93 -0.42 1.23 15 25 H 0.13 2.14 8.06 -52.49 -0.42 1.71 15 26 H 0.13 1.87 8.06 -52.49 -0.42 1.45 15 27 H 0.13 2.42 8.06 -52.48 -0.42 1.99 15 28 H 0.27 6.77 8.31 -40.82 -0.34 6.43 15 LS Contribution 248.63 15.07 3.75 3.75 Total: -1.00 -26.25 248.63 -6.32 -32.57 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: -2.83 Total: 0.57 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: -2.74 Total: -19.69 kcal Atomic # 7 Polarization: -23.54 SS G_CDS: 0.70 Total: -22.83 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: -0.22 Total: -6.95 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.04 Total: -2.47 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -26.25 -6.32 -32.57 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259781596.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.835 kcal (2) G-P(sol) polarization free energy of solvation -26.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds