Wall clock time and date at job start Mon Mar 30 2020 02:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 110.66450 * 2 1 4 4 O 1.43759 * 110.90361 * 236.68347 * 2 1 3 5 5 C 1.36141 * 109.28634 * 214.03664 * 4 2 1 6 6 C 1.39251 * 129.85212 * 198.54400 * 5 4 2 7 7 C 1.38149 * 120.22332 * 180.45548 * 6 5 4 8 8 F 1.35096 * 119.85475 * 179.97438 * 7 6 5 9 9 C 1.38519 * 120.29664 * 359.97438 * 7 6 5 10 10 C 1.38312 * 119.73891 * 359.80341 * 9 7 6 11 11 C 1.37761 * 120.01175 * 0.02562 * 10 9 7 12 12 C 1.51647 * 132.14699 * 180.35398 * 11 10 9 13 13 H 1.08999 * 110.94542 * 46.14977 * 12 11 10 14 14 C 1.50702 * 110.94439 * 282.46079 * 12 11 10 15 15 H 1.07999 * 120.00401 * 252.83551 * 14 12 11 16 16 C 1.37881 * 119.99693 * 72.82862 * 14 12 11 17 17 N 1.31511 * 120.00497 * 0.02562 * 16 14 12 18 18 Si 1.86805 * 119.99716 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47325 * 0.02562 * 18 16 14 20 20 H 1.48494 * 109.47133 * 120.00413 * 18 16 14 21 21 H 1.48499 * 109.47001 * 240.00190 * 18 16 14 22 22 H 1.08997 * 109.47352 * 289.11548 * 1 2 3 23 23 H 1.08999 * 109.47112 * 49.11792 * 1 2 3 24 24 H 1.09004 * 109.46832 * 169.11746 * 1 2 3 25 25 H 1.07995 * 119.88813 * 0.43881 * 6 5 4 26 26 H 1.07997 * 120.13003 * 179.77814 * 9 7 6 27 27 H 1.08001 * 119.99473 * 180.02562 * 10 9 7 28 28 H 0.96998 * 120.00441 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9146 1.0198 0.0000 4 8 2.0429 -0.7376 -1.1223 5 6 3.1981 -1.3607 -0.7607 6 6 4.2153 -1.8850 -1.5542 7 6 5.3103 -2.4917 -0.9700 8 9 6.2926 -2.9983 -1.7469 9 6 5.4058 -2.5829 0.4089 10 6 4.4008 -2.0598 1.2023 11 6 3.3100 -1.4515 0.6208 12 6 2.0784 -0.7918 1.2104 13 1 2.3485 -0.1205 2.0255 14 6 1.0835 -1.8247 1.6733 15 1 0.1738 -1.9870 1.1142 16 6 1.3346 -2.5627 2.8106 17 7 2.4420 -2.3649 3.4917 18 14 0.1016 -3.8436 3.3840 19 1 -1.0528 -3.8723 2.4502 20 1 0.7506 -5.1789 3.4093 21 1 -0.3730 -3.4980 4.7480 22 1 -0.3634 0.3365 0.9710 23 1 -0.3633 0.6726 -0.7770 24 1 -0.3633 -1.0092 -0.1940 25 1 4.1477 -1.8174 -2.6299 26 1 6.2613 -3.0609 0.8627 27 1 4.4712 -2.1283 2.2778 28 1 2.6185 -2.8839 4.2920 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259781602.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:46 Heat of formation + Delta-G solvation = -56.286455 kcal Electronic energy + Delta-G solvation = -15044.819488 eV Core-core repulsion = 12361.564985 eV Total energy + Delta-G solvation = -2683.254502 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.080 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.31371 -40.24037 -36.42006 -33.73584 -31.40571 -29.78932 -29.42423 -26.13976 -24.36780 -22.02239 -20.82560 -20.23699 -17.38449 -16.61213 -16.04915 -15.55569 -15.06252 -14.69546 -14.47848 -13.91174 -13.57219 -12.93993 -12.57169 -12.38524 -12.09012 -11.47175 -11.44911 -11.20865 -11.01621 -10.80190 -10.43442 -10.34837 -10.02121 -9.44262 -9.27864 -8.64984 -7.98386 -7.23379 -6.21774 -4.27256 2.01116 2.09245 3.20168 3.29252 3.32246 3.94033 4.26837 4.47973 5.08663 5.12988 5.55564 5.62153 5.75659 5.78159 5.86490 5.97991 6.23058 6.35770 6.47301 6.57121 6.83600 6.88741 7.02399 7.17017 7.24597 7.45092 7.61639 7.74868 7.98618 8.10281 8.74797 9.37776 10.85442 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.026478 B = 0.011583 C = 0.008992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.238938 B = 2416.681747 C = 3113.213712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.073 3.927 3 H 0.064 0.936 4 O -0.308 6.308 5 C 0.115 3.885 6 C -0.192 4.192 7 C 0.096 3.904 8 F -0.151 7.151 9 C -0.194 4.194 10 C -0.035 4.035 11 C -0.115 4.115 12 C 0.059 3.941 13 H 0.060 0.940 14 C -0.510 4.510 15 H 0.073 0.927 16 C 0.067 3.933 17 N -0.882 5.882 18 Si 0.896 3.104 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.282 1.282 22 H 0.078 0.922 23 H 0.039 0.961 24 H 0.071 0.929 25 H 0.124 0.876 26 H 0.124 0.876 27 H 0.150 0.850 28 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.528 2.332 -4.041 4.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.018 3.982 3 H 0.082 0.918 4 O -0.222 6.222 5 C 0.069 3.931 6 C -0.211 4.211 7 C 0.077 3.923 8 F -0.130 7.130 9 C -0.213 4.213 10 C -0.053 4.053 11 C -0.117 4.117 12 C 0.040 3.960 13 H 0.078 0.922 14 C -0.548 4.548 15 H 0.091 0.909 16 C -0.136 4.136 17 N -0.519 5.519 18 Si 0.723 3.277 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.208 1.208 22 H 0.097 0.903 23 H 0.059 0.941 24 H 0.090 0.910 25 H 0.142 0.858 26 H 0.142 0.858 27 H 0.167 0.833 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.516 2.266 -4.111 4.933 hybrid contribution -0.317 -0.980 0.321 1.079 sum 1.198 1.286 -3.790 4.178 Atomic orbital electron populations 1.21741 0.92895 1.02501 1.01434 1.23501 0.95581 0.93843 0.85313 0.91811 1.86701 1.34292 1.62420 1.38811 1.19240 0.86588 0.94131 0.93145 1.19710 0.93613 1.08248 0.99575 1.17011 0.86710 1.00126 0.88423 1.91412 1.60674 1.85544 1.75348 1.20998 1.02147 1.06838 0.91315 1.20571 0.90397 0.93004 1.01355 1.21616 0.96369 1.01008 0.92663 1.19132 0.89643 0.94618 0.92600 0.92207 1.21171 1.04266 1.20067 1.09248 0.90867 1.24992 0.95486 0.96942 0.96162 1.69871 1.24359 1.40499 1.17212 0.86462 0.81308 0.81307 0.78591 1.19589 1.20891 1.20818 0.90342 0.94145 0.91022 0.85818 0.85781 0.83277 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 8.47 37.16 0.31 -2.01 15 2 C 0.07 1.49 4.15 -25.84 -0.11 1.38 15 3 H 0.06 1.17 8.14 -51.93 -0.42 0.75 15 4 O -0.31 -6.75 10.81 -20.19 -0.22 -6.97 15 5 C 0.11 2.55 7.04 -38.96 -0.27 2.28 15 6 C -0.19 -3.87 10.04 -39.24 -0.39 -4.26 15 7 C 0.10 1.90 7.28 -39.51 -0.29 1.61 15 8 F -0.15 -2.79 17.26 2.25 0.04 -2.75 15 9 C -0.19 -3.84 10.04 -39.45 -0.40 -4.23 15 10 C -0.04 -0.78 9.51 -39.73 -0.38 -1.16 15 11 C -0.11 -2.69 5.42 -104.08 -0.56 -3.25 15 12 C 0.06 1.38 2.78 -91.57 -0.25 1.13 15 13 H 0.06 1.48 8.13 -51.93 -0.42 1.06 15 14 C -0.51 -12.95 7.80 -34.44 -0.27 -13.22 15 15 H 0.07 1.83 5.43 -52.49 -0.29 1.55 15 16 C 0.07 1.73 5.40 -17.82 -0.10 1.64 15 17 N -0.88 -23.11 11.25 55.43 0.62 -22.48 15 18 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 15 19 H -0.27 -6.08 7.11 56.52 0.40 -5.68 15 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 22 H 0.08 1.36 8.03 -51.93 -0.42 0.94 15 23 H 0.04 0.62 8.14 -51.93 -0.42 0.19 15 24 H 0.07 1.39 6.50 -51.93 -0.34 1.05 15 25 H 0.12 2.22 8.06 -52.49 -0.42 1.80 15 26 H 0.12 2.13 8.06 -52.49 -0.42 1.71 15 27 H 0.15 3.45 6.68 -52.49 -0.35 3.10 15 28 H 0.26 6.60 8.31 -40.82 -0.34 6.26 15 LS Contribution 243.61 15.07 3.67 3.67 Total: -1.00 -26.42 243.61 -6.25 -32.67 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: -2.64 Total: 0.71 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: -2.71 Total: -20.10 kcal Atomic # 7 Polarization: -23.11 SS G_CDS: 0.62 Total: -22.48 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: -0.22 Total: -6.97 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.04 Total: -2.75 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -26.42 -6.25 -32.67 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259781602.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.612 kcal (2) G-P(sol) polarization free energy of solvation -26.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds