Wall clock time and date at job start Mon Mar 30 2020 02:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76202 * 102.99762 * 2 1 4 4 C 1.38987 * 120.08111 * 359.97438 * 3 2 1 5 5 C 1.38065 * 119.91803 * 180.02562 * 4 3 2 6 6 C 1.38314 * 120.07980 * 0.02562 * 5 4 3 7 7 C 1.38278 * 120.16375 * 359.97438 * 6 5 4 8 8 C 1.38101 * 120.07961 * 359.97438 * 7 6 5 9 9 C 1.50703 * 120.04116 * 180.02562 * 8 7 6 10 10 H 1.08998 * 109.47363 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.46988 * 59.98137 * 9 8 7 12 12 C 1.50701 * 109.47364 * 299.98211 * 9 8 7 13 13 H 1.07996 * 119.99920 * 5.45777 * 12 9 8 14 14 C 1.37870 * 119.99943 * 185.46415 * 12 9 8 15 15 N 1.31522 * 120.00270 * 9.59274 * 14 12 9 16 16 Si 1.86802 * 120.00000 * 189.59212 * 14 12 9 17 17 H 1.48507 * 109.47134 * 84.99329 * 16 14 12 18 18 H 1.48497 * 109.47330 * 204.99213 * 16 14 12 19 19 H 1.48497 * 109.46937 * 324.99679 * 16 14 12 20 20 H 1.09002 * 109.46835 * 299.99983 * 1 2 3 21 21 H 1.09001 * 109.46870 * 60.00334 * 1 2 3 22 22 H 1.09006 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.07999 * 120.04307 * 0.02562 * 4 3 2 24 24 H 1.08000 * 119.95699 * 179.73100 * 5 4 3 25 25 H 1.08008 * 119.91724 * 179.97438 * 6 5 4 26 26 H 1.08000 * 119.96188 * 179.97438 * 7 6 5 27 27 H 1.08999 * 109.47185 * 303.25798 * 11 9 8 28 28 H 1.09002 * 109.46864 * 63.25850 * 11 9 8 29 29 H 1.08997 * 109.47023 * 183.26041 * 11 9 8 30 30 H 0.96997 * 119.99759 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1951 2.6662 -0.0005 5 6 1.5095 4.0106 -0.0011 6 6 2.8328 4.4131 -0.0016 7 6 3.8454 3.4715 -0.0011 8 6 3.5386 2.1250 0.0005 9 6 4.6429 1.0995 0.0017 10 1 4.2100 0.0993 0.0033 11 6 5.5078 1.2828 1.2505 12 6 5.4942 1.2765 -1.2292 13 1 5.3139 2.1071 -1.8956 14 6 6.5030 0.3781 -1.5048 15 7 6.6043 -0.7316 -0.8061 16 14 7.7259 0.7368 -2.8705 17 1 8.8221 1.5882 -2.3424 18 1 8.2908 -0.5397 -3.3770 19 1 7.0371 1.4471 -3.9777 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 0.1617 2.3526 -0.0005 24 1 0.7212 4.7487 -0.0059 25 1 3.0757 5.4655 -0.0024 26 1 4.8776 3.7894 -0.0019 27 1 5.8940 2.3017 1.2786 28 1 4.9054 1.0979 2.1399 29 1 6.3400 0.5795 1.2225 30 1 7.3143 -1.3635 -0.9997 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260029621.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:35 Heat of formation + Delta-G solvation = 9.968750 kcal Electronic energy + Delta-G solvation = -12895.573374 eV Core-core repulsion = 10781.405089 eV Total energy + Delta-G solvation = -2114.168285 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.077 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.60954 -34.38155 -31.49691 -30.68339 -28.49765 -28.22802 -25.06801 -22.64676 -22.11345 -19.67732 -16.94057 -16.27999 -15.34635 -14.70719 -14.44514 -13.78768 -13.62151 -13.50300 -12.86504 -12.55827 -12.24682 -12.00712 -11.60236 -11.26562 -10.89100 -10.80098 -10.69975 -10.33470 -10.19778 -9.81841 -9.24340 -9.08779 -8.93702 -8.29194 -8.01283 -6.72873 -6.00413 -4.02687 1.85083 2.06744 2.11050 3.03235 3.32599 3.38977 3.42167 4.34235 4.49854 5.31249 5.31971 5.32597 5.36107 5.47224 5.68795 5.86217 6.01506 6.18298 6.41408 6.59629 6.79840 6.82136 6.98014 7.12081 7.13093 7.24572 7.59836 7.71873 7.95580 8.00018 8.39105 8.98667 9.59438 11.07903 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.028266 B = 0.009999 C = 0.008453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.345498 B = 2799.522196 C = 3311.656121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 S -0.085 6.085 3 C -0.099 4.099 4 C -0.138 4.138 5 C -0.132 4.132 6 C -0.130 4.130 7 C -0.100 4.100 8 C -0.011 4.011 9 C 0.068 3.932 10 H 0.055 0.945 11 C -0.125 4.125 12 C -0.508 4.508 13 H 0.057 0.943 14 C 0.066 3.934 15 N -0.884 5.884 16 Si 0.889 3.111 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.275 1.275 20 H 0.074 0.926 21 H 0.075 0.925 22 H 0.099 0.901 23 H 0.112 0.888 24 H 0.112 0.888 25 H 0.113 0.887 26 H 0.126 0.874 27 H 0.030 0.970 28 H 0.014 0.986 29 H 0.069 0.931 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.402 4.901 2.405 10.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.334 4.334 2 S 0.157 5.843 3 C -0.212 4.212 4 C -0.162 4.162 5 C -0.152 4.152 6 C -0.151 4.151 7 C -0.120 4.120 8 C -0.016 4.016 9 C 0.049 3.951 10 H 0.073 0.927 11 C -0.183 4.183 12 C -0.546 4.546 13 H 0.075 0.925 14 C -0.136 4.136 15 N -0.522 5.522 16 Si 0.717 3.283 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.199 1.199 20 H 0.093 0.907 21 H 0.094 0.906 22 H 0.118 0.882 23 H 0.130 0.870 24 H 0.130 0.870 25 H 0.131 0.869 26 H 0.144 0.856 27 H 0.049 0.951 28 H 0.033 0.967 29 H 0.088 0.912 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.677 3.643 2.420 9.716 hybrid contribution -0.194 1.347 -0.811 1.584 sum -8.870 4.989 1.609 10.304 Atomic orbital electron populations 1.23753 0.99044 1.06023 1.04583 1.86092 1.01857 1.03696 1.92642 1.21709 0.96517 0.96093 1.06837 1.20973 0.97408 0.93338 1.04518 1.20752 0.96251 0.94884 1.03299 1.21095 0.92999 0.98979 1.01985 1.21045 0.99289 0.92281 0.99392 1.20429 0.92876 0.95868 0.92407 1.17975 0.89731 0.92605 0.94787 0.92726 1.21727 1.00583 1.00117 0.95888 1.21015 1.15002 1.11100 1.07520 0.92470 1.24933 0.97816 0.94549 0.96341 1.69976 1.32402 1.08744 1.41092 0.86657 0.81698 0.77655 0.82337 1.20568 1.21292 1.19950 0.90697 0.90574 0.88239 0.86967 0.87008 0.86886 0.85582 0.95058 0.96669 0.91241 0.92914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 9.15 101.05 0.92 -1.28 16 2 S -0.09 -1.63 20.49 -107.50 -2.20 -3.84 16 3 C -0.10 -2.02 6.11 -39.04 -0.24 -2.26 16 4 C -0.14 -2.39 9.36 -39.37 -0.37 -2.76 16 5 C -0.13 -2.12 10.04 -39.62 -0.40 -2.52 16 6 C -0.13 -2.20 10.04 -39.54 -0.40 -2.60 16 7 C -0.10 -2.01 8.62 -39.62 -0.34 -2.35 16 8 C -0.01 -0.24 4.76 -104.41 -0.50 -0.74 16 9 C 0.07 1.72 2.22 -92.92 -0.21 1.52 16 10 H 0.06 1.51 5.97 -51.89 -0.31 1.20 16 11 C -0.13 -3.02 8.93 37.16 0.33 -2.68 16 12 C -0.51 -13.98 8.19 -34.44 -0.28 -14.27 16 13 H 0.06 1.58 7.55 -52.49 -0.40 1.18 16 14 C 0.07 1.82 5.17 -17.82 -0.09 1.73 16 15 N -0.88 -25.43 12.16 55.43 0.67 -24.75 16 16 Si 0.89 21.37 29.55 -169.99 -5.02 16.34 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 H 0.07 0.90 7.75 -51.92 -0.40 0.50 16 21 H 0.08 0.95 7.75 -51.92 -0.40 0.55 16 22 H 0.10 1.13 8.14 -51.92 -0.42 0.71 16 23 H 0.11 1.63 5.88 -52.49 -0.31 1.33 16 24 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 25 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 26 H 0.13 2.50 7.55 -52.49 -0.40 2.10 16 27 H 0.03 0.69 7.28 -51.93 -0.38 0.32 16 28 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 1.81 6.84 -51.93 -0.36 1.45 16 30 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 263.40 15.07 3.97 3.97 Total: -1.00 -29.20 263.40 -7.92 -37.12 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -3.77 Total: -0.64 kcal Atomic # 6 Polarization: -26.65 SS G_CDS: -1.56 Total: -28.21 kcal Atomic # 7 Polarization: -25.43 SS G_CDS: 0.67 Total: -24.75 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.20 Total: -3.84 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.20 -7.92 -37.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260029621.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.090 kcal (2) G-P(sol) polarization free energy of solvation -29.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds