Wall clock time and date at job start Mon Mar 30 2020 02:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38394 * 119.83344 * 2 1 4 4 C 1.37876 * 120.19709 * 180.02562 * 3 2 1 5 5 C 1.50702 * 120.05663 * 179.97438 * 4 3 2 6 6 C 1.50692 * 109.47101 * 264.99781 * 5 4 3 7 7 H 1.08003 * 120.00036 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00362 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99567 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00465 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46905 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47370 * 119.99570 * 10 8 6 13 13 H 1.48498 * 109.46974 * 239.99839 * 10 8 6 14 14 C 1.39861 * 119.87654 * 359.97435 * 4 3 2 15 15 C 1.47183 * 120.15763 * 180.02562 * 14 4 3 16 16 O 1.21260 * 119.99896 * 180.02562 * 15 14 4 17 17 C 1.39808 * 119.68788 * 0.02562 * 14 4 3 18 18 C 1.38150 * 119.79121 * 359.74863 * 17 14 4 19 19 F 1.35096 * 119.94025 * 180.26976 * 18 17 14 20 20 H 1.08999 * 109.47015 * 90.00388 * 1 2 3 21 21 H 1.09000 * 109.46646 * 209.99541 * 1 2 3 22 22 H 1.09000 * 109.47248 * 330.00258 * 1 2 3 23 23 H 1.07992 * 119.90073 * 359.97438 * 3 2 1 24 24 H 1.08999 * 109.47282 * 25.00090 * 5 4 3 25 25 H 1.08998 * 109.46546 * 144.99934 * 5 4 3 26 26 H 0.97001 * 120.00322 * 180.02562 * 9 8 6 27 27 H 1.07994 * 119.99733 * 0.02562 * 15 14 4 28 28 H 1.07993 * 120.10646 * 179.97438 * 17 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1955 1.2005 0.0000 4 6 3.5743 1.2093 -0.0005 5 6 4.3208 2.5184 -0.0011 6 6 4.6767 2.8931 -1.4167 7 1 4.3912 2.2476 -2.2342 8 6 5.3676 4.0594 -1.6682 9 7 5.7156 4.8452 -0.6727 10 14 5.8094 4.5235 -3.4229 11 1 5.3080 3.4794 -4.3522 12 1 5.1868 5.8285 -3.7615 13 1 7.2850 4.6313 -3.5497 14 6 4.2786 0.0010 -0.0005 15 6 5.7505 0.0031 -0.0005 16 8 6.3583 -1.0462 -0.0010 17 6 3.5781 -1.2089 -0.0005 18 6 2.1966 -1.2021 0.0047 19 9 1.5166 -2.3695 0.0103 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3632 -0.8901 0.5138 22 1 -0.3634 0.8900 0.5138 23 1 1.6512 2.1333 -0.0004 24 1 3.6919 3.2955 0.4333 25 1 5.2322 2.4171 0.5880 26 1 6.2014 5.6660 -0.8496 27 1 6.2891 0.9392 -0.0001 28 1 4.1151 -2.1458 -0.0010 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260048157.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:15 Heat of formation + Delta-G solvation = -75.084942 kcal Electronic energy + Delta-G solvation = -14425.578308 eV Core-core repulsion = 11741.508642 eV Total energy + Delta-G solvation = -2684.069666 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.080 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.57940 -39.41662 -37.66153 -33.88750 -32.49120 -31.15546 -27.66618 -27.11496 -23.50883 -23.33568 -21.22081 -19.69699 -17.28588 -16.52352 -16.41575 -15.39195 -15.00343 -14.81394 -14.28078 -14.20656 -13.66866 -13.22382 -13.19261 -12.93439 -12.51988 -12.21805 -11.74275 -11.44645 -11.17242 -10.98347 -10.74915 -10.67985 -9.86140 -9.60499 -9.17025 -8.58895 -8.54752 -7.96615 -6.21866 -4.27928 0.98312 1.65481 2.85209 3.21037 3.30022 3.34273 4.09403 4.34020 4.49004 4.86602 4.97503 5.13179 5.19072 5.40414 5.60321 5.66455 5.80292 5.88811 5.97172 6.22755 6.47257 6.52118 6.64060 6.71413 7.21230 7.33132 7.44935 7.73239 7.94743 8.06829 8.77852 9.38339 10.87421 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.029070 B = 0.008451 C = 0.007303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.945141 B = 3312.334251 C = 3833.292726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.088 4.088 3 C -0.115 4.115 4 C 0.014 3.986 5 C 0.040 3.960 6 C -0.521 4.521 7 H 0.060 0.940 8 C 0.064 3.936 9 N -0.888 5.888 10 Si 0.895 3.105 11 H -0.271 1.271 12 H -0.282 1.282 13 H -0.282 1.282 14 C -0.179 4.179 15 C 0.394 3.606 16 O -0.484 6.484 17 C -0.092 4.092 18 C 0.048 3.952 19 F -0.147 7.147 20 H 0.073 0.927 21 H 0.066 0.934 22 H 0.073 0.927 23 H 0.136 0.864 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.265 0.735 27 H 0.124 0.876 28 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.010 -6.226 1.816 9.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.089 4.089 3 C -0.133 4.133 4 C 0.014 3.986 5 C 0.003 3.997 6 C -0.559 4.559 7 H 0.079 0.921 8 C -0.139 4.139 9 N -0.526 5.526 10 Si 0.723 3.277 11 H -0.196 1.196 12 H -0.208 1.208 13 H -0.207 1.207 14 C -0.180 4.180 15 C 0.255 3.745 16 O -0.359 6.359 17 C -0.111 4.111 18 C 0.029 3.971 19 F -0.126 7.126 20 H 0.092 0.908 21 H 0.085 0.915 22 H 0.092 0.908 23 H 0.153 0.847 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.074 0.926 27 H 0.140 0.860 28 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.622 -6.660 1.859 9.574 hybrid contribution 0.001 0.230 -1.008 1.034 sum -6.620 -6.430 0.852 9.268 Atomic orbital electron populations 1.20755 0.90586 1.03035 1.02717 1.20137 0.96699 0.92114 0.99916 1.20888 0.93924 0.96703 1.01826 1.21059 0.93550 0.96590 0.87426 1.18530 0.95458 0.87281 0.98435 1.21024 1.36780 1.06649 0.91440 0.92148 1.24985 0.95431 0.96083 0.97406 1.69945 1.38802 1.12954 1.30927 0.86469 0.78325 0.78552 0.84390 1.19572 1.20801 1.20743 1.20609 0.96993 0.92594 1.07842 1.24382 0.88258 0.93651 0.68221 1.90423 1.71402 1.37541 1.36573 1.21266 0.91958 0.99350 0.98485 1.17250 0.89711 0.80882 1.09236 1.91423 1.80112 1.46421 1.94654 0.90787 0.91468 0.90846 0.84666 0.94337 0.94429 0.92573 0.85954 0.84643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 9.83 36.01 0.35 -1.04 15 2 C -0.09 -1.39 5.89 -104.43 -0.62 -2.00 15 3 C -0.12 -2.00 9.31 -39.66 -0.37 -2.37 15 4 C 0.01 0.28 5.11 -104.15 -0.53 -0.25 15 5 C 0.04 0.89 4.48 -29.04 -0.13 0.76 15 6 C -0.52 -13.13 9.09 -34.44 -0.31 -13.44 15 7 H 0.06 1.54 7.74 -52.48 -0.41 1.13 15 8 C 0.06 1.65 5.46 -17.82 -0.10 1.56 15 9 N -0.89 -24.13 13.29 55.43 0.74 -23.39 15 10 Si 0.90 20.22 29.54 -169.99 -5.02 15.19 15 11 H -0.27 -6.10 7.11 56.52 0.40 -5.69 15 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 13 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 14 C -0.18 -3.40 5.87 -105.07 -0.62 -4.02 15 15 C 0.39 7.55 10.88 34.36 0.37 7.93 15 16 O -0.48 -9.98 17.17 5.57 0.10 -9.88 15 17 C -0.09 -1.62 9.58 -39.03 -0.37 -2.00 15 18 C 0.05 0.81 7.23 -39.48 -0.29 0.52 15 19 F -0.15 -2.38 16.45 2.25 0.04 -2.34 15 20 H 0.07 0.84 8.14 -51.93 -0.42 0.42 15 21 H 0.07 0.77 7.62 -51.93 -0.40 0.38 15 22 H 0.07 0.78 8.08 -51.93 -0.42 0.36 15 23 H 0.14 2.16 8.06 -52.49 -0.42 1.73 15 24 H 0.04 0.91 8.05 -51.93 -0.42 0.49 15 25 H 0.04 0.86 6.61 -51.93 -0.34 0.52 15 26 H 0.26 6.82 8.31 -40.82 -0.34 6.48 15 27 H 0.12 2.32 6.47 -52.49 -0.34 1.98 15 28 H 0.14 2.29 7.65 -52.49 -0.40 1.89 15 LS Contribution 257.22 15.07 3.88 3.88 Total: -1.00 -27.50 257.22 -5.58 -33.08 By element: Atomic # 1 Polarization: 0.52 SS G_CDS: -2.70 Total: -2.19 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: -2.61 Total: -14.36 kcal Atomic # 7 Polarization: -24.13 SS G_CDS: 0.74 Total: -23.39 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.10 Total: -9.88 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.04 Total: -2.34 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -27.50 -5.58 -33.08 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260048157.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.004 kcal (2) G-P(sol) polarization free energy of solvation -27.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds