Wall clock time and date at job start Mon Mar 30 2020 02:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38394 * 119.83344 * 2 1 4 4 C 1.37876 * 120.19709 * 180.02562 * 3 2 1 5 5 C 1.50702 * 120.05663 * 179.97438 * 4 3 2 6 6 C 1.50692 * 109.47101 * 264.99781 * 5 4 3 7 7 H 1.08003 * 120.00036 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00362 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99567 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00465 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46905 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47370 * 119.99570 * 10 8 6 13 13 H 1.48498 * 109.46974 * 239.99839 * 10 8 6 14 14 C 1.39861 * 119.87654 * 359.97435 * 4 3 2 15 15 C 1.47183 * 120.15763 * 180.02562 * 14 4 3 16 16 O 1.21260 * 119.99896 * 180.02562 * 15 14 4 17 17 C 1.39808 * 119.68788 * 0.02562 * 14 4 3 18 18 C 1.38150 * 119.79121 * 359.74863 * 17 14 4 19 19 F 1.35096 * 119.94025 * 180.26976 * 18 17 14 20 20 H 1.08999 * 109.47015 * 90.00388 * 1 2 3 21 21 H 1.09000 * 109.46646 * 209.99541 * 1 2 3 22 22 H 1.09000 * 109.47248 * 330.00258 * 1 2 3 23 23 H 1.07992 * 119.90073 * 359.97438 * 3 2 1 24 24 H 1.08999 * 109.47282 * 25.00090 * 5 4 3 25 25 H 1.08998 * 109.46546 * 144.99934 * 5 4 3 26 26 H 0.97001 * 120.00322 * 180.02562 * 9 8 6 27 27 H 1.07994 * 119.99733 * 0.02562 * 15 14 4 28 28 H 1.07993 * 120.10646 * 179.97438 * 17 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1955 1.2005 0.0000 4 6 3.5743 1.2093 -0.0005 5 6 4.3208 2.5184 -0.0011 6 6 4.6767 2.8931 -1.4167 7 1 4.3912 2.2476 -2.2342 8 6 5.3676 4.0594 -1.6682 9 7 5.7156 4.8452 -0.6727 10 14 5.8094 4.5235 -3.4229 11 1 5.3080 3.4794 -4.3522 12 1 5.1868 5.8285 -3.7615 13 1 7.2850 4.6313 -3.5497 14 6 4.2786 0.0010 -0.0005 15 6 5.7505 0.0031 -0.0005 16 8 6.3583 -1.0462 -0.0010 17 6 3.5781 -1.2089 -0.0005 18 6 2.1966 -1.2021 0.0047 19 9 1.5166 -2.3695 0.0103 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3632 -0.8901 0.5138 22 1 -0.3634 0.8900 0.5138 23 1 1.6512 2.1333 -0.0004 24 1 3.6919 3.2955 0.4333 25 1 5.2322 2.4171 0.5880 26 1 6.2014 5.6660 -0.8496 27 1 6.2891 0.9392 -0.0001 28 1 4.1151 -2.1458 -0.0010 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260048157.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:15 Heat of formation + Delta-G solvation = -88.954277 kcal Electronic energy + Delta-G solvation = -14426.179727 eV Core-core repulsion = 11741.508642 eV Total energy + Delta-G solvation = -2684.671085 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.89725 -40.89770 -39.16715 -35.62612 -33.97551 -32.75408 -29.04482 -28.72048 -25.29294 -24.69776 -22.73324 -21.14610 -18.71266 -18.48148 -17.84320 -16.74406 -16.70499 -16.27073 -15.80881 -15.67316 -15.24681 -14.60350 -14.44201 -14.33954 -14.15572 -13.52894 -13.32937 -13.01037 -12.68088 -12.51774 -12.42556 -12.27159 -11.61599 -11.46193 -10.77270 -10.53713 -9.91060 -9.43754 -8.19378 -6.30992 -0.44891 0.23542 1.37809 1.42406 1.46469 1.56316 2.40762 2.70217 3.09277 3.14184 3.48853 3.73112 3.84343 4.04225 4.20610 4.40904 4.64964 4.72616 4.76712 5.04084 5.07052 5.12052 5.17171 5.31826 5.39585 5.73599 5.75688 5.87789 6.15358 6.40228 6.81134 7.38343 8.89696 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.029070 B = 0.008451 C = 0.007303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.945141 B = 3312.334251 C = 3833.292726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.075 4.075 3 C -0.117 4.117 4 C 0.000 4.000 5 C 0.047 3.953 6 C -0.527 4.527 7 H 0.055 0.945 8 C 0.018 3.982 9 N -0.921 5.921 10 Si 0.953 3.047 11 H -0.269 1.269 12 H -0.278 1.278 13 H -0.280 1.280 14 C -0.191 4.191 15 C 0.400 3.600 16 O -0.501 6.501 17 C -0.094 4.094 18 C 0.049 3.951 19 F -0.140 7.140 20 H 0.088 0.912 21 H 0.077 0.923 22 H 0.092 0.908 23 H 0.149 0.851 24 H 0.024 0.976 25 H 0.026 0.974 26 H 0.266 0.734 27 H 0.121 0.879 28 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.536 -6.777 1.216 10.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.076 4.076 3 C -0.135 4.135 4 C -0.001 4.001 5 C 0.011 3.989 6 C -0.565 4.565 7 H 0.073 0.927 8 C -0.182 4.182 9 N -0.560 5.560 10 Si 0.779 3.221 11 H -0.193 1.193 12 H -0.204 1.204 13 H -0.206 1.206 14 C -0.192 4.192 15 C 0.262 3.738 16 O -0.378 6.378 17 C -0.113 4.113 18 C 0.030 3.970 19 F -0.119 7.119 20 H 0.107 0.893 21 H 0.096 0.904 22 H 0.111 0.889 23 H 0.167 0.833 24 H 0.042 0.958 25 H 0.044 0.956 26 H 0.075 0.925 27 H 0.137 0.863 28 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -8.159 -7.217 1.259 10.966 hybrid contribution 0.399 0.342 -0.788 0.947 sum -7.760 -6.875 0.471 10.378 Atomic orbital electron populations 1.20885 0.87545 1.04587 1.04059 1.20471 0.98781 0.90904 0.97394 1.21030 0.93014 0.98032 1.01453 1.20807 0.94545 0.95236 0.89500 1.18297 0.95088 0.88623 0.96921 1.21282 1.36256 1.06387 0.92563 0.92675 1.25692 0.95554 0.96233 1.00707 1.70034 1.39819 1.13482 1.32688 0.85571 0.77968 0.78252 0.80351 1.19287 1.20365 1.20581 1.20512 0.96612 0.92997 1.09091 1.24362 0.88679 0.93253 0.67486 1.90410 1.71769 1.37905 1.37697 1.21337 0.92627 0.99014 0.98286 1.17329 0.89451 0.81527 1.08676 1.91445 1.79837 1.46095 1.94531 0.89328 0.90405 0.88918 0.83337 0.95772 0.95588 0.92469 0.86257 0.84083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.35 9.83 71.24 0.70 -1.65 15 2 C -0.07 -2.15 5.89 -19.74 -0.12 -2.27 15 3 C -0.12 -3.86 9.31 22.22 0.21 -3.65 15 4 C 0.00 -0.01 5.11 -19.56 -0.10 -0.11 15 5 C 0.05 2.17 4.48 29.10 0.13 2.30 15 6 C -0.53 -26.64 9.09 25.60 0.23 -26.41 15 7 H 0.05 2.79 7.74 -2.91 -0.02 2.77 15 8 C 0.02 0.92 5.46 84.66 0.46 1.38 15 9 N -0.92 -50.45 13.29 21.45 0.28 -50.17 15 10 Si 0.95 41.27 29.54 68.60 2.03 43.30 15 11 H -0.27 -11.40 7.11 99.48 0.71 -10.69 15 12 H -0.28 -11.79 7.11 99.48 0.71 -11.08 15 13 H -0.28 -11.99 7.11 99.48 0.71 -11.28 15 14 C -0.19 -7.18 5.87 -20.16 -0.12 -7.29 15 15 C 0.40 15.49 10.88 70.17 0.76 16.25 15 16 O -0.50 -20.71 17.17 -2.97 -0.05 -20.76 15 17 C -0.09 -3.20 9.58 22.63 0.22 -2.98 15 18 C 0.05 1.54 7.23 22.33 0.16 1.70 15 19 F -0.14 -4.13 16.45 44.97 0.74 -3.39 15 20 H 0.09 1.64 8.14 -2.39 -0.02 1.62 15 21 H 0.08 1.47 7.62 -2.39 -0.02 1.46 15 22 H 0.09 1.59 8.08 -2.39 -0.02 1.57 15 23 H 0.15 4.43 8.06 -2.91 -0.02 4.41 15 24 H 0.02 1.15 8.05 -2.39 -0.02 1.13 15 25 H 0.03 1.23 6.61 -2.39 -0.02 1.22 15 26 H 0.27 13.82 8.31 -92.71 -0.77 13.05 15 27 H 0.12 4.67 6.47 -2.91 -0.02 4.65 15 28 H 0.14 4.61 7.65 -2.91 -0.02 4.58 15 Total: -1.00 -57.05 257.22 6.71 -50.34 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: 1.17 Total: 3.41 kcal Atomic # 6 Polarization: -25.27 SS G_CDS: 2.54 Total: -22.73 kcal Atomic # 7 Polarization: -50.45 SS G_CDS: 0.28 Total: -50.17 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.05 Total: -20.76 kcal Atomic # 9 Polarization: -4.13 SS G_CDS: 0.74 Total: -3.39 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Total: -57.05 6.71 -50.34 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260048157.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.612 kcal (2) G-P(sol) polarization free energy of solvation -57.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds