Wall clock time and date at job start Mon Mar 30 2020 02:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.81169 * 2 1 4 4 O 1.43777 * 110.74640 * 236.68865 * 2 1 3 5 5 C 1.36195 * 109.22133 * 269.41608 * 4 2 1 6 6 C 1.38829 * 111.23821 * 340.96996 * 5 4 2 7 7 C 1.37762 * 120.80241 * 180.63847 * 6 5 4 8 8 C 1.38367 * 120.01912 * 359.62078 * 7 6 5 9 9 C 1.38247 * 119.78252 * 359.97438 * 8 7 6 10 10 C 1.38143 * 120.32853 * 0.19210 * 9 8 7 11 11 F 1.35096 * 119.90431 * 180.02562 * 10 9 8 12 12 C 1.51652 * 107.04934 * 1.08746 * 6 5 4 13 13 H 1.08998 * 110.93519 * 133.53430 * 12 6 5 14 14 C 1.50701 * 110.93777 * 257.21717 * 12 6 5 15 15 H 1.07996 * 120.00200 * 118.54774 * 14 12 6 16 16 C 1.37880 * 119.99576 * 298.54126 * 14 12 6 17 17 N 1.31520 * 120.00087 * 0.02562 * 16 14 12 18 18 Si 1.86797 * 119.99608 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47401 * 60.00390 * 18 16 14 20 20 H 1.48504 * 109.47146 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47248 * 300.00236 * 18 16 14 22 22 H 1.09003 * 109.47055 * 181.86141 * 1 2 3 23 23 H 1.09007 * 109.47110 * 301.85956 * 1 2 3 24 24 H 1.08997 * 109.47754 * 61.85958 * 1 2 3 25 25 H 1.08002 * 119.99006 * 179.63638 * 7 6 5 26 26 H 1.08002 * 120.10569 * 180.02562 * 8 7 6 27 27 H 1.08011 * 119.83748 * 180.17139 * 9 8 7 28 28 H 0.96998 * 119.99058 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9173 1.0189 0.0000 4 8 2.0393 -0.7384 -1.1236 5 6 2.2104 -2.0408 -0.7639 6 6 2.2628 -2.1786 0.6165 7 6 2.4446 -3.4152 1.1957 8 6 2.5698 -4.5405 0.4002 9 6 2.5111 -4.4188 -0.9756 10 6 2.3323 -3.1796 -1.5593 11 9 2.2758 -3.0706 -2.9047 12 6 2.0782 -0.7947 1.2088 13 1 1.3543 -0.8132 2.0234 14 6 3.3949 -0.2278 1.6736 15 1 3.7773 0.6808 1.2327 16 6 4.1111 -0.8693 2.6619 17 7 3.6455 -1.9761 3.1985 18 14 5.7428 -0.1662 3.2385 19 1 5.5296 1.2003 3.7795 20 1 6.3093 -1.0365 4.3001 21 1 6.6870 -0.1037 2.0941 22 1 -0.3633 -1.0272 0.0334 23 1 -0.3634 0.5425 0.8729 24 1 -0.3634 0.4846 -0.9061 25 1 2.4893 -3.5065 2.2709 26 1 2.7119 -5.5107 0.8528 27 1 2.6059 -5.2970 -1.5973 28 1 4.1497 -2.4274 3.8934 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260719442.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:53 Heat of formation + Delta-G solvation = -57.477005 kcal Electronic energy + Delta-G solvation = -15221.849987 eV Core-core repulsion = 12538.543859 eV Total energy + Delta-G solvation = -2683.306128 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.05447 -40.18297 -36.50998 -33.57073 -31.35108 -29.83015 -28.80849 -27.11149 -23.84771 -21.84124 -21.05703 -20.28019 -17.09103 -16.35130 -16.10468 -15.51788 -15.18905 -14.63177 -14.42508 -13.92789 -13.60586 -12.86210 -12.37802 -12.14713 -11.86053 -11.67807 -11.50427 -11.16188 -10.99865 -10.74471 -10.58775 -10.33118 -10.16407 -9.56629 -9.44486 -8.65316 -7.69759 -7.24324 -6.20094 -4.29923 2.13298 2.14003 3.23039 3.27384 3.30917 4.06154 4.27001 4.56696 5.08677 5.09708 5.50182 5.64637 5.73617 5.81842 5.91493 6.11450 6.17253 6.32781 6.34272 6.53477 6.65596 6.88215 7.08841 7.24208 7.30648 7.52499 7.71582 7.76964 8.01121 8.11819 8.70068 9.35340 10.82746 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.027313 B = 0.011981 C = 0.009984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.904259 B = 2336.512909 C = 2803.845672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.071 3.929 3 H 0.106 0.894 4 O -0.302 6.302 5 C 0.056 3.944 6 C -0.077 4.077 7 C -0.059 4.059 8 C -0.143 4.143 9 C -0.149 4.149 10 C 0.050 3.950 11 F -0.154 7.154 12 C 0.061 3.939 13 H 0.055 0.945 14 C -0.512 4.512 15 H 0.065 0.935 16 C 0.067 3.933 17 N -0.881 5.881 18 Si 0.900 3.100 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.276 1.276 22 H 0.055 0.945 23 H 0.070 0.930 24 H 0.054 0.946 25 H 0.157 0.843 26 H 0.121 0.879 27 H 0.125 0.875 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.739 -1.981 -2.910 5.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.015 3.985 3 H 0.124 0.876 4 O -0.217 6.217 5 C 0.010 3.990 6 C -0.079 4.079 7 C -0.077 4.077 8 C -0.162 4.162 9 C -0.168 4.168 10 C 0.031 3.969 11 F -0.133 7.133 12 C 0.043 3.957 13 H 0.073 0.927 14 C -0.550 4.550 15 H 0.083 0.917 16 C -0.136 4.136 17 N -0.518 5.518 18 Si 0.728 3.272 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.201 1.201 22 H 0.074 0.926 23 H 0.089 0.911 24 H 0.073 0.927 25 H 0.174 0.826 26 H 0.139 0.861 27 H 0.143 0.857 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.661 -1.982 -3.021 5.144 hybrid contribution 1.050 0.257 0.147 1.091 sum -2.611 -1.725 -2.875 4.249 Atomic orbital electron populations 1.22218 0.96066 1.02266 1.01735 1.23635 0.92590 0.96782 0.85466 0.87599 1.86796 1.80266 1.15970 1.38650 1.19666 1.00743 0.84801 0.93796 1.21289 0.98126 0.97280 0.91158 1.21105 0.94540 0.89664 1.02405 1.20914 1.04075 0.98948 0.92239 1.20553 1.05798 0.94438 0.95993 1.16899 1.12388 0.91910 0.75751 1.91385 1.94900 1.96911 1.30097 1.19136 0.97680 0.86404 0.92482 0.92719 1.20962 1.04470 1.09677 1.19854 0.91711 1.24958 0.98120 0.94694 0.95784 1.69789 1.38708 1.16997 1.26271 0.86508 0.83282 0.79024 0.78421 1.19998 1.21027 1.20138 0.92570 0.91114 0.92702 0.82604 0.86143 0.85744 0.92497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.85 9.49 37.16 0.35 -2.50 15 2 C 0.07 1.49 3.85 -25.83 -0.10 1.39 15 3 H 0.11 2.12 7.77 -51.93 -0.40 1.71 15 4 O -0.30 -7.08 10.82 -20.36 -0.22 -7.30 15 5 C 0.06 1.31 6.92 -38.92 -0.27 1.05 15 6 C -0.08 -1.84 5.24 -104.11 -0.55 -2.39 15 7 C -0.06 -1.31 8.93 -39.71 -0.35 -1.67 15 8 C -0.14 -2.74 10.07 -39.53 -0.40 -3.14 15 9 C -0.15 -2.83 9.99 -39.61 -0.40 -3.22 15 10 C 0.05 1.09 7.32 -39.17 -0.29 0.80 15 11 F -0.15 -3.27 17.26 2.25 0.04 -3.23 15 12 C 0.06 1.47 2.60 -91.56 -0.24 1.24 15 13 H 0.05 1.34 7.92 -51.93 -0.41 0.93 15 14 C -0.51 -13.44 8.61 -34.44 -0.30 -13.74 15 15 H 0.06 1.68 7.60 -52.49 -0.40 1.28 15 16 C 0.07 1.76 5.33 -17.82 -0.10 1.66 15 17 N -0.88 -22.96 9.89 55.43 0.55 -22.41 15 18 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 15 19 H -0.27 -6.14 7.11 56.52 0.40 -5.73 15 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 21 H -0.28 -6.40 7.11 56.52 0.40 -5.99 15 22 H 0.06 0.99 8.12 -51.93 -0.42 0.57 15 23 H 0.07 1.08 8.14 -51.93 -0.42 0.66 15 24 H 0.05 0.85 8.14 -51.93 -0.42 0.42 15 25 H 0.16 3.62 6.12 -52.49 -0.32 3.30 15 26 H 0.12 1.91 8.06 -52.49 -0.42 1.48 15 27 H 0.12 1.96 8.06 -52.48 -0.42 1.53 15 28 H 0.27 6.62 8.31 -40.82 -0.34 6.28 15 LS Contribution 245.42 15.07 3.70 3.70 Total: -1.00 -27.49 245.42 -6.36 -33.85 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: -2.78 Total: 0.45 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: -2.63 Total: -20.52 kcal Atomic # 7 Polarization: -22.96 SS G_CDS: 0.55 Total: -22.41 kcal Atomic # 8 Polarization: -7.08 SS G_CDS: -0.22 Total: -7.30 kcal Atomic # 9 Polarization: -3.27 SS G_CDS: 0.04 Total: -3.23 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -27.49 -6.36 -33.85 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260719442.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.627 kcal (2) G-P(sol) polarization free energy of solvation -27.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds