Wall clock time and date at job start Mon Mar 30 2020 02:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09007 * 110.66336 * 2 1 4 4 O 1.43766 * 110.90859 * 236.66797 * 2 1 3 5 5 C 1.36193 * 109.23113 * 269.36171 * 4 2 1 6 6 C 1.39263 * 129.86040 * 161.56155 * 5 4 2 7 7 C 1.37931 * 120.27855 * 179.33625 * 6 5 4 8 8 C 1.38481 * 120.32029 * 359.48480 * 7 6 5 9 9 F 1.35097 * 120.14073 * 180.39228 * 8 7 6 10 10 C 1.38535 * 119.71285 * 0.65191 * 8 7 6 11 11 C 1.37751 * 119.95587 * 359.74600 * 10 8 7 12 12 C 1.51648 * 132.13715 * 179.52818 * 11 10 8 13 13 H 1.08995 * 110.94234 * 313.70636 * 12 11 10 14 14 C 1.50709 * 110.93684 * 77.38414 * 12 11 10 15 15 H 1.08004 * 119.99683 * 35.18993 * 14 12 11 16 16 C 1.37877 * 119.99751 * 215.18392 * 14 12 11 17 17 N 1.31517 * 119.99767 * 180.46934 * 16 14 12 18 18 Si 1.86800 * 120.00425 * 0.46678 * 16 14 12 19 19 H 1.48501 * 109.46615 * 85.45877 * 18 16 14 20 20 H 1.48497 * 109.47343 * 205.45911 * 18 16 14 21 21 H 1.48500 * 109.47094 * 325.46528 * 18 16 14 22 22 H 1.08990 * 109.47572 * 296.78528 * 1 2 3 23 23 H 1.09000 * 109.47241 * 56.79053 * 1 2 3 24 24 H 1.09003 * 109.46470 * 176.78214 * 1 2 3 25 25 H 1.08003 * 119.86158 * 359.06192 * 6 5 4 26 26 H 1.07997 * 119.83701 * 179.74736 * 7 6 5 27 27 H 1.07998 * 120.01891 * 179.72254 * 10 8 7 28 28 H 0.97003 * 120.00284 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9147 1.0199 0.0000 4 8 2.0431 -0.7380 -1.1221 5 6 2.2166 -2.0397 -0.7614 6 6 2.3527 -3.1755 -1.5557 7 6 2.5348 -4.4130 -0.9743 8 6 2.5946 -4.5360 0.4037 9 9 2.7810 -5.7488 0.9690 10 6 2.4571 -3.4109 1.2002 11 6 2.2671 -2.1763 0.6196 12 6 2.0781 -0.7924 1.2104 13 1 1.3529 -0.8118 2.0239 14 6 3.3927 -0.2219 1.6770 15 1 4.2987 -0.4353 1.1292 16 6 3.4386 0.5724 2.8030 17 7 4.5843 1.0778 3.2049 18 14 1.8735 0.9309 3.7576 19 1 1.6229 -0.1658 4.7270 20 1 2.0232 2.2142 4.4898 21 1 0.7302 1.0291 2.8150 22 1 -0.3634 0.4631 0.9173 23 1 -0.3634 0.5628 -0.8598 24 1 -0.3632 -1.0261 -0.0577 25 1 2.3111 -3.0876 -2.6313 26 1 2.6355 -5.2896 -1.5970 27 1 2.4984 -3.5018 2.2755 28 1 4.6167 1.6364 3.9973 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260732233.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:56 Heat of formation + Delta-G solvation = -76.358863 kcal Electronic energy + Delta-G solvation = -14953.832341 eV Core-core repulsion = 12269.707434 eV Total energy + Delta-G solvation = -2684.124907 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.080 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.79257 -42.06713 -38.14269 -35.48296 -33.62996 -31.74873 -30.71586 -29.01875 -25.63156 -23.71542 -22.59645 -22.01603 -19.26059 -18.32282 -18.16027 -17.54762 -16.79044 -16.41713 -16.16613 -15.52744 -15.03373 -14.79473 -14.51108 -14.08503 -13.78514 -13.45083 -13.28484 -13.18679 -12.82511 -12.74978 -12.13611 -11.89322 -11.75857 -11.52351 -11.33535 -10.79035 -9.90552 -8.90146 -8.37915 -6.46978 0.24339 0.29263 1.33698 1.34542 1.45855 2.28288 2.41092 2.63748 2.93347 3.27716 3.73653 3.93719 4.03781 4.17751 4.22978 4.32768 4.50590 4.59072 4.77596 4.89334 4.93016 5.14130 5.16940 5.19673 5.29104 5.47483 5.53311 5.72613 6.14586 6.31968 6.58869 7.18436 8.78348 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.028311 B = 0.010871 C = 0.009200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.790751 B = 2575.020704 C = 3042.592418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.066 3.934 3 H 0.102 0.898 4 O -0.311 6.311 5 C 0.076 3.924 6 C -0.114 4.114 7 C -0.116 4.116 8 C 0.053 3.947 9 F -0.144 7.144 10 C -0.123 4.123 11 C -0.133 4.133 12 C 0.027 3.973 13 H 0.069 0.931 14 C -0.514 4.514 15 H 0.023 0.977 16 C 0.019 3.981 17 N -0.941 5.941 18 Si 0.941 3.059 19 H -0.265 1.265 20 H -0.283 1.283 21 H -0.228 1.228 22 H 0.079 0.921 23 H 0.081 0.919 24 H 0.060 0.940 25 H 0.163 0.837 26 H 0.176 0.824 27 H 0.128 0.872 28 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.898 -7.064 -6.521 13.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.010 3.990 3 H 0.120 0.880 4 O -0.226 6.226 5 C 0.031 3.969 6 C -0.133 4.133 7 C -0.135 4.135 8 C 0.033 3.967 9 F -0.123 7.123 10 C -0.141 4.141 11 C -0.134 4.134 12 C 0.008 3.992 13 H 0.087 0.913 14 C -0.551 4.551 15 H 0.042 0.958 16 C -0.180 4.180 17 N -0.579 5.579 18 Si 0.762 3.238 19 H -0.190 1.190 20 H -0.209 1.209 21 H -0.151 1.151 22 H 0.098 0.902 23 H 0.099 0.901 24 H 0.079 0.921 25 H 0.181 0.819 26 H 0.194 0.806 27 H 0.146 0.854 28 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.759 -6.866 -6.575 13.624 hybrid contribution 0.252 0.305 1.142 1.209 sum -9.507 -6.561 -5.432 12.765 Atomic orbital electron populations 1.22231 0.92836 1.03024 1.03742 1.23941 0.94731 0.96338 0.83969 0.88004 1.86752 1.80210 1.16648 1.38946 1.20016 0.97801 0.86145 0.92963 1.20350 1.04125 0.87833 1.00948 1.21026 1.01477 0.98831 0.92136 1.17494 1.07250 0.79781 0.92147 1.91443 1.93303 1.41808 1.85770 1.20318 1.02409 0.90647 1.00774 1.21093 1.01772 0.95655 0.94880 1.19485 0.96282 0.88035 0.95411 0.91311 1.20794 0.92547 1.30520 1.11231 0.95820 1.26029 0.99960 0.94420 0.97583 1.70038 1.27910 1.34317 1.25633 0.85842 0.80235 0.78170 0.79508 1.19033 1.20864 1.15127 0.90209 0.90058 0.92066 0.81915 0.80643 0.85418 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.91 9.52 71.98 0.69 -4.23 15 2 C 0.07 2.65 3.84 31.18 0.12 2.77 15 3 H 0.10 4.25 7.92 -2.38 -0.02 4.24 15 4 O -0.31 -12.79 10.83 -95.75 -1.04 -13.82 15 5 C 0.08 2.97 6.92 22.67 0.16 3.13 15 6 C -0.11 -3.45 10.06 22.44 0.23 -3.23 15 7 C -0.12 -3.23 10.00 22.25 0.22 -3.01 15 8 C 0.05 1.75 7.31 22.40 0.16 1.92 15 9 F -0.14 -4.65 17.27 44.97 0.78 -3.87 15 10 C -0.12 -4.77 10.02 22.23 0.22 -4.55 15 11 C -0.13 -5.64 5.60 -19.53 -0.11 -5.75 15 12 C 0.03 1.22 2.26 -11.40 -0.03 1.19 15 13 H 0.07 2.97 5.16 -2.39 -0.01 2.95 15 14 C -0.51 -28.97 8.91 25.60 0.23 -28.75 15 15 H 0.02 1.54 8.06 -2.91 -0.02 1.52 15 16 C 0.02 1.06 5.47 84.65 0.46 1.52 15 17 N -0.94 -57.39 13.96 21.45 0.30 -57.09 15 18 Si 0.94 40.90 26.94 68.60 1.85 42.75 15 19 H -0.27 -11.21 7.11 99.48 0.71 -10.50 15 20 H -0.28 -12.18 7.11 99.48 0.71 -11.47 15 21 H -0.23 -8.62 6.37 99.48 0.63 -7.99 15 22 H 0.08 2.28 7.62 -2.39 -0.02 2.26 15 23 H 0.08 2.10 8.14 -2.39 -0.02 2.08 15 24 H 0.06 1.79 8.08 -2.39 -0.02 1.78 15 25 H 0.16 3.78 8.06 -2.91 -0.02 3.76 15 26 H 0.18 3.40 8.06 -2.91 -0.02 3.38 15 27 H 0.13 4.90 8.06 -2.91 -0.02 4.88 15 28 H 0.27 15.32 8.31 -92.71 -0.77 14.55 15 Total: -1.00 -64.93 246.95 5.33 -59.59 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 1.09 Total: 11.42 kcal Atomic # 6 Polarization: -41.33 SS G_CDS: 2.35 Total: -38.98 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: 0.30 Total: -57.09 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -1.04 Total: -13.82 kcal Atomic # 9 Polarization: -4.65 SS G_CDS: 0.78 Total: -3.87 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 1.85 Total: 42.75 kcal Total: -64.93 5.33 -59.59 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260732233.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.768 kcal (2) G-P(sol) polarization free energy of solvation -64.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds