Wall clock time and date at job start Mon Mar 30 2020 02:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.63894 * 2 1 4 4 C 1.53149 * 109.55610 * 239.74153 * 2 1 3 5 5 C 1.52972 * 109.30425 * 169.59459 * 4 2 1 6 6 C 1.52285 * 108.79925 * 51.18462 * 5 4 2 7 7 C 1.39202 * 123.50774 * 162.54424 * 6 5 4 8 8 C 1.32907 * 115.70418 * 179.97438 * 7 6 5 9 9 S 1.75727 * 109.58523 * 359.97438 * 8 7 6 10 10 C 1.34947 * 122.91761 * 342.47485 * 6 5 4 11 11 C 1.51406 * 124.55108 * 0.09703 * 10 6 5 12 12 H 1.09000 * 109.59869 * 223.74457 * 11 10 6 13 13 C 1.50697 * 109.60461 * 103.42910 * 11 10 6 14 14 H 1.08007 * 119.99674 * 245.91964 * 13 11 10 15 15 C 1.37877 * 120.00187 * 65.91608 * 13 11 10 16 16 N 1.31508 * 119.99708 * 9.77832 * 15 13 11 17 17 Si 1.86803 * 120.00123 * 189.77526 * 15 13 11 18 18 H 1.48500 * 109.47068 * 265.18584 * 17 15 13 19 19 H 1.48502 * 109.46926 * 145.18549 * 17 15 13 20 20 H 1.48503 * 109.46761 * 25.18742 * 17 15 13 21 21 H 1.09002 * 109.47162 * 299.73723 * 1 2 3 22 22 H 1.08998 * 109.47455 * 59.74428 * 1 2 3 23 23 H 1.08996 * 109.47013 * 179.74438 * 1 2 3 24 24 H 1.09004 * 109.49844 * 289.54838 * 4 2 1 25 25 H 1.09002 * 109.49747 * 49.60922 * 4 2 1 26 26 H 1.09001 * 109.58580 * 170.97881 * 5 4 2 27 27 H 1.09002 * 109.58458 * 291.38920 * 5 4 2 28 28 H 1.08001 * 122.14699 * 359.97108 * 7 6 5 29 29 H 1.08001 * 125.21157 * 179.97438 * 8 7 6 30 30 H 0.97008 * 119.99916 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8963 1.0265 0.0000 4 6 2.0427 -0.7272 -1.2465 5 6 3.5500 -0.5026 -1.3790 6 6 4.2161 -0.8495 -0.0542 7 6 5.5796 -1.0961 0.0790 8 6 5.9960 -1.3844 1.3078 9 16 4.6305 -1.3588 2.4135 10 6 3.5344 -0.9453 1.1065 11 6 2.0427 -0.7273 1.2467 12 1 1.8432 -0.1220 2.1310 13 6 1.3474 -2.0578 1.3776 14 1 0.6763 -2.3950 0.6013 15 6 1.5679 -2.8447 2.4880 16 7 2.2269 -2.3594 3.5174 17 14 0.9304 -4.6001 2.5305 18 1 -0.3921 -4.6302 3.2053 19 1 1.8869 -5.4561 3.2773 20 1 0.7897 -5.1092 1.1426 21 1 -0.3633 0.5098 0.8923 22 1 -0.3634 0.5178 -0.8876 23 1 -0.3633 -1.0276 -0.0046 24 1 1.8405 -1.7943 -1.1542 25 1 1.5370 -0.3363 -2.1295 26 1 3.9471 -1.1433 -2.1664 27 1 3.7437 0.5420 -1.6228 28 1 6.2558 -1.0559 -0.7623 29 1 7.0172 -1.6013 1.5844 30 1 2.3817 -2.9129 4.2989 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260993301.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:37 Heat of formation + Delta-G solvation = -5.990683 kcal Electronic energy + Delta-G solvation = -13483.589312 eV Core-core repulsion = 11368.728974 eV Total energy + Delta-G solvation = -2114.860338 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.077 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.96853 -36.69817 -34.54494 -31.77931 -30.64177 -27.46490 -26.16357 -23.93435 -22.70197 -20.92144 -19.28723 -18.05006 -17.06826 -16.53814 -15.67805 -15.27724 -14.76521 -14.61042 -14.27333 -13.94392 -13.42668 -12.95807 -12.86171 -12.77079 -12.56328 -12.51391 -12.12212 -12.06375 -11.75429 -11.35206 -11.16913 -10.88762 -10.53868 -10.39624 -8.99199 -8.74163 -8.10550 -6.17036 0.62965 1.32597 1.38784 1.42454 1.50307 1.82087 2.17004 2.43610 3.19557 4.14057 4.21897 4.31133 4.46479 4.61987 4.73401 4.85600 4.89106 5.02014 5.10016 5.16002 5.26882 5.29996 5.42173 5.55145 5.60075 5.65039 5.67213 5.86497 6.03413 6.13579 6.32601 6.87031 7.44127 8.91761 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.022372 B = 0.016143 C = 0.011146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.237848 B = 1734.113712 C = 2511.613957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.076 4.076 3 H 0.053 0.947 4 C -0.103 4.103 5 C -0.040 4.040 6 C -0.176 4.176 7 C -0.132 4.132 8 C -0.296 4.296 9 S 0.120 5.880 10 C -0.131 4.131 11 C 0.104 3.896 12 H 0.002 0.998 13 C -0.501 4.501 14 H 0.067 0.933 15 C 0.017 3.983 16 N -0.896 5.896 17 Si 0.940 3.060 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.270 1.270 21 H 0.037 0.963 22 H 0.065 0.935 23 H 0.051 0.949 24 H 0.048 0.952 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.144 0.856 29 H 0.167 0.833 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.540 2.865 -7.230 8.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.096 4.096 3 H 0.071 0.929 4 C -0.141 4.141 5 C -0.079 4.079 6 C -0.188 4.188 7 C -0.163 4.163 8 C -0.432 4.432 9 S 0.387 5.613 10 C -0.250 4.250 11 C 0.084 3.916 12 H 0.020 0.980 13 C -0.539 4.539 14 H 0.085 0.915 15 C -0.183 4.183 16 N -0.535 5.535 17 Si 0.766 3.234 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.195 1.195 21 H 0.057 0.943 22 H 0.084 0.916 23 H 0.070 0.930 24 H 0.066 0.934 25 H 0.098 0.902 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.162 0.838 29 H 0.184 0.816 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.474 2.541 -5.443 6.497 hybrid contribution 0.066 -0.943 -0.707 1.181 sum 2.540 1.597 -6.150 6.843 Atomic orbital electron populations 1.21669 0.94683 1.01600 1.00421 1.21093 0.96060 0.97427 0.95021 0.92881 1.21500 0.95106 1.00317 0.97141 1.20401 0.94427 1.01180 0.91911 1.19968 0.93438 1.09302 0.96055 1.20044 0.95157 1.03435 0.97690 1.26060 1.04029 1.13473 0.99646 1.84963 0.95908 1.68203 1.12184 1.25701 1.00896 1.03317 0.95085 1.17575 0.85169 0.95217 0.93632 0.97971 1.21405 1.24849 1.03277 1.04344 0.91486 1.25605 0.95996 1.01359 0.95330 1.69720 1.41281 1.37204 1.05278 0.85804 0.78030 0.81387 0.78136 1.20213 1.21382 1.19465 0.94347 0.91642 0.93015 0.93363 0.90169 0.90412 0.90448 0.83824 0.81580 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.52 8.77 71.98 0.63 -3.89 16 2 C -0.08 -2.99 2.50 -10.69 -0.03 -3.02 16 3 H 0.05 2.00 8.11 -2.39 -0.02 1.98 16 4 C -0.10 -3.60 5.15 30.63 0.16 -3.44 16 5 C -0.04 -1.33 6.15 30.35 0.19 -1.14 16 6 C -0.18 -7.28 5.78 -19.88 -0.11 -7.40 16 7 C -0.13 -4.99 10.00 21.33 0.21 -4.78 16 8 C -0.30 -11.57 11.20 66.65 0.75 -10.82 16 9 S 0.12 5.64 20.70 -56.49 -1.17 4.47 16 10 C -0.13 -6.26 5.42 25.15 0.14 -6.12 16 11 C 0.10 5.12 2.13 -12.01 -0.03 5.09 16 12 H 0.00 0.13 8.08 -2.39 -0.02 0.11 16 13 C -0.50 -26.12 6.91 25.60 0.18 -25.94 16 14 H 0.07 3.42 5.80 -2.91 -0.02 3.40 16 15 C 0.02 0.89 5.21 84.66 0.44 1.33 16 16 N -0.90 -49.73 10.62 21.45 0.23 -49.50 16 17 Si 0.94 43.07 29.55 68.60 2.03 45.10 16 18 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 19 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 20 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 21 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 22 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 23 H 0.05 1.98 6.17 -2.39 -0.01 1.96 16 24 H 0.05 1.91 6.98 -2.39 -0.02 1.89 16 25 H 0.08 2.25 8.11 -2.39 -0.02 2.24 16 26 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.14 4.40 8.06 -2.91 -0.02 4.38 16 29 H 0.17 5.40 8.06 -2.91 -0.02 5.38 16 30 H 0.26 14.16 8.31 -92.70 -0.77 13.39 16 Total: -1.00 -57.94 251.65 4.73 -53.21 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: 1.12 Total: 6.85 kcal Atomic # 6 Polarization: -62.65 SS G_CDS: 2.52 Total: -60.13 kcal Atomic # 7 Polarization: -49.73 SS G_CDS: 0.23 Total: -49.50 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 16 Polarization: 5.64 SS G_CDS: -1.17 Total: 4.47 kcal Total: -57.94 4.73 -53.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260993301.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.220 kcal (2) G-P(sol) polarization free energy of solvation -57.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds