Wall clock time and date at job start Mon Mar 30 2020 02:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.55177 * 2 1 4 4 C 1.53152 * 109.55652 * 120.30404 * 2 1 3 5 5 C 1.52980 * 109.30374 * 190.40488 * 4 2 1 6 6 C 1.52279 * 108.79720 * 308.81530 * 5 4 2 7 7 C 1.39209 * 123.50871 * 197.43342 * 6 5 4 8 8 C 1.32904 * 115.70504 * 180.02562 * 7 6 5 9 9 S 1.75728 * 109.58614 * 0.02562 * 8 7 6 10 10 C 1.34638 * 122.82637 * 17.48130 * 6 5 4 11 11 C 1.51408 * 124.78931 * 359.97438 * 10 6 5 12 12 H 1.09000 * 109.72995 * 256.47809 * 11 10 6 13 13 C 1.50701 * 109.59636 * 136.07938 * 11 10 6 14 14 H 1.08002 * 119.99761 * 240.78147 * 13 11 10 15 15 C 1.37871 * 119.99694 * 61.06710 * 13 11 10 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 11 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 11 18 18 H 1.48504 * 109.47209 * 89.99886 * 17 15 13 19 19 H 1.48501 * 109.47358 * 209.99377 * 17 15 13 20 20 H 1.48496 * 109.47341 * 329.99989 * 17 15 13 21 21 H 1.09002 * 109.46851 * 180.20916 * 1 2 3 22 22 H 1.09002 * 109.46917 * 300.20936 * 1 2 3 23 23 H 1.08998 * 109.46983 * 60.20944 * 1 2 3 24 24 H 1.09000 * 109.49913 * 310.35689 * 4 2 1 25 25 H 1.09008 * 109.49461 * 70.42272 * 4 2 1 26 26 H 1.09001 * 109.58200 * 68.60798 * 5 4 2 27 27 H 1.09005 * 109.58195 * 189.02636 * 5 4 2 28 28 H 1.08001 * 122.14391 * 0.02562 * 7 6 5 29 29 H 1.08001 * 125.21001 * 180.02562 * 8 7 6 30 30 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0272 0.0000 4 6 2.0427 -0.7282 1.2460 5 6 3.5501 -0.5037 1.3786 6 6 4.2161 -0.8495 0.0536 7 6 5.5798 -1.0957 -0.0800 8 6 5.9960 -1.3831 -1.3090 9 16 4.6304 -1.3572 -2.4146 10 6 3.5340 -0.9446 -1.1033 11 6 2.0426 -0.7267 -1.2472 12 1 1.5380 -1.6879 -1.3443 13 6 1.7700 0.1131 -2.4685 14 1 1.2795 1.0700 -2.3673 15 6 2.1415 -0.3429 -3.7155 16 7 2.7387 -1.5081 -3.8387 17 14 1.7965 0.6946 -5.2301 18 1 2.9507 1.5927 -5.4883 19 1 1.5890 -0.1938 -6.4019 20 1 0.5759 1.5096 -5.0045 21 1 -0.3633 -1.0277 0.0038 22 1 -0.3633 0.5171 0.8881 23 1 -0.3633 0.5106 -0.8918 24 1 1.5375 -0.3376 2.1293 25 1 1.8400 -1.7952 1.1529 26 1 3.7438 0.5407 1.6232 27 1 3.9472 -1.1451 2.1654 28 1 6.2560 -1.0556 0.7612 29 1 7.0173 -1.5994 -1.5859 30 1 2.9997 -1.8290 -4.7160 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260993305.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:40 Heat of formation + Delta-G solvation = 3.629531 kcal Electronic energy + Delta-G solvation = -13447.806670 eV Core-core repulsion = 11333.363496 eV Total energy + Delta-G solvation = -2114.443174 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.077 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.18210 -34.90100 -33.06675 -30.28008 -28.84910 -25.74124 -24.52856 -22.02126 -20.93716 -19.31741 -16.96903 -16.67296 -15.54390 -14.76188 -13.76836 -13.52943 -13.20852 -12.82988 -12.46095 -12.35757 -11.99922 -11.33678 -11.25957 -10.95894 -10.78770 -10.66597 -10.63977 -10.30515 -9.97472 -9.91798 -9.74975 -9.35244 -8.88913 -8.13310 -6.94963 -6.79569 -6.18656 -4.42048 2.62557 3.13287 3.23426 3.25172 3.50770 3.95203 4.03890 4.22353 5.03661 5.66130 5.69360 5.77409 6.02856 6.23261 6.31461 6.40689 6.42046 6.49572 6.61553 6.63923 6.74793 6.92146 7.00492 7.04296 7.14623 7.46746 7.53291 7.68264 7.83518 7.90228 8.13299 8.61616 9.16937 10.62158 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.024925 B = 0.015484 C = 0.010226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.122121 B = 1807.849437 C = 2737.458185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.078 4.078 3 H 0.061 0.939 4 C -0.113 4.113 5 C -0.042 4.042 6 C -0.175 4.175 7 C -0.145 4.145 8 C -0.366 4.366 9 S 0.271 5.729 10 C -0.123 4.123 11 C 0.099 3.901 12 H 0.048 0.952 13 C -0.466 4.466 14 H 0.069 0.931 15 C 0.040 3.960 16 N -0.873 5.873 17 Si 0.907 3.093 18 H -0.275 1.275 19 H -0.281 1.281 20 H -0.271 1.271 21 H 0.046 0.954 22 H 0.036 0.964 23 H 0.059 0.941 24 H 0.049 0.951 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.091 0.909 29 H 0.121 0.879 30 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.346 1.049 4.182 4.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.098 4.098 3 H 0.080 0.920 4 C -0.150 4.150 5 C -0.082 4.082 6 C -0.187 4.187 7 C -0.176 4.176 8 C -0.502 4.502 9 S 0.536 5.464 10 C -0.242 4.242 11 C 0.079 3.921 12 H 0.066 0.934 13 C -0.504 4.504 14 H 0.088 0.912 15 C -0.154 4.154 16 N -0.519 5.519 17 Si 0.734 3.266 18 H -0.201 1.201 19 H -0.207 1.207 20 H -0.196 1.196 21 H 0.065 0.935 22 H 0.055 0.945 23 H 0.078 0.922 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.109 0.891 29 H 0.139 0.861 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.429 0.691 2.415 2.548 hybrid contribution 0.406 0.670 0.875 1.175 sum -0.023 1.361 3.290 3.561 Atomic orbital electron populations 1.21726 0.96124 1.00889 1.00456 1.21168 0.94503 0.99363 0.94788 0.92020 1.21612 0.95226 1.00532 0.97636 1.20269 0.94466 0.99602 0.93837 1.19287 0.93157 1.11306 0.94930 1.19458 0.94633 1.06973 0.96568 1.27720 1.08018 1.10079 1.04378 1.86511 0.90212 1.64395 1.05282 1.25579 1.00904 1.02781 0.94982 1.17752 0.85950 0.96343 0.92018 0.93434 1.21633 1.34097 1.03942 0.90770 0.91242 1.25115 0.95422 0.95004 0.99853 1.67998 1.39633 1.19678 1.24555 0.86267 0.79057 0.79938 0.81314 1.20088 1.20691 1.19564 0.93533 0.94474 0.92170 0.93193 0.92477 0.92624 0.92810 0.89098 0.86089 0.90804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 9.04 37.16 0.34 -2.06 16 2 C -0.08 -1.58 2.11 -90.45 -0.19 -1.77 16 3 H 0.06 1.29 8.07 -51.93 -0.42 0.87 16 4 C -0.11 -2.05 5.19 -26.66 -0.14 -2.19 16 5 C -0.04 -0.80 6.15 -27.11 -0.17 -0.97 16 6 C -0.18 -3.98 5.78 -104.75 -0.61 -4.58 16 7 C -0.15 -3.24 10.00 -41.06 -0.41 -3.65 16 8 C -0.37 -8.24 11.20 28.89 0.32 -7.91 16 9 S 0.27 6.57 18.21 -107.50 -1.96 4.61 16 10 C -0.12 -3.02 5.79 -35.24 -0.20 -3.22 16 11 C 0.10 2.38 1.88 -92.48 -0.17 2.21 16 12 H 0.05 1.24 8.12 -51.93 -0.42 0.82 16 13 C -0.47 -11.76 7.89 -34.44 -0.27 -12.03 16 14 H 0.07 1.72 7.46 -52.49 -0.39 1.33 16 15 C 0.04 1.01 4.79 -17.82 -0.09 0.92 16 16 N -0.87 -22.48 8.84 55.43 0.49 -21.99 16 17 Si 0.91 19.87 29.54 -169.99 -5.02 14.85 16 18 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 19 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 20 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 21 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 22 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.06 1.11 7.39 -51.93 -0.38 0.73 16 24 H 0.05 0.78 8.11 -51.93 -0.42 0.36 16 25 H 0.06 1.06 8.10 -51.92 -0.42 0.64 16 26 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 29 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 30 H 0.28 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 251.97 15.07 3.80 3.80 Total: -1.00 -26.10 251.97 -8.41 -34.50 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -4.13 Total: -0.52 kcal Atomic # 6 Polarization: -33.66 SS G_CDS: -1.59 Total: -35.25 kcal Atomic # 7 Polarization: -22.48 SS G_CDS: 0.49 Total: -21.99 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Atomic # 16 Polarization: 6.57 SS G_CDS: -1.96 Total: 4.61 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -26.10 -8.41 -34.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260993305.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.135 kcal (2) G-P(sol) polarization free energy of solvation -26.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds