Wall clock time and date at job start Mon Mar 30 2020 02:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.55177 * 2 1 4 4 C 1.53152 * 109.55652 * 120.30404 * 2 1 3 5 5 C 1.52980 * 109.30374 * 190.40488 * 4 2 1 6 6 C 1.52279 * 108.79720 * 308.81530 * 5 4 2 7 7 C 1.39209 * 123.50871 * 197.43342 * 6 5 4 8 8 C 1.32904 * 115.70504 * 180.02562 * 7 6 5 9 9 S 1.75728 * 109.58614 * 0.02562 * 8 7 6 10 10 C 1.34638 * 122.82637 * 17.48130 * 6 5 4 11 11 C 1.51408 * 124.78931 * 359.97438 * 10 6 5 12 12 H 1.09000 * 109.72995 * 256.47809 * 11 10 6 13 13 C 1.50701 * 109.59636 * 136.07938 * 11 10 6 14 14 H 1.08002 * 119.99761 * 240.78147 * 13 11 10 15 15 C 1.37871 * 119.99694 * 61.06710 * 13 11 10 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 11 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 11 18 18 H 1.48504 * 109.47209 * 89.99886 * 17 15 13 19 19 H 1.48501 * 109.47358 * 209.99377 * 17 15 13 20 20 H 1.48496 * 109.47341 * 329.99989 * 17 15 13 21 21 H 1.09002 * 109.46851 * 180.20916 * 1 2 3 22 22 H 1.09002 * 109.46917 * 300.20936 * 1 2 3 23 23 H 1.08998 * 109.46983 * 60.20944 * 1 2 3 24 24 H 1.09000 * 109.49913 * 310.35689 * 4 2 1 25 25 H 1.09008 * 109.49461 * 70.42272 * 4 2 1 26 26 H 1.09001 * 109.58200 * 68.60798 * 5 4 2 27 27 H 1.09005 * 109.58195 * 189.02636 * 5 4 2 28 28 H 1.08001 * 122.14391 * 0.02562 * 7 6 5 29 29 H 1.08001 * 125.21001 * 180.02562 * 8 7 6 30 30 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0272 0.0000 4 6 2.0427 -0.7282 1.2460 5 6 3.5501 -0.5037 1.3786 6 6 4.2161 -0.8495 0.0536 7 6 5.5798 -1.0957 -0.0800 8 6 5.9960 -1.3831 -1.3090 9 16 4.6304 -1.3572 -2.4146 10 6 3.5340 -0.9446 -1.1033 11 6 2.0426 -0.7267 -1.2472 12 1 1.5380 -1.6879 -1.3443 13 6 1.7700 0.1131 -2.4685 14 1 1.2795 1.0700 -2.3673 15 6 2.1415 -0.3429 -3.7155 16 7 2.7387 -1.5081 -3.8387 17 14 1.7965 0.6946 -5.2301 18 1 2.9507 1.5927 -5.4883 19 1 1.5890 -0.1938 -6.4019 20 1 0.5759 1.5096 -5.0045 21 1 -0.3633 -1.0277 0.0038 22 1 -0.3633 0.5171 0.8881 23 1 -0.3633 0.5106 -0.8918 24 1 1.5375 -0.3376 2.1293 25 1 1.8400 -1.7952 1.1529 26 1 3.7438 0.5407 1.6232 27 1 3.9472 -1.1451 2.1654 28 1 6.2560 -1.0556 0.7612 29 1 7.0173 -1.5994 -1.5859 30 1 2.9997 -1.8290 -4.7160 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260993305.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:40 Heat of formation + Delta-G solvation = -8.242141 kcal Electronic energy + Delta-G solvation = -13448.321464 eV Core-core repulsion = 11333.363496 eV Total energy + Delta-G solvation = -2114.957968 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.077 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.85167 -36.63806 -34.86182 -31.88665 -30.57655 -27.51374 -26.19079 -23.75016 -22.58555 -20.96501 -18.79189 -18.42938 -17.34863 -16.57145 -15.49682 -15.10288 -14.85018 -14.45924 -14.12738 -14.03418 -13.65762 -13.01084 -12.90355 -12.66972 -12.49013 -12.39737 -12.23576 -12.00272 -11.68756 -11.60944 -11.37258 -11.02749 -10.62891 -9.98113 -8.77494 -8.65252 -8.06587 -6.37327 0.80721 1.37014 1.43288 1.51338 1.69490 2.15479 2.28159 2.39339 3.13034 4.15640 4.16793 4.27314 4.48892 4.68903 4.73219 4.85787 4.86909 4.99608 5.10183 5.14476 5.21469 5.29360 5.36860 5.46881 5.54355 5.67349 5.75164 5.85659 6.05369 6.14558 6.29819 6.71670 7.23871 8.71727 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.024925 B = 0.015484 C = 0.010226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.122121 B = 1807.849437 C = 2737.458185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.077 4.077 3 H 0.053 0.947 4 C -0.107 4.107 5 C -0.043 4.043 6 C -0.175 4.175 7 C -0.153 4.153 8 C -0.364 4.364 9 S 0.225 5.775 10 C -0.155 4.155 11 C 0.099 3.901 12 H 0.013 0.987 13 C -0.488 4.488 14 H 0.067 0.933 15 C 0.003 3.997 16 N -0.892 5.892 17 Si 0.960 3.040 18 H -0.277 1.277 19 H -0.278 1.278 20 H -0.265 1.265 21 H 0.045 0.955 22 H 0.069 0.931 23 H 0.045 0.955 24 H 0.086 0.914 25 H 0.048 0.952 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.119 0.881 29 H 0.143 0.857 30 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.233 1.785 5.740 6.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.097 4.097 3 H 0.071 0.929 4 C -0.145 4.145 5 C -0.082 4.082 6 C -0.187 4.187 7 C -0.184 4.184 8 C -0.500 4.500 9 S 0.490 5.510 10 C -0.274 4.274 11 C 0.080 3.920 12 H 0.031 0.969 13 C -0.525 4.525 14 H 0.085 0.915 15 C -0.189 4.189 16 N -0.537 5.537 17 Si 0.785 3.215 18 H -0.203 1.203 19 H -0.204 1.204 20 H -0.189 1.189 21 H 0.064 0.936 22 H 0.087 0.913 23 H 0.064 0.936 24 H 0.104 0.896 25 H 0.067 0.933 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.137 0.863 29 H 0.160 0.840 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.326 1.424 3.980 4.239 hybrid contribution 0.446 0.408 0.434 0.744 sum 0.120 1.831 4.414 4.781 Atomic orbital electron populations 1.21665 0.94453 1.01138 1.01341 1.21130 0.95971 0.98445 0.94110 0.92860 1.21583 0.95127 0.99891 0.97850 1.20405 0.94589 1.00936 0.92257 1.19861 0.93521 1.09216 0.96064 1.19812 0.94981 1.06278 0.97329 1.27818 1.08313 1.09826 1.04036 1.86445 0.91864 1.65675 1.07062 1.25755 1.01305 1.04865 0.95503 1.17674 0.85818 0.94899 0.93650 0.96895 1.21842 1.34735 1.04192 0.91781 0.91475 1.25774 0.95173 0.95868 1.02111 1.68180 1.39970 1.20618 1.24901 0.85465 0.78858 0.78647 0.78560 1.20253 1.20373 1.18922 0.93609 0.91256 0.93564 0.89588 0.93331 0.91169 0.90411 0.86280 0.83951 0.90929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.39 9.04 71.98 0.65 -3.74 16 2 C -0.08 -3.01 2.11 -10.68 -0.02 -3.03 16 3 H 0.05 2.17 8.07 -2.38 -0.02 2.15 16 4 C -0.11 -3.60 5.19 30.64 0.16 -3.45 16 5 C -0.04 -1.48 6.15 30.35 0.19 -1.29 16 6 C -0.17 -7.65 5.78 -19.95 -0.12 -7.77 16 7 C -0.15 -6.49 10.00 21.33 0.21 -6.28 16 8 C -0.36 -15.93 11.20 66.65 0.75 -15.18 16 9 S 0.22 11.03 18.21 -56.49 -1.03 10.00 16 10 C -0.16 -7.65 5.79 25.09 0.15 -7.51 16 11 C 0.10 4.85 1.88 -12.00 -0.02 4.82 16 12 H 0.01 0.71 8.12 -2.39 -0.02 0.69 16 13 C -0.49 -25.06 7.89 25.60 0.20 -24.86 16 14 H 0.07 3.37 7.46 -2.91 -0.02 3.35 16 15 C 0.00 0.17 4.79 84.65 0.41 0.57 16 16 N -0.89 -47.13 8.84 21.45 0.19 -46.94 16 17 Si 0.96 41.11 29.54 68.60 2.03 43.14 16 18 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 19 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 20 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 21 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 22 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 23 H 0.05 1.68 7.39 -2.39 -0.02 1.66 16 24 H 0.09 2.30 8.11 -2.39 -0.02 2.28 16 25 H 0.05 1.71 8.10 -2.38 -0.02 1.69 16 26 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 28 H 0.12 4.34 8.06 -2.91 -0.02 4.32 16 29 H 0.14 5.50 8.06 -2.91 -0.02 5.48 16 30 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -55.80 251.97 4.85 -50.96 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: 1.11 Total: 10.54 kcal Atomic # 6 Polarization: -70.25 SS G_CDS: 2.55 Total: -67.70 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: 0.19 Total: -46.94 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Atomic # 16 Polarization: 11.03 SS G_CDS: -1.03 Total: 10.00 kcal Total: -55.80 4.85 -50.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260993305.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.714 kcal (2) G-P(sol) polarization free energy of solvation -55.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds