Wall clock time and date at job start Mon Mar 30 2020 02:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47154 * 2 1 4 4 C 1.32634 * 125.17523 * 90.00193 * 3 2 1 5 5 C 1.40115 * 115.63234 * 180.02562 * 4 3 2 6 6 C 1.33824 * 113.70973 * 0.05657 * 5 4 3 7 7 S 1.75583 * 125.17417 * 270.02056 * 3 2 1 8 8 C 1.52115 * 110.67737 * 179.97438 * 6 5 4 9 9 H 1.09002 * 110.36343 * 101.45726 * 8 6 5 10 10 C 1.50704 * 110.36540 * 223.66410 * 8 6 5 11 11 H 1.07996 * 119.99956 * 117.06750 * 10 8 6 12 12 C 1.37873 * 119.99996 * 297.07091 * 10 8 6 13 13 N 1.31522 * 119.99849 * 359.97438 * 12 10 8 14 14 Si 1.86802 * 119.99858 * 179.97438 * 12 10 8 15 15 H 1.48494 * 109.46978 * 59.99995 * 14 12 10 16 16 H 1.48506 * 109.46902 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47105 * 299.99480 * 14 12 10 18 18 C 1.54220 * 104.84368 * 342.61545 * 8 6 5 19 19 C 1.52796 * 136.53877 * 180.10637 * 5 4 3 20 20 H 1.08990 * 109.47566 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.47282 * 300.00367 * 1 2 3 22 22 H 1.09007 * 109.46925 * 59.99721 * 1 2 3 23 23 H 1.08998 * 109.46833 * 239.99561 * 2 1 3 24 24 H 1.09001 * 109.46488 * 119.99745 * 2 1 3 25 25 H 1.07996 * 122.18185 * 359.97438 * 4 3 2 26 26 H 0.96997 * 119.99196 * 180.02562 * 13 12 10 27 27 H 1.08999 * 110.97805 * 144.58280 * 18 8 6 28 28 H 1.09001 * 110.97790 * 268.36204 * 18 8 6 29 29 H 1.08995 * 110.32523 * 316.43281 * 19 5 4 30 30 H 1.09004 * 110.32513 * 78.54785 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2871 2.1411 1.0841 5 6 2.7471 3.4441 0.8518 6 6 2.8547 3.7534 -0.4457 7 16 2.3690 2.3746 -1.4352 8 6 3.3574 5.1787 -0.6182 9 1 4.4193 5.1792 -0.8640 10 6 2.5712 5.8858 -1.6920 11 1 1.9761 6.7521 -1.4436 12 6 2.6115 5.4267 -2.9914 13 7 3.3366 4.3719 -3.2939 14 14 1.6364 6.3028 -4.3222 15 1 2.0943 7.7116 -4.4251 16 1 1.8468 5.6170 -5.6226 17 1 0.1924 6.2755 -3.9769 18 6 3.1231 5.8487 0.7510 19 6 3.1714 4.6389 1.7045 20 1 -0.3634 -1.0275 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.8933 -0.5139 -0.8899 24 1 1.8932 -0.5138 0.8900 25 1 2.1481 1.7493 2.0809 26 1 3.3653 4.0492 -4.2081 27 1 3.9185 6.5582 0.9795 28 1 2.1476 6.3337 0.7863 29 1 2.4759 4.7797 2.5318 30 1 4.1837 4.4942 2.0820 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260993685.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:35 Heat of formation + Delta-G solvation = 0.784669 kcal Electronic energy + Delta-G solvation = -12989.007588 eV Core-core repulsion = 10874.441051 eV Total energy + Delta-G solvation = -2114.566536 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.077 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.97867 -36.67559 -34.58389 -32.89906 -29.57675 -28.13900 -25.88954 -24.30622 -22.26338 -20.97157 -18.98773 -18.50739 -17.49682 -16.47812 -15.95319 -15.17190 -14.88524 -14.72431 -14.11761 -13.82058 -13.52803 -13.08109 -12.79359 -12.73055 -12.68992 -12.44875 -12.38773 -11.94585 -11.77574 -11.67916 -11.30088 -11.13270 -10.94659 -10.49033 -8.93306 -8.75275 -8.14957 -6.28973 0.60073 1.16712 1.38734 1.39815 1.46993 1.84990 2.10582 2.39695 3.13540 3.82065 4.21324 4.25498 4.32283 4.44850 4.52807 4.70792 4.81198 4.94414 5.00853 5.06932 5.11511 5.16063 5.23018 5.38014 5.38673 5.57245 5.60478 5.78058 5.97894 5.99675 6.25069 6.78336 7.37418 8.88317 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.026982 B = 0.011709 C = 0.008971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.485410 B = 2390.686880 C = 3120.400144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.041 4.041 3 C -0.238 4.238 4 C -0.126 4.126 5 C -0.197 4.197 6 C -0.142 4.142 7 S 0.125 5.875 8 C 0.092 3.908 9 H 0.010 0.990 10 C -0.531 4.531 11 H 0.058 0.942 12 C 0.018 3.982 13 N -0.902 5.902 14 Si 0.949 3.051 15 H -0.269 1.269 16 H -0.282 1.282 17 H -0.274 1.274 18 C -0.105 4.105 19 C -0.040 4.040 20 H 0.082 0.918 21 H 0.054 0.946 22 H 0.039 0.961 23 H 0.069 0.931 24 H 0.092 0.908 25 H 0.142 0.858 26 H 0.264 0.736 27 H 0.078 0.922 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.235 -5.925 7.096 9.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.080 4.080 3 C -0.356 4.356 4 C -0.157 4.157 5 C -0.208 4.208 6 C -0.261 4.261 7 S 0.392 5.608 8 C 0.072 3.928 9 H 0.028 0.972 10 C -0.569 4.569 11 H 0.076 0.924 12 C -0.181 4.181 13 N -0.540 5.540 14 Si 0.774 3.226 15 H -0.194 1.194 16 H -0.208 1.208 17 H -0.200 1.200 18 C -0.144 4.144 19 C -0.079 4.079 20 H 0.100 0.900 21 H 0.073 0.927 22 H 0.058 0.942 23 H 0.087 0.913 24 H 0.110 0.890 25 H 0.160 0.840 26 H 0.074 0.926 27 H 0.096 0.904 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.281 -6.335 5.347 8.916 hybrid contribution -0.134 0.859 0.302 0.920 sum -3.415 -5.476 5.649 8.577 Atomic orbital electron populations 1.21746 0.94073 1.02544 1.01517 1.20024 0.96367 0.88405 1.03176 1.25066 1.10245 1.02275 0.97983 1.19516 1.04002 0.92745 0.99409 1.20955 1.07867 0.96921 0.95081 1.26301 1.03004 1.01286 0.95465 1.84529 1.64358 1.04161 1.07735 1.18201 0.94354 0.86371 0.93827 0.97187 1.21530 1.28772 1.13160 0.93465 0.92362 1.25707 0.96146 0.95710 1.00531 1.69835 1.40395 1.23999 1.19819 0.85741 0.79289 0.79079 0.78470 1.19352 1.20768 1.19955 1.22291 1.01362 0.96811 0.93940 1.20868 1.00952 0.89784 0.96345 0.89962 0.92687 0.94220 0.91280 0.88960 0.84012 0.92645 0.90360 0.92080 0.90137 0.90524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 9.89 71.98 0.71 -2.83 16 2 C -0.04 -1.15 6.42 29.85 0.19 -0.96 16 3 C -0.24 -9.06 5.73 24.52 0.14 -8.92 16 4 C -0.13 -4.81 10.03 21.56 0.22 -4.59 16 5 C -0.20 -8.47 6.54 -19.73 -0.13 -8.60 16 6 C -0.14 -7.12 6.11 25.14 0.15 -6.96 16 7 S 0.13 5.92 21.21 -56.49 -1.20 4.72 16 8 C 0.09 4.77 2.80 -11.42 -0.03 4.74 16 9 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 10 C -0.53 -29.47 8.53 25.60 0.22 -29.25 16 11 H 0.06 3.16 7.63 -2.91 -0.02 3.13 16 12 C 0.02 1.02 5.28 84.65 0.45 1.47 16 13 N -0.90 -51.38 10.74 21.45 0.23 -51.15 16 14 Si 0.95 43.73 29.54 68.60 2.03 45.75 16 15 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 16 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 17 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 18 C -0.11 -4.31 6.60 31.38 0.21 -4.10 16 19 C -0.04 -1.47 6.81 30.90 0.21 -1.26 16 20 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 21 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 22 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 23 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.09 2.17 8.14 -2.39 -0.02 2.16 16 25 H 0.14 4.43 8.06 -2.91 -0.02 4.41 16 26 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 27 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 28 H 0.06 2.49 7.81 -2.39 -0.02 2.48 16 29 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -61.39 262.64 4.50 -56.89 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: 1.11 Total: 5.04 kcal Atomic # 6 Polarization: -63.59 SS G_CDS: 2.34 Total: -61.26 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: 0.23 Total: -51.15 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: 5.92 SS G_CDS: -1.20 Total: 4.72 kcal Total: -61.39 4.50 -56.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260993685.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.670 kcal (2) G-P(sol) polarization free energy of solvation -61.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds