Wall clock time and date at job start Mon Mar 30 2020 02:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33380 * 125.20552 * 2 1 4 4 C 1.38430 * 114.92397 * 179.97438 * 3 2 1 5 5 C 1.33382 * 114.91934 * 0.02562 * 4 3 2 6 6 C 1.50699 * 125.20359 * 179.97438 * 5 4 3 7 7 C 1.50703 * 112.84735 * 65.36608 * 6 5 4 8 8 H 1.08005 * 119.99633 * 243.27482 * 7 6 5 9 9 C 1.37877 * 120.00417 * 63.27841 * 7 6 5 10 10 N 1.31515 * 119.99709 * 5.77483 * 9 7 6 11 11 Si 1.86802 * 120.00018 * 185.77042 * 9 7 6 12 12 H 1.48498 * 109.47065 * 359.97438 * 11 9 7 13 13 H 1.48492 * 109.46670 * 120.00034 * 11 9 7 14 14 H 1.48498 * 109.46713 * 239.99950 * 11 9 7 15 15 C 1.53776 * 113.61524 * 294.16745 * 6 5 4 16 16 C 1.53954 * 87.01842 * 220.04772 * 15 6 5 17 17 C 1.53773 * 87.11375 * 25.36362 * 16 15 6 18 18 S 1.75890 * 125.19929 * 179.69463 * 2 1 3 19 19 H 1.09009 * 109.47071 * 90.02850 * 1 2 3 20 20 H 1.08992 * 109.47082 * 330.02470 * 1 2 3 21 21 H 1.09003 * 109.47142 * 210.02255 * 1 2 3 22 22 H 1.08005 * 122.54061 * 359.97438 * 3 2 1 23 23 H 1.07999 * 122.54051 * 180.02562 * 4 3 2 24 24 H 0.96998 * 119.99712 * 180.02562 * 10 9 7 25 25 H 1.09001 * 113.61663 * 334.56606 * 15 6 5 26 26 H 1.08994 * 113.61603 * 105.47108 * 15 6 5 27 27 H 1.08996 * 113.53572 * 270.80772 * 16 15 6 28 28 H 1.09006 * 113.66685 * 139.93510 * 16 15 6 29 29 H 1.09000 * 113.61736 * 220.09191 * 17 16 15 30 30 H 1.09004 * 113.61750 * 89.18509 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0898 0.0000 4 6 3.6380 0.8428 0.0006 5 6 3.9751 -0.4478 0.0005 6 6 5.3860 -0.9771 0.0005 7 6 6.1372 -0.6408 1.2629 8 1 7.0122 -0.0091 1.2186 9 6 5.7076 -1.1394 2.4744 10 7 4.7127 -1.9985 2.5163 11 14 6.5389 -0.5950 4.0562 12 1 7.6230 0.3691 3.7392 13 1 5.5401 0.0559 4.9415 14 1 7.1147 -1.7778 4.7451 15 6 6.1654 -0.6534 -1.2850 16 6 6.7496 -2.0748 -1.1930 17 6 5.4884 -2.4581 -0.4012 18 16 2.5209 -1.4373 0.0077 19 1 -0.3634 -0.0005 -1.0278 20 1 -0.3633 0.8901 0.5134 21 1 -0.3633 -0.8898 0.5142 22 1 1.8669 2.0894 -0.0004 23 1 4.3721 1.6349 0.0010 24 1 4.4102 -2.3490 3.3687 25 1 5.5275 -0.4990 -2.1553 26 1 6.9084 0.1340 -1.1585 27 1 7.6670 -2.1312 -0.6071 28 1 6.8300 -2.5780 -2.1566 29 1 5.6854 -3.1254 0.4378 30 1 4.6649 -2.7980 -1.0294 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261120590.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:22 Heat of formation + Delta-G solvation = 39.545190 kcal Electronic energy + Delta-G solvation = -13213.550833 eV Core-core repulsion = 11100.665079 eV Total energy + Delta-G solvation = -2112.885754 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.077 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.21816 -36.32269 -32.26340 -31.03240 -27.17726 -25.10607 -24.48237 -22.72960 -21.51584 -18.50268 -17.93200 -16.14205 -15.38583 -14.64303 -14.47183 -13.81207 -13.27435 -13.05854 -12.43870 -12.13776 -11.87112 -11.52564 -11.35817 -11.15448 -10.96629 -10.64203 -10.58174 -10.12927 -9.89382 -9.74719 -9.35946 -9.12778 -8.77069 -8.40075 -7.31929 -7.19998 -6.04127 -4.12585 2.17758 2.76728 3.23936 3.28961 3.36455 3.39144 3.88021 4.39491 5.24089 5.63221 5.78624 5.83151 5.93051 5.94372 6.03946 6.15097 6.27584 6.44790 6.57500 6.67596 6.72697 6.82688 6.90799 7.18994 7.27053 7.44004 7.53534 7.63965 7.82990 7.88245 8.35114 8.86376 9.51532 10.99643 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.025182 B = 0.012857 C = 0.010289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.632518 B = 2177.332570 C = 2720.596360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.246 4.246 3 C -0.126 4.126 4 C -0.193 4.193 5 C -0.055 4.055 6 C 0.124 3.876 7 C -0.497 4.497 8 H 0.063 0.937 9 C 0.073 3.927 10 N -0.865 5.865 11 Si 0.889 3.111 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.284 1.284 15 C -0.132 4.132 16 C -0.130 4.130 17 C -0.128 4.128 18 S 0.100 5.900 19 H 0.059 0.941 20 H 0.061 0.939 21 H 0.058 0.942 22 H 0.116 0.884 23 H 0.124 0.876 24 H 0.261 0.739 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.075 0.925 28 H 0.042 0.958 29 H 0.075 0.925 30 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.674 1.571 -4.925 6.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.363 4.363 3 C -0.158 4.158 4 C -0.221 4.221 5 C -0.174 4.174 6 C 0.122 3.878 7 C -0.535 4.535 8 H 0.081 0.919 9 C -0.132 4.132 10 N -0.501 5.501 11 Si 0.716 3.284 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.210 1.210 15 C -0.171 4.171 16 C -0.168 4.168 17 C -0.167 4.167 18 S 0.366 5.634 19 H 0.077 0.923 20 H 0.080 0.920 21 H 0.077 0.923 22 H 0.134 0.866 23 H 0.142 0.858 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.094 0.906 28 H 0.061 0.939 29 H 0.094 0.906 30 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.122 -0.097 -4.780 6.312 hybrid contribution 0.584 1.896 1.157 2.297 sum -3.537 1.799 -3.623 5.373 Atomic orbital electron populations 1.20099 0.89552 1.01766 1.01122 1.24253 0.98924 0.97563 1.15567 1.19845 0.93496 0.97789 1.04628 1.19721 0.94901 0.96574 1.10887 1.25203 0.98583 0.94996 0.98590 1.17972 0.85255 0.91824 0.92794 1.20659 1.11498 1.31619 0.89747 0.91874 1.24960 0.94900 0.94440 0.98893 1.69988 1.26089 1.28302 1.25676 0.86586 0.79485 0.78604 0.83683 1.19708 1.20975 1.21048 1.23048 0.99218 0.96631 0.98167 1.22645 0.98871 0.96900 0.98369 1.22931 0.95170 1.00031 0.98542 1.83975 0.97401 1.09377 1.72666 0.92258 0.91994 0.92332 0.86594 0.85820 0.92878 0.92386 0.92599 0.90608 0.93912 0.90616 0.93421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.02 10.38 36.00 0.37 -0.65 16 2 C -0.25 -4.85 6.51 -36.01 -0.23 -5.09 16 3 C -0.13 -2.54 10.05 -41.21 -0.41 -2.95 16 4 C -0.19 -4.33 9.98 -41.21 -0.41 -4.74 16 5 C -0.06 -1.31 4.66 -36.01 -0.17 -1.47 16 6 C 0.12 2.97 0.66 -156.00 -0.10 2.87 16 7 C -0.50 -13.05 7.99 -34.44 -0.28 -13.33 16 8 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 9 C 0.07 1.94 5.23 -17.82 -0.09 1.85 16 10 N -0.87 -23.63 11.93 55.43 0.66 -22.97 16 11 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 12 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 C -0.13 -2.75 7.21 -25.83 -0.19 -2.94 16 16 C -0.13 -2.63 7.81 -25.83 -0.20 -2.83 16 17 C -0.13 -2.94 6.44 -25.92 -0.17 -3.11 16 18 S 0.10 2.18 22.04 -107.50 -2.37 -0.19 16 19 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 20 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 21 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 22 H 0.12 2.02 8.06 -52.48 -0.42 1.60 16 23 H 0.12 2.68 8.06 -52.49 -0.42 2.26 16 24 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 25 H 0.06 1.14 8.09 -51.93 -0.42 0.72 16 26 H 0.06 1.13 8.09 -51.93 -0.42 0.72 16 27 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.08 1.91 7.40 -51.93 -0.38 1.53 16 30 H 0.05 1.05 7.38 -51.93 -0.38 0.66 16 LS Contribution 265.65 15.07 4.00 4.00 Total: -1.00 -27.48 265.65 -8.72 -36.20 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -4.11 Total: -0.57 kcal Atomic # 6 Polarization: -30.51 SS G_CDS: -1.88 Total: -32.39 kcal Atomic # 7 Polarization: -23.63 SS G_CDS: 0.66 Total: -22.97 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 2.18 SS G_CDS: -2.37 Total: -0.19 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -27.48 -8.72 -36.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261120590.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.747 kcal (2) G-P(sol) polarization free energy of solvation -27.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds