Wall clock time and date at job start Mon Mar 30 2020 02:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33380 * 125.20552 * 2 1 4 4 C 1.38430 * 114.92397 * 179.97438 * 3 2 1 5 5 C 1.33382 * 114.91934 * 0.02562 * 4 3 2 6 6 C 1.50699 * 125.20359 * 179.97438 * 5 4 3 7 7 C 1.50703 * 112.84735 * 65.36608 * 6 5 4 8 8 H 1.08005 * 119.99633 * 243.27482 * 7 6 5 9 9 C 1.37877 * 120.00417 * 63.27841 * 7 6 5 10 10 N 1.31515 * 119.99709 * 5.77483 * 9 7 6 11 11 Si 1.86802 * 120.00018 * 185.77042 * 9 7 6 12 12 H 1.48498 * 109.47065 * 359.97438 * 11 9 7 13 13 H 1.48492 * 109.46670 * 120.00034 * 11 9 7 14 14 H 1.48498 * 109.46713 * 239.99950 * 11 9 7 15 15 C 1.53776 * 113.61524 * 294.16745 * 6 5 4 16 16 C 1.53954 * 87.01842 * 220.04772 * 15 6 5 17 17 C 1.53773 * 87.11375 * 25.36362 * 16 15 6 18 18 S 1.75890 * 125.19929 * 179.69463 * 2 1 3 19 19 H 1.09009 * 109.47071 * 90.02850 * 1 2 3 20 20 H 1.08992 * 109.47082 * 330.02470 * 1 2 3 21 21 H 1.09003 * 109.47142 * 210.02255 * 1 2 3 22 22 H 1.08005 * 122.54061 * 359.97438 * 3 2 1 23 23 H 1.07999 * 122.54051 * 180.02562 * 4 3 2 24 24 H 0.96998 * 119.99712 * 180.02562 * 10 9 7 25 25 H 1.09001 * 113.61663 * 334.56606 * 15 6 5 26 26 H 1.08994 * 113.61603 * 105.47108 * 15 6 5 27 27 H 1.08996 * 113.53572 * 270.80772 * 16 15 6 28 28 H 1.09006 * 113.66685 * 139.93510 * 16 15 6 29 29 H 1.09000 * 113.61736 * 220.09191 * 17 16 15 30 30 H 1.09004 * 113.61750 * 89.18509 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0898 0.0000 4 6 3.6380 0.8428 0.0006 5 6 3.9751 -0.4478 0.0005 6 6 5.3860 -0.9771 0.0005 7 6 6.1372 -0.6408 1.2629 8 1 7.0122 -0.0091 1.2186 9 6 5.7076 -1.1394 2.4744 10 7 4.7127 -1.9985 2.5163 11 14 6.5389 -0.5950 4.0562 12 1 7.6230 0.3691 3.7392 13 1 5.5401 0.0559 4.9415 14 1 7.1147 -1.7778 4.7451 15 6 6.1654 -0.6534 -1.2850 16 6 6.7496 -2.0748 -1.1930 17 6 5.4884 -2.4581 -0.4012 18 16 2.5209 -1.4373 0.0077 19 1 -0.3634 -0.0005 -1.0278 20 1 -0.3633 0.8901 0.5134 21 1 -0.3633 -0.8898 0.5142 22 1 1.8669 2.0894 -0.0004 23 1 4.3721 1.6349 0.0010 24 1 4.4102 -2.3490 3.3687 25 1 5.5275 -0.4990 -2.1553 26 1 6.9084 0.1340 -1.1585 27 1 7.6670 -2.1312 -0.6071 28 1 6.8300 -2.5780 -2.1566 29 1 5.6854 -3.1254 0.4378 30 1 4.6649 -2.7980 -1.0294 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261120590.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:22 Heat of formation + Delta-G solvation = 26.735804 kcal Electronic energy + Delta-G solvation = -13214.106290 eV Core-core repulsion = 11100.665079 eV Total energy + Delta-G solvation = -2113.441211 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.077 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.95115 -37.93716 -34.24283 -32.51347 -28.86429 -26.91823 -26.22546 -24.37628 -23.15345 -20.30139 -19.61186 -17.89593 -17.15094 -16.58757 -16.13750 -15.55577 -14.76325 -14.53313 -14.02562 -13.68158 -13.63723 -13.24115 -13.01344 -12.81450 -12.74668 -12.38579 -12.30045 -11.87709 -11.68594 -11.38430 -11.10967 -10.95341 -10.56028 -10.35109 -9.00897 -8.86944 -8.03243 -6.17398 0.54367 1.14327 1.38769 1.42790 1.51361 1.59051 2.21358 2.44438 3.22596 4.16214 4.23717 4.24827 4.31434 4.56829 4.58440 4.74201 4.82396 4.94631 4.99707 5.01294 5.10339 5.24456 5.26864 5.49935 5.59051 5.64590 5.76927 5.80017 6.00694 6.12949 6.41523 6.85753 7.48231 8.97510 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.025182 B = 0.012857 C = 0.010289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.632518 B = 2177.332570 C = 2720.596360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.231 4.231 3 C -0.140 4.140 4 C -0.199 4.199 5 C -0.086 4.086 6 C 0.105 3.895 7 C -0.508 4.508 8 H 0.055 0.945 9 C 0.032 3.968 10 N -0.886 5.886 11 Si 0.941 3.059 12 H -0.268 1.268 13 H -0.288 1.288 14 H -0.282 1.282 15 C -0.124 4.124 16 C -0.117 4.117 17 C -0.127 4.127 18 S 0.071 5.929 19 H 0.082 0.918 20 H 0.083 0.917 21 H 0.063 0.937 22 H 0.147 0.853 23 H 0.123 0.877 24 H 0.258 0.742 25 H 0.070 0.930 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.043 0.957 30 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.468 2.428 -5.515 7.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.348 4.348 3 C -0.171 4.171 4 C -0.227 4.227 5 C -0.204 4.204 6 C 0.103 3.897 7 C -0.547 4.547 8 H 0.073 0.927 9 C -0.170 4.170 10 N -0.522 5.522 11 Si 0.768 3.232 12 H -0.193 1.193 13 H -0.214 1.214 14 H -0.208 1.208 15 C -0.162 4.162 16 C -0.155 4.155 17 C -0.165 4.165 18 S 0.336 5.664 19 H 0.101 0.899 20 H 0.102 0.898 21 H 0.082 0.918 22 H 0.165 0.835 23 H 0.141 0.859 24 H 0.067 0.933 25 H 0.089 0.911 26 H 0.076 0.924 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.062 0.938 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.899 0.765 -5.376 7.314 hybrid contribution 0.775 1.653 1.313 2.249 sum -4.124 2.418 -4.063 6.274 Atomic orbital electron populations 1.20259 0.86204 1.03077 1.03051 1.24798 1.00958 0.95883 1.13202 1.20107 0.92565 0.99485 1.04942 1.19977 0.96256 0.96200 1.10295 1.25149 0.98893 0.95682 1.00688 1.18060 0.85992 0.92507 0.93125 1.20891 1.11523 1.31123 0.91116 0.92705 1.25541 0.95577 0.94687 1.01239 1.70102 1.27183 1.29194 1.25725 0.85773 0.78579 0.78192 0.80706 1.19272 1.21426 1.20814 1.22985 0.98954 0.97084 0.97206 1.22573 0.97255 0.96413 0.99241 1.22827 0.96828 0.98895 0.97978 1.83969 0.97941 1.11134 1.73341 0.89917 0.89840 0.91818 0.83545 0.85914 0.93322 0.91142 0.92396 0.91114 0.90861 0.93797 0.92985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.82 10.38 71.24 0.74 -1.08 16 2 C -0.23 -8.61 6.51 24.59 0.16 -8.45 16 3 C -0.14 -5.36 10.05 21.22 0.21 -5.15 16 4 C -0.20 -8.76 9.98 21.22 0.21 -8.55 16 5 C -0.09 -4.05 4.66 24.59 0.11 -3.93 16 6 C 0.11 5.06 0.66 -53.15 -0.04 5.02 16 7 C -0.51 -26.91 7.99 25.60 0.20 -26.71 16 8 H 0.05 2.91 7.81 -2.91 -0.02 2.88 16 9 C 0.03 1.71 5.23 84.65 0.44 2.15 16 10 N -0.89 -49.12 11.93 21.45 0.26 -48.87 16 11 Si 0.94 43.29 29.54 68.60 2.03 45.32 16 12 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 13 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 14 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 15 C -0.12 -5.04 7.21 31.18 0.22 -4.82 16 16 C -0.12 -4.60 7.81 31.18 0.24 -4.35 16 17 C -0.13 -5.83 6.44 31.12 0.20 -5.63 16 18 S 0.07 3.06 22.04 -56.49 -1.24 1.81 16 19 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 20 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 21 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 22 H 0.15 4.62 8.06 -2.91 -0.02 4.59 16 23 H 0.12 5.28 8.06 -2.91 -0.02 5.25 16 24 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 25 H 0.07 2.67 8.09 -2.39 -0.02 2.65 16 26 H 0.06 2.30 8.09 -2.39 -0.02 2.28 16 27 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 28 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 29 H 0.04 2.26 7.40 -2.39 -0.02 2.24 16 30 H 0.05 2.30 7.38 -2.39 -0.02 2.28 16 Total: -1.00 -58.19 265.65 4.87 -53.32 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: 1.11 Total: 9.91 kcal Atomic # 6 Polarization: -64.22 SS G_CDS: 2.72 Total: -61.50 kcal Atomic # 7 Polarization: -49.12 SS G_CDS: 0.26 Total: -48.87 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: 3.06 SS G_CDS: -1.24 Total: 1.81 kcal Total: -58.19 4.87 -53.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261120590.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.057 kcal (2) G-P(sol) polarization free energy of solvation -58.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds