Wall clock time and date at job start Mon Mar 30 2020 02:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47145 * 2 1 4 4 C 1.50702 * 109.46732 * 240.00578 * 2 1 3 5 5 H 1.08000 * 120.00101 * 245.46001 * 4 2 1 6 6 C 1.37884 * 120.00133 * 65.47067 * 4 2 1 7 7 N 1.31509 * 119.99876 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99977 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47150 * 59.99970 * 8 6 4 10 10 H 1.48497 * 109.46896 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47018 * 299.99609 * 8 6 4 12 12 C 1.52994 * 109.47451 * 120.00748 * 2 1 3 13 13 C 1.50700 * 115.56488 * 80.03401 * 12 2 1 14 14 C 1.33394 * 125.20305 * 278.54650 * 13 12 2 15 15 C 1.38418 * 114.92164 * 179.97438 * 14 13 12 16 16 C 1.33392 * 114.92000 * 359.97438 * 15 14 13 17 17 S 1.75876 * 125.20223 * 98.23514 * 13 12 2 18 18 C 1.53001 * 117.50003 * 225.72450 * 12 2 1 19 19 C 1.52996 * 60.00027 * 107.48560 * 18 12 2 20 20 H 1.08997 * 109.47124 * 59.99478 * 1 2 3 21 21 H 1.09003 * 109.46874 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.46603 * 299.99396 * 1 2 3 23 23 H 0.97000 * 120.00503 * 180.02562 * 7 6 4 24 24 H 1.08000 * 122.53340 * 359.97438 * 14 13 12 25 25 H 1.07997 * 122.54037 * 179.97438 * 15 14 13 26 26 H 1.07998 * 125.20116 * 179.97438 * 16 15 14 27 27 H 1.08997 * 117.50121 * 214.97775 * 18 12 2 28 28 H 1.09000 * 117.49554 * 359.97438 * 18 12 2 29 29 H 1.09001 * 117.50185 * 252.50555 * 19 18 12 30 30 H 1.09003 * 117.51554 * 107.48538 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.5785 -1.6370 -1.1341 6 6 1.7946 -0.1770 -2.4797 7 7 1.1293 0.9512 -2.5973 8 14 2.4178 -1.0571 -4.0050 9 1 1.8174 -2.4136 -4.0739 10 1 2.0341 -0.2845 -5.2137 11 1 3.8968 -1.1732 -3.9399 12 6 2.0401 -0.7214 1.2491 13 6 2.0351 -2.2267 1.1783 14 6 0.9715 -3.0030 1.3917 15 6 1.2074 -4.3616 1.2707 16 6 2.4623 -4.6886 0.9584 17 16 3.4288 -3.2283 0.7941 18 6 3.1688 -0.0551 2.0383 19 6 1.7482 -0.0770 2.6057 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3632 0.5137 0.8900 23 1 0.9617 1.3263 -3.4760 24 1 0.0001 -2.6019 1.6402 25 1 0.4339 -5.1008 1.4179 26 1 2.8282 -5.6958 0.8239 27 1 3.9078 -0.7054 2.5063 28 1 3.5483 0.8970 1.6673 29 1 1.1927 0.8609 2.6083 30 1 1.5521 -0.7418 3.4469 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261140917.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:29 Heat of formation + Delta-G solvation = 34.270143 kcal Electronic energy + Delta-G solvation = -13207.809605 eV Core-core repulsion = 11094.695108 eV Total energy + Delta-G solvation = -2113.114497 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.077 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.84251 -37.56563 -35.12365 -31.83335 -30.01588 -27.23606 -25.23740 -23.71408 -23.10768 -20.92805 -19.59985 -18.48050 -17.34802 -16.70517 -16.17653 -15.63311 -15.11412 -14.44038 -13.79392 -13.67944 -13.42564 -13.23323 -13.08519 -12.87913 -12.69710 -12.46046 -12.16590 -12.14266 -11.81060 -11.42661 -11.07423 -10.86276 -10.46700 -10.26552 -9.29721 -9.16500 -8.05623 -6.12647 0.31267 0.89854 1.31730 1.40114 1.40518 1.47710 2.04476 2.45389 3.08573 3.27369 3.83951 4.06763 4.27568 4.34343 4.55388 4.78521 4.78947 4.83848 4.98416 5.03910 5.07707 5.27987 5.35036 5.38592 5.44645 5.61328 5.70871 5.77642 5.97194 6.10100 6.45978 6.97298 7.53663 9.01750 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.024034 B = 0.012889 C = 0.010196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.722462 B = 2171.948599 C = 2745.645198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.084 3.916 3 H 0.003 0.997 4 C -0.512 4.512 5 H 0.063 0.937 6 C 0.013 3.987 7 N -0.922 5.922 8 Si 0.936 3.064 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.272 1.272 12 C -0.060 4.060 13 C -0.096 4.096 14 C -0.163 4.163 15 C -0.133 4.133 16 C -0.230 4.230 17 S 0.061 5.939 18 C -0.172 4.172 19 C -0.151 4.151 20 H 0.041 0.959 21 H 0.029 0.971 22 H 0.031 0.969 23 H 0.257 0.743 24 H 0.137 0.863 25 H 0.161 0.839 26 H 0.186 0.814 27 H 0.098 0.902 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.666 -7.966 8.997 12.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.065 3.935 3 H 0.021 0.979 4 C -0.550 4.550 5 H 0.081 0.919 6 C -0.185 4.185 7 N -0.563 5.563 8 Si 0.762 3.238 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.197 1.197 12 C -0.062 4.062 13 C -0.213 4.213 14 C -0.192 4.192 15 C -0.164 4.164 16 C -0.365 4.365 17 S 0.325 5.675 18 C -0.209 4.209 19 C -0.189 4.189 20 H 0.060 0.940 21 H 0.049 0.951 22 H 0.050 0.950 23 H 0.066 0.934 24 H 0.155 0.845 25 H 0.179 0.821 26 H 0.203 0.797 27 H 0.117 0.883 28 H 0.106 0.894 29 H 0.115 0.885 30 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.133 -7.614 8.497 11.832 hybrid contribution -1.240 -0.326 -0.953 1.598 sum 1.893 -7.940 7.544 11.115 Atomic orbital electron populations 1.21555 0.98222 0.98810 0.98981 1.18128 0.92508 0.93110 0.89765 0.97869 1.21635 1.33889 1.08160 0.91355 0.91888 1.25607 0.95830 0.95618 1.01434 1.70031 1.42160 1.20332 1.23757 0.85942 0.79107 0.78856 0.79859 1.20017 1.21179 1.19685 1.19860 1.04341 0.87905 0.94120 1.23541 0.96242 0.96978 1.04579 1.20214 0.99275 0.93470 1.06283 1.20335 0.97367 0.95887 1.02765 1.25810 0.97782 1.01877 1.11067 1.84191 1.14963 0.98204 1.70096 1.23068 0.91979 1.02281 1.03618 1.23044 0.98062 1.02389 0.95429 0.93992 0.95149 0.94978 0.93377 0.84531 0.82148 0.79711 0.88328 0.89360 0.88480 0.87631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.64 8.90 71.98 0.64 -5.00 16 2 C 0.08 4.16 2.18 -11.54 -0.03 4.13 16 3 H 0.00 0.18 7.95 -2.39 -0.02 0.16 16 4 C -0.51 -27.97 8.06 25.60 0.21 -27.77 16 5 H 0.06 3.39 5.68 -2.91 -0.02 3.37 16 6 C 0.01 0.72 5.33 84.66 0.45 1.17 16 7 N -0.92 -54.10 11.73 21.45 0.25 -53.85 16 8 Si 0.94 44.75 29.54 68.60 2.03 46.77 16 9 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 10 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 11 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 12 C -0.06 -2.43 1.61 -52.93 -0.08 -2.51 16 13 C -0.10 -3.70 4.17 24.59 0.10 -3.59 16 14 C -0.16 -5.70 9.51 21.22 0.20 -5.50 16 15 C -0.13 -3.95 10.18 21.22 0.22 -3.73 16 16 C -0.23 -6.72 11.23 66.72 0.75 -5.97 16 17 S 0.06 2.13 22.17 -56.49 -1.25 0.87 16 18 C -0.17 -6.05 9.85 30.59 0.30 -5.75 16 19 C -0.15 -4.96 9.53 30.59 0.29 -4.66 16 20 H 0.04 2.24 6.52 -2.39 -0.02 2.23 16 21 H 0.03 1.39 7.30 -2.39 -0.02 1.38 16 22 H 0.03 1.33 7.69 -2.39 -0.02 1.31 16 23 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 24 H 0.14 4.58 7.78 -2.91 -0.02 4.55 16 25 H 0.16 3.69 8.06 -2.91 -0.02 3.66 16 26 H 0.19 4.09 8.06 -2.91 -0.02 4.06 16 27 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 28 H 0.09 3.19 8.08 -2.39 -0.02 3.17 16 29 H 0.10 3.11 7.97 -2.39 -0.02 3.09 16 30 H 0.11 3.02 8.14 -2.39 -0.02 3.00 16 Total: -1.00 -60.64 264.98 5.19 -55.45 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: 1.12 Total: 9.94 kcal Atomic # 6 Polarization: -62.24 SS G_CDS: 3.05 Total: -59.19 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: 0.25 Total: -53.85 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Atomic # 16 Polarization: 2.13 SS G_CDS: -1.25 Total: 0.87 kcal Total: -60.64 5.19 -55.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261140917.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.719 kcal (2) G-P(sol) polarization free energy of solvation -60.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds