Wall clock time and date at job start Mon Mar 30 2020 02:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38416 * 122.53903 * 2 1 4 4 C 1.33391 * 114.92180 * 179.97438 * 3 2 1 5 5 S 1.75886 * 109.58841 * 359.75751 * 4 3 2 6 6 C 1.33382 * 122.53584 * 179.97438 * 2 1 3 7 7 C 1.50699 * 125.20526 * 0.02562 * 6 2 1 8 8 C 1.50703 * 112.85179 * 65.14172 * 7 6 2 9 9 H 1.08001 * 119.99545 * 233.91179 * 8 7 6 10 10 C 1.37873 * 120.00188 * 53.90500 * 8 7 6 11 11 N 1.31515 * 120.00085 * 13.74196 * 10 8 7 12 12 Si 1.86805 * 120.00438 * 193.73211 * 10 8 7 13 13 H 1.48491 * 109.47297 * 180.02562 * 12 10 8 14 14 H 1.48494 * 109.47109 * 300.00847 * 12 10 8 15 15 H 1.48506 * 109.46274 * 60.00399 * 12 10 8 16 16 C 1.53785 * 113.69303 * 196.40706 * 7 6 2 17 17 C 1.53773 * 87.08208 * 139.99089 * 16 7 6 18 18 C 1.53778 * 113.61468 * 293.94079 * 7 6 2 19 19 H 1.09000 * 109.47412 * 273.86379 * 1 2 3 20 20 H 1.09004 * 109.47136 * 33.86120 * 1 2 3 21 21 H 1.08997 * 109.47716 * 153.86150 * 1 2 3 22 22 H 1.08002 * 122.54201 * 359.95754 * 3 2 1 23 23 H 1.08001 * 125.20692 * 179.97438 * 4 3 2 24 24 H 0.97003 * 119.99617 * 358.33279 * 11 10 8 25 25 H 1.08993 * 113.61595 * 254.54519 * 16 7 6 26 26 H 1.08999 * 113.61109 * 25.44160 * 16 7 6 27 27 H 1.09003 * 113.61328 * 220.01701 * 17 16 7 28 28 H 1.08997 * 113.61261 * 89.11899 * 17 16 7 29 29 H 1.09001 * 113.61613 * 334.48705 * 18 7 6 30 30 H 1.08998 * 113.61293 * 105.38742 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2515 1.1669 0.0000 4 6 3.5736 0.9901 0.0005 5 16 3.9385 -0.7305 0.0081 6 6 2.2244 -1.1245 0.0005 7 6 1.6535 -2.5192 0.0006 8 6 0.8920 -2.8399 -1.2597 9 1 -0.1248 -3.1989 -1.1996 10 6 1.4933 -2.6750 -2.4894 11 7 2.7948 -2.5028 -2.5672 12 14 0.4596 -2.6965 -4.0452 13 1 1.3382 -2.5001 -5.2261 14 1 -0.2369 -4.0030 -4.1587 15 1 -0.5444 -1.6037 -3.9873 16 6 2.6695 -3.6027 0.3990 17 6 1.5317 -4.2669 1.1920 18 6 0.8905 -2.8724 1.2881 19 1 -0.3634 0.0692 1.0253 20 1 -0.3633 0.8534 -0.5726 21 1 -0.3634 -0.9225 -0.4527 22 1 1.7965 2.1464 -0.0007 23 1 4.3078 1.7822 0.0002 24 1 3.3286 -2.4676 -1.7579 25 1 3.0227 -4.2002 -0.4414 26 1 3.4802 -3.2317 1.0260 27 1 1.8476 -4.6696 2.1545 28 1 0.9477 -4.9766 0.6062 29 1 1.2148 -2.3018 2.1584 30 1 -0.1925 -2.8805 1.1656 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261152550.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:57 Heat of formation + Delta-G solvation = 23.829005 kcal Electronic energy + Delta-G solvation = -13609.078355 eV Core-core repulsion = 11495.511096 eV Total energy + Delta-G solvation = -2113.567259 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.077 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.41147 -38.14875 -34.35182 -31.59290 -28.95580 -27.31927 -26.20830 -24.59028 -23.20260 -20.59178 -19.30491 -18.57820 -17.64090 -16.22579 -15.64591 -15.60738 -14.88635 -14.70792 -14.49228 -13.77265 -13.49391 -13.20807 -12.86442 -12.66004 -12.55963 -12.43474 -12.03381 -11.94873 -11.81893 -11.61476 -11.21847 -10.85723 -10.76836 -10.15881 -9.23501 -8.95354 -8.38088 -6.16452 0.40966 1.00192 1.37701 1.55338 1.61736 1.79227 2.05495 2.62311 3.28444 4.02794 4.08085 4.14164 4.25126 4.39249 4.58703 4.75119 4.79544 4.83846 4.87768 4.97348 5.07073 5.11745 5.29449 5.36767 5.38367 5.41338 5.70425 5.92919 6.03789 6.23867 6.37741 6.80487 7.61035 8.95801 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.022769 B = 0.015289 C = 0.012860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.465999 B = 1830.983468 C = 2176.812266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.152 4.152 3 C -0.129 4.129 4 C -0.242 4.242 5 S 0.030 5.970 6 C -0.115 4.115 7 C 0.099 3.901 8 C -0.574 4.574 9 H 0.051 0.949 10 C -0.012 4.012 11 N -0.926 5.926 12 Si 1.094 2.906 13 H -0.293 1.293 14 H -0.273 1.273 15 H -0.273 1.273 16 C -0.152 4.152 17 C -0.113 4.113 18 C -0.114 4.114 19 H 0.069 0.931 20 H 0.063 0.937 21 H 0.064 0.936 22 H 0.156 0.844 23 H 0.181 0.819 24 H 0.276 0.724 25 H 0.032 0.968 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.204 4.122 6.170 7.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.163 4.163 3 C -0.160 4.160 4 C -0.377 4.377 5 S 0.296 5.704 6 C -0.232 4.232 7 C 0.096 3.904 8 C -0.612 4.612 9 H 0.069 0.931 10 C -0.215 4.215 11 N -0.563 5.563 12 Si 0.919 3.081 13 H -0.219 1.219 14 H -0.198 1.198 15 H -0.199 1.199 16 C -0.190 4.190 17 C -0.150 4.150 18 C -0.152 4.152 19 H 0.087 0.913 20 H 0.082 0.918 21 H 0.083 0.917 22 H 0.174 0.826 23 H 0.198 0.802 24 H 0.089 0.911 25 H 0.051 0.949 26 H 0.076 0.924 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.710 3.415 4.538 5.724 hybrid contribution -0.867 0.658 1.323 1.713 sum -1.577 4.073 5.862 7.310 Atomic orbital electron populations 1.20430 0.89384 1.02775 1.01493 1.19030 0.98430 0.91689 1.07139 1.20258 0.93009 0.99482 1.03289 1.25656 1.00157 0.98327 1.13571 1.84037 1.09659 1.02317 1.74374 1.25114 0.93343 1.00824 1.03961 1.18140 0.93145 0.84636 0.94448 1.21567 1.00349 1.48328 0.90981 0.93093 1.26728 0.97231 0.93207 1.04331 1.70815 1.05928 1.45841 1.33682 0.83221 0.74288 0.77660 0.72947 1.21884 1.19805 1.19875 1.23204 0.96878 1.00506 0.98451 1.22482 0.97162 0.96218 0.99160 1.22852 0.99187 0.96481 0.96710 0.91279 0.91778 0.91687 0.82641 0.80159 0.91125 0.94942 0.92374 0.90617 0.91025 0.91223 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.05 9.52 71.24 0.68 -2.37 16 2 C -0.15 -6.42 5.78 -20.92 -0.12 -6.54 16 3 C -0.13 -4.78 9.98 21.21 0.21 -4.57 16 4 C -0.24 -8.86 11.23 66.72 0.75 -8.11 16 5 S 0.03 1.30 20.55 -56.49 -1.16 0.14 16 6 C -0.11 -5.29 4.15 24.59 0.10 -5.19 16 7 C 0.10 4.64 0.09 -53.15 0.00 4.63 16 8 C -0.57 -30.03 6.33 25.60 0.16 -29.86 16 9 H 0.05 2.65 7.85 -2.91 -0.02 2.63 16 10 C -0.01 -0.68 5.18 84.65 0.44 -0.24 16 11 N -0.93 -54.58 13.33 21.45 0.29 -54.29 16 12 Si 1.09 49.55 29.93 68.60 2.05 51.60 16 13 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 14 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 15 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 16 C -0.15 -6.90 5.92 31.12 0.18 -6.72 16 17 C -0.11 -4.35 7.80 31.12 0.24 -4.11 16 18 C -0.11 -4.52 6.77 31.12 0.21 -4.31 16 19 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 20 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 21 H 0.06 2.74 5.95 -2.39 -0.01 2.72 16 22 H 0.16 4.63 8.06 -2.91 -0.02 4.61 16 23 H 0.18 5.24 8.06 -2.91 -0.02 5.22 16 24 H 0.28 15.92 4.26 -92.71 -0.40 15.52 16 25 H 0.03 1.64 7.73 -2.39 -0.02 1.62 16 26 H 0.06 2.51 7.36 -2.39 -0.02 2.50 16 27 H 0.08 2.44 8.14 -2.39 -0.02 2.43 16 28 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 29 H 0.07 2.58 8.09 -2.39 -0.02 2.56 16 30 H 0.06 2.40 8.09 -2.39 -0.02 2.38 16 Total: -1.00 -60.81 255.90 5.52 -55.29 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 1.49 Total: 14.65 kcal Atomic # 6 Polarization: -70.23 SS G_CDS: 2.85 Total: -67.38 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: 0.29 Total: -54.29 kcal Atomic # 14 Polarization: 49.55 SS G_CDS: 2.05 Total: 51.60 kcal Atomic # 16 Polarization: 1.30 SS G_CDS: -1.16 Total: 0.14 kcal Total: -60.81 5.52 -55.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261152550.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.116 kcal (2) G-P(sol) polarization free energy of solvation -60.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds