Wall clock time and date at job start Mon Mar 30 2020 02:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.47098 * 2 1 4 4 C 1.50703 * 109.46991 * 240.00504 * 2 1 3 5 5 H 1.08001 * 119.99223 * 274.76903 * 4 2 1 6 6 C 1.37871 * 120.00123 * 95.04287 * 4 2 1 7 7 N 1.31517 * 119.99660 * 183.24555 * 6 4 2 8 8 Si 1.86794 * 120.00332 * 3.24709 * 6 4 2 9 9 H 1.48507 * 109.47277 * 85.07483 * 8 6 4 10 10 H 1.48496 * 109.47637 * 205.07555 * 8 6 4 11 11 H 1.48507 * 109.47277 * 325.07821 * 8 6 4 12 12 C 1.50693 * 109.47586 * 120.00065 * 2 1 3 13 13 C 1.32631 * 125.17911 * 240.00058 * 12 2 1 14 14 C 1.40120 * 115.63310 * 179.97438 * 13 12 2 15 15 C 1.33819 * 113.71238 * 0.04353 * 14 13 12 16 16 S 1.75590 * 125.17299 * 59.69064 * 12 2 1 17 17 C 1.52110 * 110.67748 * 179.97438 * 15 14 13 18 18 C 1.54218 * 104.84474 * 342.60958 * 17 15 14 19 19 C 1.52806 * 136.53489 * 180.10056 * 14 13 12 20 20 H 1.09000 * 109.47132 * 176.40981 * 1 2 3 21 21 H 1.09005 * 109.47102 * 296.40831 * 1 2 3 22 22 H 1.09002 * 109.47800 * 56.40773 * 1 2 3 23 23 H 0.97005 * 119.99317 * 180.02562 * 7 6 4 24 24 H 1.08000 * 122.18226 * 359.92976 * 13 12 2 25 25 H 1.08999 * 110.36360 * 223.76873 * 17 15 14 26 26 H 1.08998 * 110.36391 * 101.45186 * 17 15 14 27 27 H 1.09002 * 110.97251 * 268.36717 * 18 17 15 28 28 H 1.09000 * 111.01031 * 144.60078 * 18 17 15 29 29 H 1.08996 * 110.32567 * 316.41806 * 19 14 13 30 30 H 1.08997 * 110.32210 * 78.53021 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.1389 -1.7850 -1.2278 6 6 2.3610 0.0123 -2.3578 7 7 2.7383 -0.6119 -3.4521 8 14 2.2705 1.8779 -2.3307 9 1 3.5376 2.4271 -1.7845 10 1 2.0665 2.3838 -3.7118 11 1 1.1356 2.3060 -1.4739 12 6 2.0324 -0.7104 1.2304 13 6 2.7982 -0.1672 2.1672 14 6 3.1489 -1.0120 3.2286 15 6 2.6468 -2.2478 3.1212 16 16 1.6867 -2.3810 1.6458 17 6 3.0694 -3.1040 4.3053 18 6 4.2626 -2.3529 4.9302 19 6 3.9719 -0.8986 4.5111 20 1 -0.3633 -1.0256 -0.0644 21 1 -0.3633 0.4571 0.9205 22 1 -0.3635 0.5686 -0.8560 23 1 2.9700 -0.1034 -4.2451 24 1 3.1303 0.8591 2.1149 25 1 3.3788 -4.0929 3.9671 26 1 2.2542 -3.1859 5.0243 27 1 5.2059 -2.6990 4.5077 28 1 4.2630 -2.4539 6.0155 29 1 4.9031 -0.3663 4.3175 30 1 3.3985 -0.3882 5.2849 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261261363.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:32 Heat of formation + Delta-G solvation = 18.642922 kcal Electronic energy + Delta-G solvation = -12750.299957 eV Core-core repulsion = 10636.507813 eV Total energy + Delta-G solvation = -2113.792144 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.077 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.87316 -35.53574 -32.97335 -31.19257 -28.02713 -26.71318 -25.21468 -22.17222 -21.26766 -19.49696 -17.92838 -16.92200 -16.11453 -15.42385 -14.48245 -13.99490 -13.37598 -12.73129 -12.59841 -12.43712 -12.34118 -11.87799 -11.63837 -11.21847 -11.11332 -10.99993 -10.98076 -10.69327 -10.39344 -10.21484 -9.80022 -9.78641 -9.16798 -8.61484 -7.66651 -7.52324 -6.13861 -4.14283 1.79051 2.24100 2.86446 3.24795 3.33473 3.33939 3.38130 4.35863 4.80459 4.84542 5.09816 5.19288 5.40253 5.73326 5.79478 5.89654 5.94833 5.98259 6.11283 6.26084 6.27860 6.32634 6.55558 6.62245 6.87015 6.96994 7.04685 7.18888 7.34497 7.64657 8.42454 8.89936 9.46484 10.98857 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.042468 B = 0.008171 C = 0.007832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.161357 B = 3426.091249 C = 3574.166845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.067 3.933 3 H 0.049 0.951 4 C -0.511 4.511 5 H 0.079 0.921 6 C 0.074 3.926 7 N -0.895 5.895 8 Si 0.874 3.126 9 H -0.274 1.274 10 H -0.287 1.287 11 H -0.263 1.263 12 C -0.092 4.092 13 C -0.171 4.171 14 C -0.115 4.115 15 C -0.247 4.247 16 S 0.120 5.880 17 C -0.036 4.036 18 C -0.118 4.118 19 C -0.057 4.057 20 H 0.048 0.952 21 H 0.027 0.973 22 H 0.050 0.950 23 H 0.265 0.735 24 H 0.126 0.874 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.121 -0.984 14.368 14.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.047 3.953 3 H 0.067 0.933 4 C -0.549 4.549 5 H 0.097 0.903 6 C -0.128 4.128 7 N -0.532 5.532 8 Si 0.701 3.299 9 H -0.200 1.200 10 H -0.213 1.213 11 H -0.187 1.187 12 C -0.209 4.209 13 C -0.199 4.199 14 C -0.128 4.128 15 C -0.364 4.364 16 S 0.386 5.614 17 C -0.076 4.076 18 C -0.157 4.157 19 C -0.096 4.096 20 H 0.067 0.933 21 H 0.046 0.954 22 H 0.069 0.931 23 H 0.075 0.925 24 H 0.143 0.857 25 H 0.086 0.914 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.681 -2.125 13.447 13.631 hybrid contribution 0.899 2.161 0.349 2.366 sum 0.218 0.036 13.797 13.798 Atomic orbital electron populations 1.22053 0.97670 1.00798 0.99008 1.17986 0.92657 0.95271 0.89434 0.93342 1.20952 1.44093 0.95587 0.94219 0.90298 1.25014 0.94223 0.98318 0.95245 1.69892 1.45156 1.35909 1.02218 0.86904 0.79276 0.86352 0.77386 1.20011 1.21296 1.18747 1.24786 1.00882 0.95706 0.99555 1.19422 1.04494 1.01009 0.94950 1.20372 1.01537 0.93814 0.97054 1.25691 1.08587 1.00428 1.01677 1.83940 1.50436 1.12445 1.14601 1.20650 0.97134 0.97315 0.92485 1.22273 0.98262 0.95085 1.00049 1.20938 0.98482 0.96893 0.93289 0.93289 0.95395 0.93064 0.92463 0.85656 0.91443 0.91013 0.91002 0.90777 0.91354 0.90988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 9.07 37.16 0.34 -2.60 16 2 C 0.07 1.60 2.31 -92.93 -0.21 1.39 16 3 H 0.05 1.16 5.30 -51.93 -0.28 0.88 16 4 C -0.51 -14.24 8.77 -34.44 -0.30 -14.54 16 5 H 0.08 2.40 7.95 -52.49 -0.42 1.98 16 6 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 7 N -0.89 -27.10 13.96 55.43 0.77 -26.32 16 8 Si 0.87 21.21 26.91 -169.99 -4.57 16.63 16 9 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 11 H -0.26 -6.05 6.78 56.52 0.38 -5.66 16 12 C -0.09 -2.01 5.05 -36.21 -0.18 -2.19 16 13 C -0.17 -3.43 9.99 -40.77 -0.41 -3.84 16 14 C -0.11 -2.04 6.54 -104.41 -0.68 -2.72 16 15 C -0.25 -4.33 7.35 -35.16 -0.26 -4.59 16 16 S 0.12 2.37 23.02 -107.50 -2.47 -0.11 16 17 C -0.04 -0.48 6.80 -26.55 -0.18 -0.66 16 18 C -0.12 -1.35 7.12 -25.51 -0.18 -1.53 16 19 C -0.06 -0.76 6.81 -26.25 -0.18 -0.94 16 20 H 0.05 1.03 8.12 -51.93 -0.42 0.61 16 21 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.05 1.09 8.01 -51.93 -0.42 0.68 16 23 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 24 H 0.13 2.36 8.06 -52.49 -0.42 1.94 16 25 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 262.90 15.07 3.96 3.96 Total: -1.00 -29.97 262.90 -8.73 -38.69 By element: Atomic # 1 Polarization: 1.41 SS G_CDS: -4.06 Total: -2.66 kcal Atomic # 6 Polarization: -27.85 SS G_CDS: -2.35 Total: -30.20 kcal Atomic # 7 Polarization: -27.10 SS G_CDS: 0.77 Total: -26.32 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.57 Total: 16.63 kcal Atomic # 16 Polarization: 2.37 SS G_CDS: -2.47 Total: -0.11 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.97 -8.73 -38.69 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261261363.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.336 kcal (2) G-P(sol) polarization free energy of solvation -29.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds