Wall clock time and date at job start Mon Mar 30 2020 02:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47048 * 2 1 4 4 C 1.50699 * 109.47108 * 119.99785 * 2 1 3 5 5 H 1.07998 * 120.00321 * 119.99864 * 4 2 1 6 6 C 1.37881 * 119.99728 * 300.00466 * 4 2 1 7 7 N 1.31514 * 120.00419 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99953 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47044 * 59.99253 * 8 6 4 10 10 H 1.48500 * 109.47075 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46648 * 299.99558 * 8 6 4 12 12 C 1.50701 * 109.47501 * 239.99631 * 2 1 3 13 13 C 1.32625 * 125.17782 * 120.01732 * 12 2 1 14 14 C 1.40120 * 115.63907 * 179.97438 * 13 12 2 15 15 C 1.33827 * 113.70350 * 359.95489 * 14 13 12 16 16 S 1.75584 * 125.17155 * 299.98065 * 12 2 1 17 17 C 1.52114 * 110.67546 * 180.08627 * 15 14 13 18 18 C 1.54483 * 104.86080 * 17.40804 * 17 15 14 19 19 C 1.52789 * 136.54279 * 179.97438 * 14 13 12 20 20 H 1.08996 * 109.47404 * 300.00446 * 1 2 3 21 21 H 1.09005 * 109.46596 * 60.00284 * 1 2 3 22 22 H 1.08996 * 109.47048 * 180.02562 * 1 2 3 23 23 H 0.96994 * 120.00391 * 180.02562 * 7 6 4 24 24 H 1.08003 * 122.18074 * 0.02562 * 13 12 2 25 25 H 1.08999 * 110.36597 * 136.25591 * 17 15 14 26 26 H 1.09005 * 110.36107 * 258.46403 * 17 15 14 27 27 H 1.08999 * 111.06863 * 215.43804 * 18 17 15 28 28 H 1.09006 * 110.99028 * 91.58218 * 18 17 15 29 29 H 1.09002 * 110.32560 * 281.33572 * 19 14 13 30 30 H 1.09002 * 110.32409 * 43.44718 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6991 -0.2392 2.4827 7 7 0.9434 0.8303 2.6034 8 14 2.3224 -1.1193 4.0081 9 1 3.8074 -1.1188 4.0078 10 1 1.8276 -0.4190 5.2205 11 1 1.8279 -2.5196 4.0083 12 6 2.0324 -0.7105 -1.2304 13 6 2.7985 -0.1674 -2.1670 14 6 3.1501 -1.0125 -3.2279 15 6 2.6484 -2.2485 -3.1202 16 16 1.6935 -2.3835 -1.6415 17 6 3.0732 -3.1055 -4.3030 18 6 4.2693 -2.3536 -4.9278 19 6 3.9747 -0.8998 -4.5092 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0276 0.0005 23 1 0.7093 1.1619 3.4843 24 1 3.1303 0.8590 -2.1150 25 1 3.3821 -4.0942 -3.9636 26 1 2.2585 -3.1896 -5.0223 27 1 4.2718 -2.4545 -6.0131 28 1 5.2122 -2.6984 -4.5032 29 1 3.4019 -0.3913 -5.2847 30 1 4.9050 -0.3659 -4.3150 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261261366.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:33 Heat of formation + Delta-G solvation = 3.730212 kcal Electronic energy + Delta-G solvation = -12716.109290 eV Core-core repulsion = 10601.670482 eV Total energy + Delta-G solvation = -2114.438808 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.077 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.13553 -37.13779 -34.81609 -32.38540 -29.11974 -27.95289 -27.26382 -23.82625 -22.57948 -21.07449 -19.17269 -18.55628 -17.48490 -16.64068 -16.38788 -15.47443 -14.84396 -14.66824 -13.92140 -13.64504 -13.48753 -13.13588 -12.92084 -12.80467 -12.71536 -12.46016 -12.23709 -12.19414 -11.95678 -11.66304 -11.62113 -11.38989 -11.02961 -10.52953 -9.21538 -8.97520 -8.15551 -6.30952 0.32125 0.78245 1.37890 1.39419 1.40765 1.48679 1.90901 2.40245 3.11824 3.67231 3.77072 4.21949 4.24324 4.58116 4.65379 4.74846 4.77593 4.89058 4.96359 4.99859 5.04792 5.12396 5.18266 5.36535 5.40010 5.51838 5.60355 5.71134 5.81866 5.95761 6.24312 6.75260 7.37154 8.88805 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.045812 B = 0.007542 C = 0.007292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.046505 B = 3711.849426 C = 3838.677326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.101 3.899 3 H 0.016 0.984 4 C -0.530 4.530 5 H 0.050 0.950 6 C 0.018 3.982 7 N -0.914 5.914 8 Si 0.955 3.045 9 H -0.273 1.273 10 H -0.278 1.278 11 H -0.270 1.270 12 C -0.134 4.134 13 C -0.169 4.169 14 C -0.134 4.134 15 C -0.239 4.239 16 S 0.090 5.910 17 C -0.038 4.038 18 C -0.107 4.107 19 C -0.055 4.055 20 H 0.066 0.934 21 H 0.027 0.973 22 H 0.029 0.971 23 H 0.265 0.735 24 H 0.126 0.874 25 H 0.078 0.922 26 H 0.091 0.909 27 H 0.109 0.891 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.497 -5.998 -13.447 15.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.081 3.919 3 H 0.034 0.966 4 C -0.568 4.568 5 H 0.069 0.931 6 C -0.181 4.181 7 N -0.553 5.553 8 Si 0.780 3.220 9 H -0.198 1.198 10 H -0.203 1.203 11 H -0.195 1.195 12 C -0.251 4.251 13 C -0.197 4.197 14 C -0.146 4.146 15 C -0.356 4.356 16 S 0.356 5.644 17 C -0.078 4.078 18 C -0.145 4.145 19 C -0.094 4.094 20 H 0.085 0.915 21 H 0.046 0.954 22 H 0.048 0.952 23 H 0.074 0.926 24 H 0.144 0.856 25 H 0.097 0.903 26 H 0.109 0.891 27 H 0.128 0.872 28 H 0.095 0.905 29 H 0.107 0.893 30 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.556 -7.038 -12.590 14.856 hybrid contribution 0.768 1.194 0.802 1.630 sum 4.324 -5.845 -11.788 13.850 Atomic orbital electron populations 1.21654 0.96960 0.99229 1.00153 1.17341 0.93182 0.93663 0.87750 0.96614 1.21326 1.31788 1.12590 0.91109 0.93148 1.25702 0.95030 0.95640 1.01728 1.69980 1.37154 1.23773 1.24403 0.85654 0.78802 0.78890 0.78650 1.19783 1.20335 1.19543 1.24755 1.02722 0.96893 1.00721 1.19745 1.03208 1.01466 0.95327 1.20847 1.02342 0.93303 0.98119 1.26324 1.06465 1.01567 1.01236 1.83846 1.52385 1.11347 1.16795 1.20947 0.98589 0.97255 0.90992 1.22372 0.97279 0.92765 1.02110 1.21091 0.98232 0.98878 0.91230 0.91515 0.95415 0.95191 0.92596 0.85568 0.90334 0.89110 0.87226 0.90504 0.89330 0.90483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.18 8.89 71.98 0.64 -5.54 16 2 C 0.10 5.35 2.67 -12.29 -0.03 5.31 16 3 H 0.02 0.91 8.08 -2.39 -0.02 0.89 16 4 C -0.53 -30.09 8.46 25.60 0.22 -29.88 16 5 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 6 C 0.02 1.03 5.30 84.66 0.45 1.48 16 7 N -0.91 -52.96 11.32 21.45 0.24 -52.72 16 8 Si 0.96 44.18 29.54 68.60 2.03 46.21 16 9 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 12 C -0.13 -6.21 5.00 24.52 0.12 -6.09 16 13 C -0.17 -7.00 9.99 21.56 0.22 -6.79 16 14 C -0.13 -4.61 6.54 -19.73 -0.13 -4.74 16 15 C -0.24 -8.05 7.35 25.14 0.18 -7.86 16 16 S 0.09 3.67 23.01 -56.49 -1.30 2.37 16 17 C -0.04 -0.88 6.81 30.81 0.21 -0.67 16 18 C -0.11 -1.94 7.14 31.48 0.22 -1.71 16 19 C -0.06 -1.30 6.80 30.91 0.21 -1.09 16 20 H 0.07 3.66 6.07 -2.39 -0.01 3.65 16 21 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 22 H 0.03 1.45 8.00 -2.39 -0.02 1.43 16 23 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 24 H 0.13 5.06 8.06 -2.91 -0.02 5.04 16 25 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 27 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 29 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -62.68 263.40 4.40 -58.29 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: 1.12 Total: 3.43 kcal Atomic # 6 Polarization: -59.88 SS G_CDS: 2.31 Total: -57.57 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: 0.24 Total: -52.72 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: 3.67 SS G_CDS: -1.30 Total: 2.37 kcal Total: -62.68 4.40 -58.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261261366.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.016 kcal (2) G-P(sol) polarization free energy of solvation -62.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds