Wall clock time and date at job start Mon Mar 30 2020 02:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50701 * 109.46661 * 2 1 4 4 C 1.38321 * 119.92284 * 265.24864 * 3 2 1 5 5 C 1.38062 * 120.08301 * 180.30223 * 4 3 2 6 6 C 1.38997 * 119.91665 * 359.72632 * 5 4 3 7 7 S 1.76197 * 120.07871 * 179.97438 * 6 5 4 8 8 C 1.38961 * 119.83765 * 359.97438 * 6 5 4 9 9 C 1.38101 * 119.92243 * 0.02562 * 8 6 5 10 10 C 1.50698 * 119.96259 * 179.97438 * 9 8 6 11 11 C 1.50697 * 109.46993 * 265.00295 * 10 9 8 12 12 H 1.07991 * 120.00449 * 359.72131 * 11 10 9 13 13 C 1.37885 * 119.99686 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99913 * 359.72095 * 13 11 10 15 15 Si 1.86798 * 119.99766 * 179.72528 * 13 11 10 16 16 H 1.48490 * 109.47339 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47239 * 120.00108 * 15 13 11 18 18 H 1.48504 * 109.46636 * 239.99667 * 15 13 11 19 19 H 1.09004 * 109.46795 * 179.97438 * 1 2 3 20 20 H 1.08994 * 109.47096 * 299.99780 * 1 2 3 21 21 H 1.09004 * 109.47050 * 60.00121 * 1 2 3 22 22 H 1.09006 * 109.46740 * 240.00457 * 2 1 3 23 23 H 1.08994 * 109.47107 * 120.00400 * 2 1 3 24 24 H 1.08004 * 119.95951 * 0.02562 * 4 3 2 25 25 H 1.07992 * 120.04239 * 179.70853 * 5 4 3 26 26 H 1.34500 * 103.00000 * 270.01766 * 7 6 5 27 27 H 1.07996 * 120.03403 * 180.02562 * 8 6 5 28 28 H 1.08998 * 109.47083 * 144.99710 * 10 9 8 29 29 H 1.09001 * 109.46875 * 24.99973 * 10 9 8 30 30 H 0.97000 * 119.99651 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3558 2.0383 -1.1947 5 6 2.8222 3.3378 -1.1980 6 6 2.9609 4.0276 0.0007 7 16 3.5563 5.6859 0.0015 8 6 2.6290 3.4061 1.1984 9 6 2.1632 2.1060 1.1940 10 6 1.8034 1.4310 2.4924 11 6 2.9799 0.6274 2.9836 12 1 3.8948 0.6039 2.4104 13 6 2.8863 -0.0820 4.1622 14 7 1.7723 -0.0529 4.8605 15 14 4.3420 -1.0842 4.7671 16 1 5.4670 -0.9523 3.8070 17 1 4.7668 -0.5855 6.0997 18 1 3.9489 -2.5122 4.8752 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 1.8933 -0.5138 -0.8901 23 1 1.8934 -0.5139 0.8899 24 1 2.2478 1.5017 -2.1258 25 1 3.0790 3.8176 -2.1308 26 1 4.8875 5.5294 0.1128 27 1 2.7352 3.9392 2.1316 28 1 0.9519 0.7692 2.3342 29 1 1.5439 2.1859 3.2346 30 1 1.7066 -0.5516 5.6899 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306594995.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:56 Heat of formation + Delta-G solvation = 1.584251 kcal Electronic energy + Delta-G solvation = -12812.011506 eV Core-core repulsion = 10697.479642 eV Total energy + Delta-G solvation = -2114.531864 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.077 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.02536 -34.02955 -33.08312 -31.25100 -29.05774 -27.12495 -23.81009 -23.08575 -21.11799 -20.05275 -17.39849 -16.40349 -15.61130 -15.30428 -14.75404 -14.33228 -13.32305 -13.18775 -13.08131 -12.55909 -12.30351 -11.74083 -11.60815 -11.33646 -11.14519 -10.82094 -10.70100 -10.51859 -10.33358 -10.03535 -9.54684 -9.47961 -8.47977 -8.27615 -7.93512 -7.86659 -6.10517 -4.14323 1.41174 1.98100 2.08890 3.08641 3.24357 3.32795 3.36915 4.22921 4.42525 5.22704 5.26624 5.44891 5.47309 5.67818 5.90284 5.99145 6.05054 6.06868 6.31643 6.37250 6.56481 6.68373 6.79195 6.85757 6.91951 7.18103 7.43063 7.57864 7.74842 7.85571 8.24844 8.90839 9.49589 10.99085 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.025144 B = 0.008863 C = 0.007304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.301948 B = 3158.276011 C = 3832.547952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.091 4.091 3 C -0.054 4.054 4 C -0.131 4.131 5 C -0.098 4.098 6 C -0.115 4.115 7 S -0.150 6.150 8 C -0.074 4.074 9 C -0.041 4.041 10 C 0.046 3.954 11 C -0.511 4.511 12 H 0.056 0.944 13 C 0.061 3.939 14 N -0.890 5.890 15 Si 0.892 3.108 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.283 1.283 19 H 0.052 0.948 20 H 0.062 0.938 21 H 0.045 0.955 22 H 0.058 0.942 23 H 0.099 0.901 24 H 0.118 0.882 25 H 0.121 0.879 26 H 0.069 0.931 27 H 0.128 0.872 28 H 0.039 0.961 29 H 0.028 0.972 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.181 3.765 -9.914 10.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.129 4.129 3 C -0.054 4.054 4 C -0.151 4.151 5 C -0.119 4.119 6 C -0.227 4.227 7 S 0.008 5.992 8 C -0.095 4.095 9 C -0.043 4.043 10 C 0.010 3.990 11 C -0.549 4.549 12 H 0.074 0.926 13 C -0.141 4.141 14 N -0.529 5.529 15 Si 0.719 3.281 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.209 1.209 19 H 0.071 0.929 20 H 0.081 0.919 21 H 0.064 0.936 22 H 0.077 0.923 23 H 0.118 0.882 24 H 0.136 0.864 25 H 0.139 0.861 26 H 0.033 0.967 27 H 0.146 0.854 28 H 0.057 0.943 29 H 0.046 0.954 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.204 4.656 -9.772 10.826 hybrid contribution 1.575 -1.659 0.501 2.342 sum 1.778 2.996 -9.271 9.904 Atomic orbital electron populations 1.21703 0.95196 1.01243 1.01756 1.20635 0.95829 0.92838 1.03565 1.20013 0.96778 0.96240 0.92394 1.20961 1.01802 0.94760 0.97561 1.21228 0.99812 0.94341 0.96496 1.21035 1.09555 0.95793 0.96281 1.85665 1.07749 1.07746 1.98073 1.21500 0.96837 0.94643 0.96519 1.20624 0.94097 0.92496 0.97092 1.18431 0.97594 0.95528 0.87490 1.21029 0.98738 1.28672 1.06500 0.92606 1.24987 0.95902 0.96660 0.96578 1.69959 1.25662 1.41997 1.15287 0.86532 0.82766 0.79968 0.78794 1.19761 1.20917 1.20863 0.92857 0.91871 0.93593 0.92323 0.88214 0.86399 0.86114 0.96662 0.85423 0.94251 0.95389 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.72 37.16 0.36 -1.87 16 2 C -0.09 -1.59 5.38 -27.88 -0.15 -1.74 16 3 C -0.05 -1.01 5.14 -104.57 -0.54 -1.55 16 4 C -0.13 -2.13 9.67 -39.62 -0.38 -2.51 16 5 C -0.10 -1.58 9.79 -39.36 -0.39 -1.96 16 6 C -0.11 -2.02 6.11 -39.03 -0.24 -2.26 16 7 S -0.15 -2.29 25.78 -107.50 -2.77 -5.06 16 8 C -0.07 -1.47 9.42 -39.36 -0.37 -1.84 16 9 C -0.04 -0.87 5.07 -104.66 -0.53 -1.40 16 10 C 0.05 1.14 4.43 -29.04 -0.13 1.01 16 11 C -0.51 -13.72 8.27 -34.44 -0.28 -14.00 16 12 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 14 N -0.89 -25.43 13.29 55.43 0.74 -24.70 16 15 Si 0.89 21.05 29.54 -169.99 -5.02 16.02 16 16 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 20 H 0.06 1.10 6.79 -51.93 -0.35 0.75 16 21 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.06 0.88 8.05 -51.93 -0.42 0.46 16 23 H 0.10 2.03 6.39 -51.93 -0.33 1.70 16 24 H 0.12 1.59 8.06 -52.48 -0.42 1.16 16 25 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 26 H 0.07 1.01 9.07 97.61 0.89 1.89 16 27 H 0.13 2.50 8.06 -52.49 -0.42 2.08 16 28 H 0.04 0.99 5.62 -51.93 -0.29 0.70 16 29 H 0.03 0.73 8.05 -51.93 -0.42 0.31 16 30 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 268.85 15.07 4.05 4.05 Total: -1.00 -27.68 268.85 -8.33 -36.01 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -2.58 Total: 0.25 kcal Atomic # 6 Polarization: -23.83 SS G_CDS: -2.74 Total: -26.57 kcal Atomic # 7 Polarization: -25.43 SS G_CDS: 0.74 Total: -24.70 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: -2.29 SS G_CDS: -2.77 Total: -5.06 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -27.68 -8.33 -36.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306594995.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.593 kcal (2) G-P(sol) polarization free energy of solvation -27.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds