Wall clock time and date at job start Mon Mar 30 2020 02:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50702 * 109.46736 * 2 1 4 4 C 1.38319 * 119.96069 * 270.02139 * 3 2 1 5 5 C 1.38288 * 120.15878 * 179.77255 * 4 3 2 6 6 C 1.38105 * 120.07916 * 0.46304 * 5 4 3 7 7 C 1.50699 * 120.03981 * 179.79347 * 6 5 4 8 8 C 1.50706 * 109.46817 * 264.72564 * 7 6 5 9 9 H 1.07995 * 120.00167 * 359.72198 * 8 7 6 10 10 C 1.37879 * 119.99394 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00338 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99424 * 180.02562 * 10 8 7 13 13 H 1.48490 * 109.47405 * 60.00219 * 12 10 8 14 14 H 1.48503 * 109.46845 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47399 * 299.99813 * 12 10 8 16 16 C 1.38951 * 119.91926 * 359.51760 * 6 5 4 17 17 S 1.76199 * 120.08205 * 180.22619 * 16 6 5 18 18 C 1.38056 * 119.95542 * 90.00572 * 3 2 1 19 19 H 1.08999 * 109.47014 * 299.99254 * 1 2 3 20 20 H 1.08999 * 109.47385 * 59.99764 * 1 2 3 21 21 H 1.09001 * 109.46787 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.46939 * 240.00251 * 2 1 3 23 23 H 1.08999 * 109.47385 * 120.00236 * 2 1 3 24 24 H 1.07993 * 119.92159 * 0.02650 * 4 3 2 25 25 H 1.08000 * 119.95688 * 180.23765 * 5 4 3 26 26 H 1.09000 * 109.47247 * 144.72627 * 7 6 5 27 27 H 1.09001 * 109.47358 * 24.72054 * 7 6 5 28 28 H 0.96996 * 119.99730 * 179.97438 * 11 10 8 29 29 H 1.34507 * 102.99631 * 90.00123 * 17 16 6 30 30 H 1.08002 * 120.04590 * 0.02562 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2621 2.0723 -1.1984 5 6 2.7185 3.3777 -1.2031 6 6 2.9556 4.0324 -0.0105 7 6 3.4573 5.4534 -0.0168 8 6 4.9595 5.4562 0.1052 9 1 5.4965 4.5226 0.1843 10 6 5.6475 6.6509 0.1210 11 7 4.9930 7.7880 0.0302 12 14 7.5094 6.6544 0.2714 13 1 8.0999 5.9155 -0.8733 14 1 8.0039 8.0547 0.2653 15 1 7.9047 5.9959 1.5424 16 6 2.7254 3.3813 1.1952 17 16 3.0208 4.2146 2.7194 18 6 2.2621 2.0708 1.1961 19 1 -0.3633 0.5137 0.8900 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 2.0807 1.5616 -2.1325 25 1 2.8931 3.8845 -2.1407 26 1 3.0236 5.9956 0.8234 27 1 3.1677 5.9369 -0.9497 28 1 5.4771 8.6285 0.0417 29 1 1.8360 4.7949 2.9814 30 1 2.0826 1.5615 2.1315 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306597218.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:16 Heat of formation + Delta-G solvation = 5.493145 kcal Electronic energy + Delta-G solvation = -12595.969112 eV Core-core repulsion = 10481.606751 eV Total energy + Delta-G solvation = -2114.362362 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.077 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.93866 -34.60304 -32.69868 -30.47918 -30.27087 -26.83918 -23.90675 -22.43154 -21.95676 -20.15266 -17.05835 -16.19032 -15.51077 -15.29875 -14.68165 -14.19628 -13.72693 -13.57445 -13.02180 -12.68056 -12.28983 -11.94278 -11.56946 -11.33005 -11.05028 -10.98299 -10.75518 -10.51090 -10.41449 -9.98207 -9.55706 -9.40629 -8.34729 -8.33210 -7.81961 -7.17315 -5.95546 -3.96601 1.53712 1.94882 2.41364 3.39341 3.42563 3.46483 3.47825 4.26155 4.54960 4.97128 5.08357 5.39053 5.41268 5.46890 5.53042 5.67601 5.83152 5.86891 6.04054 6.10768 6.21721 6.37206 6.57519 6.89753 6.92444 7.02972 7.44037 7.59619 7.78745 7.99064 8.37855 9.04534 9.65036 11.15342 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.038298 B = 0.007618 C = 0.007076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.924704 B = 3674.545905 C = 3956.340611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.076 4.076 3 C -0.125 4.125 4 C -0.093 4.093 5 C -0.132 4.132 6 C 0.007 3.993 7 C 0.045 3.955 8 C -0.493 4.493 9 H 0.055 0.945 10 C 0.061 3.939 11 N -0.897 5.897 12 Si 0.893 3.107 13 H -0.278 1.278 14 H -0.288 1.288 15 H -0.275 1.275 16 C -0.113 4.113 17 S -0.112 6.112 18 C -0.071 4.071 19 H 0.053 0.947 20 H 0.054 0.946 21 H 0.052 0.948 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.115 0.885 25 H 0.124 0.876 26 H 0.041 0.959 27 H 0.026 0.974 28 H 0.261 0.739 29 H 0.054 0.946 30 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.176 -12.052 0.210 14.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.126 4.126 4 C -0.111 4.111 5 C -0.152 4.152 6 C 0.005 3.995 7 C 0.008 3.992 8 C -0.531 4.531 9 H 0.073 0.927 10 C -0.140 4.140 11 N -0.536 5.536 12 Si 0.721 3.279 13 H -0.204 1.204 14 H -0.214 1.214 15 H -0.200 1.200 16 C -0.225 4.225 17 S 0.046 5.954 18 C -0.092 4.092 19 H 0.072 0.928 20 H 0.073 0.927 21 H 0.071 0.929 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.133 0.867 25 H 0.142 0.858 26 H 0.059 0.941 27 H 0.044 0.956 28 H 0.071 0.929 29 H 0.018 0.982 30 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.780 -11.486 1.026 13.377 hybrid contribution -0.039 0.067 -0.714 0.718 sum -6.820 -11.419 0.312 13.304 Atomic orbital electron populations 1.21760 0.95361 1.01095 1.02108 1.20422 0.95642 0.92976 1.02335 1.19640 1.03659 0.96299 0.93043 1.21089 0.98221 0.94798 0.96999 1.21123 1.01261 0.94582 0.98240 1.21116 0.88452 0.99047 0.90913 1.18525 0.96757 0.85397 0.98552 1.20791 0.90019 0.92432 1.49849 0.92684 1.24916 0.98321 0.95468 0.95308 1.69938 1.35580 0.97303 1.50810 0.86626 0.85609 0.76837 0.78803 1.20362 1.21358 1.20005 1.21144 1.09149 0.96676 0.95527 1.85946 1.18988 1.66749 1.23681 1.21311 0.97033 0.93461 0.97438 0.92763 0.92688 0.92856 0.91435 0.91425 0.86657 0.85798 0.94060 0.95584 0.92946 0.98175 0.86075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.89 37.16 0.37 -1.13 16 2 C -0.08 -0.88 6.06 -27.88 -0.17 -1.05 16 3 C -0.12 -1.90 5.13 -104.66 -0.54 -2.44 16 4 C -0.09 -1.48 9.70 -39.53 -0.38 -1.86 16 5 C -0.13 -2.52 9.67 -39.61 -0.38 -2.90 16 6 C 0.01 0.16 5.09 -104.41 -0.53 -0.37 16 7 C 0.04 1.15 4.57 -29.03 -0.13 1.02 16 8 C -0.49 -13.81 9.08 -34.44 -0.31 -14.12 16 9 H 0.05 1.55 7.74 -52.49 -0.41 1.15 16 10 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 11 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 12 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 15 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 16 C -0.11 -2.29 6.11 -39.03 -0.24 -2.53 16 17 S -0.11 -2.26 24.08 -107.50 -2.59 -4.85 16 18 C -0.07 -1.21 9.45 -39.36 -0.37 -1.58 16 19 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 20 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 21 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 23 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 24 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 25 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 26 H 0.04 1.13 7.02 -51.93 -0.36 0.76 16 27 H 0.03 0.70 8.05 -51.93 -0.42 0.28 16 28 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.05 1.01 9.07 97.61 0.89 1.90 16 30 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 273.39 15.07 4.12 4.12 Total: -1.00 -29.54 273.39 -8.36 -37.90 By element: Atomic # 1 Polarization: 0.00 SS G_CDS: -2.81 Total: -2.81 kcal Atomic # 6 Polarization: -22.54 SS G_CDS: -2.79 Total: -25.33 kcal Atomic # 7 Polarization: -26.62 SS G_CDS: 0.74 Total: -25.88 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: -2.26 SS G_CDS: -2.59 Total: -4.85 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.54 -8.36 -37.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306597218.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.388 kcal (2) G-P(sol) polarization free energy of solvation -29.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds