Wall clock time and date at job start Mon Mar 30 2020 02:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.20754 * 119.99917 * 2 1 4 4 C 1.50694 * 119.99670 * 180.02562 * 2 1 3 5 5 C 1.50700 * 109.46891 * 180.02562 * 4 2 1 6 6 C 1.37578 * 120.11518 * 265.27242 * 5 4 2 7 7 C 1.38691 * 120.32599 * 180.30110 * 6 5 4 8 8 C 1.38513 * 120.54040 * 359.69683 * 7 6 5 9 9 C 1.37942 * 120.21661 * 359.97438 * 8 7 6 10 10 F 1.35093 * 120.16284 * 179.97438 * 9 8 7 11 11 C 1.40706 * 120.11556 * 84.99640 * 5 4 2 12 12 C 1.41292 * 120.26597 * 359.97438 * 11 5 4 13 13 H 1.07998 * 119.99745 * 323.35009 * 12 11 5 14 14 C 1.39937 * 119.99959 * 143.34623 * 12 11 5 15 15 N 1.30841 * 120.00213 * 339.82107 * 14 12 11 16 16 Si 1.86804 * 119.99774 * 159.81926 * 14 12 11 17 17 H 1.48500 * 109.46950 * 89.99998 * 16 14 12 18 18 H 1.48500 * 109.46936 * 210.00092 * 16 14 12 19 19 H 1.48504 * 109.46987 * 330.00378 * 16 14 12 20 20 H 1.08995 * 109.47191 * 239.99809 * 1 2 3 21 21 H 1.09005 * 109.46766 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47380 * 119.99214 * 1 2 3 23 23 H 1.08997 * 109.47978 * 59.99744 * 4 2 1 24 24 H 1.09009 * 109.46975 * 299.99083 * 4 2 1 25 25 H 1.08009 * 119.83537 * 0.02562 * 6 5 4 26 26 H 1.08000 * 119.73215 * 179.71717 * 7 6 5 27 27 H 1.07999 * 119.89443 * 180.02562 * 8 7 6 28 28 H 0.96998 * 120.00150 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 6 3.7421 -1.0297 0.0002 6 6 4.4391 -0.9993 -1.1856 7 6 5.8039 -0.7524 -1.1894 8 6 6.4818 -0.5274 -0.0027 9 6 5.8038 -0.5462 1.1985 10 9 6.4662 -0.3271 2.3553 11 6 4.4163 -0.7972 1.2131 12 6 3.7096 -0.8197 2.4364 13 1 2.7028 -0.4321 2.4855 14 6 4.3142 -1.3445 3.5841 15 7 5.3358 -2.1544 3.4733 16 14 3.6628 -0.8885 5.2745 17 1 2.6180 -1.8621 5.6814 18 1 4.7753 -0.9163 6.2577 19 1 3.0772 0.4754 5.2279 20 1 -0.3633 -0.5138 0.8899 21 1 -0.3633 1.0277 0.0005 22 1 -0.3634 -0.5137 -0.8900 23 1 1.9972 -1.8764 -0.8907 24 1 1.9972 -1.8770 0.8893 25 1 3.9217 -1.1728 -2.1177 26 1 6.3424 -0.7352 -2.1254 27 1 7.5446 -0.3358 -0.0179 28 1 5.7552 -2.5179 4.2689 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306813872.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:50 Heat of formation + Delta-G solvation = -89.322591 kcal Electronic energy + Delta-G solvation = -15001.975219 eV Core-core repulsion = 12317.288163 eV Total energy + Delta-G solvation = -2684.687056 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.080 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.96138 -40.49187 -38.81150 -35.49679 -33.46332 -31.48252 -30.90587 -28.04625 -26.76157 -22.91282 -22.25586 -20.27128 -19.26287 -17.52110 -17.28353 -16.60444 -16.45227 -15.99270 -15.74935 -15.66008 -15.58454 -14.56430 -13.99111 -13.58511 -13.42404 -13.10886 -13.01719 -12.88842 -12.83723 -12.50118 -12.38172 -12.24394 -11.81738 -11.26632 -10.90404 -10.46071 -9.27769 -9.02029 -8.67339 -6.38766 0.83031 0.93865 1.28943 1.33691 1.43099 1.48868 2.19157 2.71971 3.33461 3.70460 4.09738 4.21773 4.31555 4.42902 4.59308 4.70426 4.79546 4.90516 4.92712 5.10155 5.16881 5.31117 5.36154 5.69023 5.74983 5.95089 6.07178 6.28583 6.48787 6.87344 6.88390 6.97023 8.34474 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.021305 B = 0.014576 C = 0.009550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.934494 B = 1920.544488 C = 2931.304616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.351 3.649 3 O -0.504 6.504 4 C -0.110 4.110 5 C -0.163 4.163 6 C -0.103 4.103 7 C -0.204 4.204 8 C -0.151 4.151 9 C -0.009 4.009 10 F -0.162 7.162 11 C 0.067 3.933 12 C -0.496 4.496 13 H 0.078 0.922 14 C 0.039 3.961 15 N -0.817 5.817 16 Si 0.967 3.033 17 H -0.249 1.249 18 H -0.274 1.274 19 H -0.266 1.266 20 H 0.107 0.893 21 H 0.074 0.926 22 H 0.122 0.878 23 H 0.125 0.875 24 H 0.102 0.898 25 H 0.133 0.867 26 H 0.134 0.866 27 H 0.115 0.885 28 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.001 -1.141 -4.593 9.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.229 3.771 3 O -0.381 6.381 4 C -0.147 4.147 5 C -0.164 4.164 6 C -0.121 4.121 7 C -0.223 4.223 8 C -0.170 4.170 9 C -0.030 4.030 10 F -0.141 7.141 11 C 0.064 3.936 12 C -0.525 4.525 13 H 0.096 0.904 14 C -0.177 4.177 15 N -0.443 5.443 16 Si 0.788 3.212 17 H -0.173 1.173 18 H -0.198 1.198 19 H -0.190 1.190 20 H 0.125 0.875 21 H 0.093 0.907 22 H 0.140 0.860 23 H 0.143 0.857 24 H 0.120 0.880 25 H 0.151 0.849 26 H 0.152 0.848 27 H 0.133 0.867 28 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.503 -0.748 -4.419 8.740 hybrid contribution 0.545 0.165 1.200 1.328 sum -6.958 -0.583 -3.219 7.689 Atomic orbital electron populations 1.22307 0.91040 1.05042 1.06527 1.25312 0.93476 0.89808 0.68480 1.90385 1.73579 1.36595 1.37552 1.20909 0.90938 0.97418 1.05390 1.19775 0.96065 1.08167 0.92394 1.20923 0.94284 0.99894 0.97042 1.20654 0.94901 1.10319 0.96415 1.20928 0.99394 1.04405 0.92265 1.18364 0.92468 1.11347 0.80777 1.91246 1.80837 1.92698 1.49308 1.17770 0.90289 0.90869 0.94625 1.19377 1.01861 1.37916 0.93360 0.90375 1.26577 0.94162 0.92306 1.04665 1.69823 1.19482 1.21604 1.33349 0.85421 0.79034 0.79910 0.76785 1.17283 1.19844 1.19046 0.87466 0.90688 0.85998 0.85686 0.87973 0.84927 0.84792 0.86695 0.90416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.19 10.26 71.24 0.73 -3.46 15 2 C 0.35 12.14 6.89 29.10 0.20 12.34 15 3 O -0.50 -22.89 16.76 -1.43 -0.02 -22.91 15 4 C -0.11 -3.89 5.16 29.10 0.15 -3.74 15 5 C -0.16 -7.55 4.43 -19.42 -0.09 -7.63 15 6 C -0.10 -4.34 9.66 22.22 0.21 -4.13 15 7 C -0.20 -8.74 10.05 22.44 0.23 -8.51 15 8 C -0.15 -7.38 10.01 22.27 0.22 -7.16 15 9 C -0.01 -0.53 6.69 22.88 0.15 -0.37 15 10 F -0.16 -9.61 14.26 44.97 0.64 -8.97 15 11 C 0.07 3.70 5.40 -21.25 -0.11 3.59 15 12 C -0.50 -27.13 7.75 23.43 0.18 -26.95 15 13 H 0.08 4.10 7.14 -2.91 -0.02 4.08 15 14 C 0.04 2.07 4.50 85.25 0.38 2.45 15 15 N -0.82 -45.43 11.12 21.83 0.24 -45.18 15 16 Si 0.97 40.51 29.60 68.60 2.03 42.54 15 17 H -0.25 -9.46 7.11 99.48 0.71 -8.75 15 18 H -0.27 -11.24 7.11 99.48 0.71 -10.53 15 19 H -0.27 -11.23 7.11 99.48 0.71 -10.52 15 20 H 0.11 1.99 8.14 -2.39 -0.02 1.97 15 21 H 0.07 1.65 8.12 -2.38 -0.02 1.63 15 22 H 0.12 1.79 8.14 -2.39 -0.02 1.77 15 23 H 0.13 3.32 8.05 -2.39 -0.02 3.30 15 24 H 0.10 3.71 7.23 -2.38 -0.02 3.69 15 25 H 0.13 4.43 8.06 -2.91 -0.02 4.41 15 26 H 0.13 4.67 8.06 -2.91 -0.02 4.65 15 27 H 0.12 5.06 8.06 -2.91 -0.02 5.04 15 28 H 0.29 14.60 8.30 -92.71 -0.77 13.83 15 Total: -1.00 -69.86 253.15 6.32 -63.54 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 1.17 Total: 14.56 kcal Atomic # 6 Polarization: -45.84 SS G_CDS: 2.26 Total: -43.58 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: 0.24 Total: -45.18 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -0.02 Total: -22.91 kcal Atomic # 9 Polarization: -9.61 SS G_CDS: 0.64 Total: -8.97 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.54 kcal Total: -69.86 6.32 -63.54 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306813872.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.784 kcal (2) G-P(sol) polarization free energy of solvation -69.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds